Wall clock time and date at job start Tue Mar 31 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48500 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47035 * 300.00070 * 3 2 1 6 6 H 1.48494 * 109.47194 * 60.00079 * 3 2 1 7 7 C 1.39061 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00237 * 160.08630 * 7 2 1 9 9 N 1.36834 * 119.99888 * 340.07454 * 7 2 1 10 10 C 1.34776 * 119.99725 * 134.03343 * 9 7 2 11 11 O 1.21651 * 119.99737 * 186.00018 * 10 9 7 12 12 C 1.47352 * 120.00416 * 5.99343 * 10 9 7 13 13 C 1.39213 * 120.30755 * 325.37856 * 12 10 9 14 14 C 1.38658 * 120.33813 * 179.97438 * 13 12 10 15 15 F 1.35104 * 119.64109 * 180.02562 * 14 13 12 16 16 C 1.38163 * 120.71079 * 359.97438 * 14 13 12 17 17 C 1.38916 * 120.08664 * 0.04179 * 16 14 13 18 18 N 1.37311 * 134.84125 * 179.97438 * 17 16 14 19 19 H 0.97002 * 125.95171 * 359.97438 * 18 17 16 20 20 N 1.28828 * 108.10533 * 180.02562 * 18 17 16 21 21 N 1.28667 * 111.70336 * 0.02562 * 20 18 17 22 22 C 1.34485 * 109.28178 * 0.02562 * 21 20 18 23 23 C 1.46504 * 120.00374 * 314.03234 * 9 7 2 24 24 C 1.53007 * 117.49477 * 1.09800 * 23 9 7 25 25 C 1.53006 * 117.49588 * 292.47838 * 23 9 7 26 26 H 0.96999 * 120.00178 * 5.05839 * 1 2 3 27 27 H 1.07994 * 119.83046 * 0.25536 * 13 12 10 28 28 H 1.07995 * 119.96123 * 180.02562 * 16 14 13 29 29 H 1.08990 * 115.55025 * 146.80855 * 23 9 7 30 30 H 1.08996 * 117.49768 * 0.02562 * 24 23 9 31 31 H 1.09001 * 117.49493 * 145.02176 * 24 23 9 32 32 H 1.09000 * 117.49668 * 214.97575 * 25 23 9 33 33 H 1.08994 * 117.49567 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7075 1.3464 -0.0006 5 1 1.8887 2.3964 -1.2125 6 1 1.8888 2.3964 1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0404 -1.2322 -0.3191 9 7 1.3861 -2.3540 0.4028 10 6 1.5134 -3.4806 -0.3260 11 8 0.8740 -4.4721 -0.0296 12 6 2.4268 -3.5112 -1.4818 13 6 2.6004 -2.3771 -2.2703 14 6 3.4602 -2.4051 -3.3578 15 9 3.6185 -1.2961 -4.1131 16 6 4.1576 -3.5544 -3.6765 17 6 4.0020 -4.6997 -2.9060 18 7 4.5243 -5.9691 -2.9416 19 1 5.1619 -6.3045 -3.5912 20 7 4.0194 -6.6374 -1.9628 21 7 3.2009 -5.9245 -1.2719 22 6 3.1320 -4.6898 -1.8006 23 6 0.5811 -2.3605 1.6268 24 6 0.4545 -1.0438 2.3960 25 6 1.3157 -2.1775 2.9565 26 1 -0.4850 0.8367 -0.0741 27 1 2.0661 -1.4696 -2.0311 28 1 4.8245 -3.5625 -4.5260 29 1 -0.2841 -3.0232 1.6169 30 1 0.9697 -0.1729 1.9910 31 1 -0.4944 -0.8402 2.8921 32 1 0.9334 -2.7196 3.8214 33 1 2.3979 -2.0528 2.9204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282201402.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:04 Heat of formation + Delta-G solvation = 67.719023 kcal Electronic energy + Delta-G solvation = -23131.230754 eV Core-core repulsion = 19495.896230 eV Total energy + Delta-G solvation = -3635.334524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 17.28 seconds Orbital eigenvalues (eV) -49.95759 -44.28560 -40.87589 -38.53266 -37.75220 -35.08284 -34.81216 -33.51731 -31.57523 -31.03296 -27.20084 -25.84472 -24.49824 -24.21688 -23.00834 -22.58830 -21.33993 -19.89959 -19.54331 -18.52460 -18.10687 -17.43386 -17.22439 -16.92850 -16.46539 -16.41310 -16.09978 -15.62894 -15.07158 -14.88613 -14.64358 -14.32221 -13.92439 -13.46553 -13.16592 -13.11611 -12.82305 -12.73940 -12.67337 -12.23632 -12.08317 -12.04683 -11.93140 -11.55516 -11.11129 -10.71043 -10.34695 -9.94322 -9.43441 -9.21747 -8.29822 -6.09667 -0.80782 0.04313 1.13215 1.42503 1.48566 1.51031 1.61116 1.83861 2.25444 2.50048 2.71591 2.89221 2.92415 3.22640 3.41408 3.53760 3.83782 3.91105 4.07358 4.21161 4.28959 4.36792 4.44442 4.65891 4.73765 4.86689 4.95257 5.05867 5.17708 5.29599 5.44458 5.54139 5.62847 5.97377 6.05950 6.39419 7.06072 7.19675 7.47933 7.96412 8.72147 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.007290 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.429718 B = 3840.073718 C = 5167.480961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.033 3.967 3 Si 0.959 3.041 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.407 5.407 10 C 0.501 3.499 11 O -0.617 6.617 12 C -0.034 4.034 13 C -0.099 4.099 14 C 0.123 3.877 15 F -0.123 7.123 16 C -0.100 4.100 17 C 0.046 3.954 18 N -0.384 5.384 19 H 0.475 0.525 20 N -0.023 5.023 21 N -0.276 5.276 22 C 0.010 3.990 23 C 0.071 3.929 24 C -0.132 4.132 25 C -0.192 4.192 26 H 0.277 0.723 27 H 0.171 0.829 28 H 0.198 0.802 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.408 -0.437 -7.791 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.499 4.499 8 H 0.112 0.888 9 N -0.122 5.122 10 C 0.291 3.709 11 O -0.504 6.504 12 C -0.041 4.041 13 C -0.121 4.121 14 C 0.100 3.900 15 F -0.101 7.101 16 C -0.123 4.123 17 C -0.075 4.075 18 N -0.116 5.116 19 H 0.328 0.672 20 N -0.005 5.005 21 N -0.152 5.152 22 C -0.117 4.117 23 C -0.034 4.034 24 C -0.170 4.170 25 C -0.231 4.231 26 H 0.087 0.913 27 H 0.188 0.812 28 H 0.215 0.785 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.814 -2.076 -6.790 12.114 hybrid contribution 0.219 1.601 -0.772 1.790 sum 10.033 -0.476 -7.562 12.573 Atomic orbital electron populations 1.70123 1.07533 1.29146 1.43005 1.25997 0.95550 1.01906 0.93987 0.85419 0.79665 0.78296 0.78515 1.18111 1.19771 1.19777 1.19566 0.96626 0.84829 1.48926 0.88753 1.42845 1.42823 1.08354 1.18219 1.18496 0.84536 0.84336 0.83548 1.90644 1.50282 1.37047 1.72459 1.18748 0.97409 0.91061 0.96897 1.22158 0.97618 0.99762 0.92532 1.17113 0.98423 0.83645 0.90841 1.91544 1.94260 1.50275 1.74018 1.20079 1.02935 0.87368 1.01884 1.19149 0.99764 0.89399 0.99210 1.44685 1.35685 1.06483 1.24787 0.67226 1.77931 1.05804 1.20571 0.96244 1.75411 1.14110 1.02778 1.22864 1.19811 1.01229 0.93562 0.97053 1.21234 0.96597 1.01950 0.83597 1.23115 1.00447 0.92966 1.00486 1.23401 0.98904 1.04087 0.96699 0.91324 0.81220 0.78542 0.89662 0.88002 0.89174 0.87572 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.37 11.34 21.68 0.25 -42.12 16 2 C 0.03 1.50 2.89 84.96 0.25 1.75 16 3 Si 0.96 35.86 29.19 68.60 2.00 37.86 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.37 -17.72 5.56 84.11 0.47 -17.26 16 8 H 0.10 4.36 6.56 -2.91 -0.02 4.34 16 9 N -0.41 -20.79 2.77 -616.88 -1.71 -22.50 16 10 C 0.50 26.54 7.37 86.64 0.64 27.18 16 11 O -0.62 -36.56 16.54 -4.19 -0.07 -36.63 16 12 C -0.03 -1.50 5.52 -19.97 -0.11 -1.61 16 13 C -0.10 -3.78 7.80 22.60 0.18 -3.60 16 14 C 0.12 3.58 7.27 22.35 0.16 3.74 16 15 F -0.12 -3.35 17.25 44.97 0.78 -2.57 16 16 C -0.10 -2.24 10.03 22.41 0.22 -2.01 16 17 C 0.05 1.30 7.40 39.04 0.29 1.58 16 18 N -0.38 -8.62 7.08 -51.70 -0.37 -8.98 16 19 H 0.48 4.89 8.96 -219.81 -1.97 2.92 16 20 N -0.02 -0.76 13.29 37.02 0.49 -0.27 16 21 N -0.28 -11.77 12.27 -51.99 -0.64 -12.41 16 22 C 0.01 0.42 6.94 40.01 0.28 0.69 16 23 C 0.07 3.47 5.62 45.00 0.25 3.73 16 24 C -0.13 -5.68 8.17 30.60 0.25 -5.43 16 25 C -0.19 -7.82 10.39 30.60 0.32 -7.51 16 26 H 0.28 12.70 8.31 -92.71 -0.77 11.93 16 27 H 0.17 7.20 5.44 -2.91 -0.02 7.18 16 28 H 0.20 2.26 8.06 -2.91 -0.02 2.23 16 29 H 0.09 4.44 7.78 -2.39 -0.02 4.42 16 30 H 0.10 4.60 4.53 -2.39 -0.01 4.59 16 31 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -68.53 290.07 3.16 -65.38 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.77 Total: 20.99 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 3.19 Total: 1.25 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -1.98 Total: -86.28 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.07 Total: -36.63 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.00 Total: 37.86 kcal Total: -68.53 3.16 -65.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282201402.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.094 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.28 seconds