Wall clock time and date at job start Tue Mar 31 2020 08:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99734 * 2 1 4 4 H 1.48505 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47173 * 299.99726 * 3 2 1 6 6 H 1.48496 * 109.47445 * 59.99793 * 3 2 1 7 7 C 1.37874 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99749 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00178 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47095 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47096 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47226 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99914 * 180.02562 * 12 11 10 14 14 O 1.21578 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.47675 * 119.99992 * 179.97438 * 13 12 11 16 16 C 1.39818 * 120.06101 * 0.29477 * 15 13 12 17 17 C 1.37690 * 120.16774 * 180.27101 * 16 15 13 18 18 C 1.38888 * 120.11011 * 359.45178 * 17 16 15 19 19 O 1.35467 * 132.80308 * 180.25693 * 18 17 16 20 20 C 1.34230 * 109.23877 * 179.97438 * 19 18 17 21 21 O 1.21589 * 125.25806 * 179.97438 * 20 19 18 22 22 N 1.34770 * 109.49306 * 0.02562 * 20 19 18 23 23 H 0.96997 * 126.27337 * 180.02562 * 22 20 19 24 24 C 1.39543 * 107.46039 * 359.97438 * 22 20 19 25 25 C 1.38244 * 133.24636 * 179.97438 * 24 22 20 26 26 H 0.97002 * 119.99751 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46569 * 60.00815 * 9 7 2 28 28 H 1.08999 * 109.47113 * 300.00891 * 9 7 2 29 29 H 1.09001 * 109.47076 * 60.00210 * 10 9 7 30 30 H 1.08998 * 109.47376 * 300.00655 * 10 9 7 31 31 H 1.09001 * 109.47283 * 59.99974 * 11 10 9 32 32 H 1.09007 * 109.47098 * 300.00088 * 11 10 9 33 33 H 0.97004 * 119.99891 * 359.97438 * 12 11 10 34 34 H 1.07996 * 119.91573 * 359.97438 * 16 15 13 35 35 H 1.08002 * 119.94686 * 179.73419 * 17 16 15 36 36 H 1.08000 * 120.14689 * 0.04686 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 1.9831 -7.3712 -0.0015 14 8 0.7878 -7.5934 -0.0024 15 6 2.9427 -8.4937 -0.0014 16 6 4.3176 -8.2397 0.0058 17 6 5.2143 -9.2846 0.0002 18 6 4.7563 -10.5958 -0.0011 19 8 5.3911 -11.7925 -0.0016 20 6 4.4788 -12.7771 -0.0025 21 8 4.7300 -13.9667 -0.0035 22 7 3.2412 -12.2435 -0.0031 23 1 2.4046 -12.7343 -0.0033 24 6 3.3838 -10.8554 -0.0020 25 6 2.4789 -9.8103 -0.0024 26 1 -0.4850 0.8401 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.8719 -3.6043 0.8895 30 1 2.8721 -3.6043 -0.8904 31 1 0.8540 -5.0446 -0.8914 32 1 0.8533 -5.0451 0.8886 33 1 3.3860 -5.9233 -0.0002 34 1 4.6772 -7.2214 0.0109 35 1 6.2756 -9.0842 0.0015 36 1 1.4178 -10.0116 -0.0031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286608420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:44 Heat of formation + Delta-G solvation = -91.750561 kcal Electronic energy + Delta-G solvation = -21201.645902 eV Core-core repulsion = 17650.563811 eV Total energy + Delta-G solvation = -3551.082090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.47932 -41.13101 -39.49764 -38.38122 -36.96080 -36.49568 -35.19534 -33.13645 -31.96202 -30.74208 -28.51257 -25.87992 -24.78031 -24.37946 -23.82090 -22.31067 -21.93188 -19.73141 -19.64518 -18.58733 -18.58325 -18.08280 -17.17658 -16.86700 -16.69118 -16.62429 -16.42350 -15.53272 -15.43150 -15.12460 -14.90808 -14.59763 -14.22937 -14.16809 -13.92072 -13.70189 -13.46376 -12.76254 -12.75456 -12.50646 -12.32377 -12.23704 -12.20816 -11.62291 -11.59815 -11.21380 -10.99769 -10.52867 -10.20863 -9.95355 -9.48924 -8.16721 -6.27421 -0.51593 -0.07167 1.02914 1.20209 1.44187 1.44939 1.57383 1.63011 1.65250 2.15036 2.45020 2.58205 3.12533 3.17697 3.55141 3.67112 3.93698 3.97972 4.00915 4.23347 4.28248 4.60886 4.61177 4.76995 4.91975 5.00510 5.02721 5.09591 5.21550 5.25212 5.33635 5.43048 5.57439 5.76447 5.88461 5.88960 6.25865 6.48612 6.53546 6.91283 7.17345 7.42317 8.95427 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.048825 B = 0.002276 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.337836 B =12299.754435 C =12847.342133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.129 3.871 12 N -0.703 5.703 13 C 0.555 3.445 14 O -0.581 6.581 15 C -0.118 4.118 16 C -0.056 4.056 17 C -0.069 4.069 18 C 0.047 3.953 19 O -0.240 6.240 20 C 0.639 3.361 21 O -0.523 6.523 22 N -0.629 5.629 23 H 0.457 0.543 24 C 0.055 3.945 25 C -0.041 4.041 26 H 0.262 0.738 27 H -0.008 1.008 28 H -0.008 1.008 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.418 0.582 34 H 0.180 0.820 35 H 0.183 0.817 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.935 -20.404 0.014 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.790 3.210 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.087 0.913 9 C -0.017 4.017 10 C -0.141 4.141 11 C 0.005 3.995 12 N -0.355 5.355 13 C 0.343 3.657 14 O -0.462 6.462 15 C -0.122 4.122 16 C -0.075 4.075 17 C -0.087 4.087 18 C -0.001 4.001 19 O -0.145 6.145 20 C 0.393 3.607 21 O -0.408 6.408 22 N -0.287 5.287 23 H 0.303 0.697 24 C -0.043 4.043 25 C -0.062 4.062 26 H 0.071 0.929 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.257 0.743 34 H 0.198 0.802 35 H 0.200 0.800 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.473 -21.117 0.013 24.033 hybrid contribution -0.471 0.572 -0.001 0.741 sum 11.002 -20.545 0.012 23.305 Atomic orbital electron populations 1.70119 1.07926 1.27617 1.51989 1.26018 0.95723 1.03542 0.95009 0.85394 0.79349 0.78820 0.77438 1.17996 1.20845 1.20833 1.21734 0.93843 0.91956 1.49907 0.91309 1.18967 0.94559 0.93059 0.95093 1.21608 0.98427 0.91523 1.02506 1.21294 0.91912 0.85239 1.01070 1.45831 1.11519 1.04648 1.73536 1.18418 0.87807 0.83433 0.76026 1.90793 1.18204 1.85349 1.51875 1.19585 0.94216 0.91921 1.06477 1.21461 0.89740 1.01004 0.95292 1.20328 1.03289 0.84898 1.00217 1.19661 0.88366 0.86854 1.05174 1.84970 1.35022 1.14628 1.79886 1.18473 0.79554 0.84640 0.78023 1.91182 1.81810 1.10476 1.57352 1.43485 1.09862 1.05188 1.70161 0.69678 1.18242 0.94573 0.84341 1.07190 1.20081 0.99982 0.88616 0.97544 0.92937 0.98965 0.98971 0.90972 0.90983 0.92871 0.92876 0.74345 0.80248 0.79978 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.78 13.29 21.45 0.28 -55.50 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 42.42 29.54 68.60 2.03 44.44 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.54 -28.53 9.11 25.60 0.23 -28.30 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.02 4.97 29.85 0.15 1.17 16 10 C -0.10 -3.50 5.27 30.59 0.16 -3.34 16 11 C 0.13 3.96 5.67 86.38 0.49 4.45 16 12 N -0.70 -15.42 5.51 -466.13 -2.57 -17.99 16 13 C 0.56 13.27 7.77 86.74 0.67 13.94 16 14 O -0.58 -19.23 16.34 -3.96 -0.06 -19.29 16 15 C -0.12 -1.89 5.88 -20.08 -0.12 -2.00 16 16 C -0.06 -0.50 9.52 22.52 0.21 -0.28 16 17 C -0.07 -0.57 10.04 22.30 0.22 -0.35 16 18 C 0.05 0.65 7.36 22.78 0.17 0.82 16 19 O -0.24 -4.34 10.71 9.52 0.10 -4.24 16 20 C 0.64 12.56 9.44 129.79 1.22 13.78 16 21 O -0.52 -13.72 18.05 19.22 0.35 -13.37 16 22 N -0.63 -8.55 6.23 -430.09 -2.68 -11.23 16 23 H 0.46 3.75 8.96 -92.71 -0.83 2.92 16 24 C 0.06 0.79 7.24 38.26 0.28 1.07 16 25 C -0.04 -0.63 9.61 22.60 0.22 -0.42 16 26 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.42 5.80 6.49 -92.71 -0.60 5.19 16 34 H 0.18 0.49 6.39 -2.91 -0.02 0.47 16 35 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 36 H 0.15 2.38 7.65 -2.91 -0.02 2.35 16 Total: -1.00 -75.16 320.76 1.54 -73.62 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -0.29 Total: 2.87 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 4.38 Total: 0.69 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -4.96 Total: -84.71 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: 0.38 Total: -36.90 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -75.16 1.54 -73.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286608420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.135 kcal (2) G-P(sol) polarization free energy of solvation -75.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds