Wall clock time and date at job start Tue Mar 31 2020 07:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47006 * 2 1 4 4 C 1.50703 * 109.47264 * 119.99832 * 2 1 3 5 5 H 1.07993 * 120.00379 * 120.00023 * 4 2 1 6 6 C 1.37882 * 119.99806 * 300.00009 * 4 2 1 7 7 N 1.31515 * 119.99789 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00120 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46923 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47268 * 119.99769 * 8 6 4 11 11 H 1.48492 * 109.47075 * 240.00206 * 8 6 4 12 12 N 1.46496 * 109.47347 * 239.99816 * 2 1 3 13 13 C 1.46505 * 119.99722 * 300.00284 * 12 2 1 14 14 C 1.38435 * 120.00329 * 120.00007 * 12 2 1 15 15 N 1.30227 * 125.58328 * 0.02604 * 14 12 2 16 16 N 1.26258 * 117.65181 * 179.68986 * 15 14 12 17 17 C 1.30417 * 116.37528 * 0.54239 * 16 15 14 18 18 C 1.47736 * 126.14427 * 179.77123 * 17 16 15 19 19 C 1.39595 * 119.75272 * 359.66883 * 18 17 16 20 20 C 1.38306 * 119.04877 * 179.74337 * 19 18 17 21 21 C 1.38855 * 118.53721 * 0.52198 * 20 19 18 22 22 C 1.38253 * 119.40872 * 359.47401 * 21 20 19 23 23 N 1.31742 * 120.92452 * 0.28086 * 22 21 20 24 24 S 1.71282 * 125.58893 * 180.02562 * 14 12 2 25 25 H 1.09007 * 109.47170 * 300.00368 * 1 2 3 26 26 H 1.09006 * 109.47210 * 60.00166 * 1 2 3 27 27 H 1.08996 * 109.47339 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99861 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47132 * 269.99383 * 13 12 2 30 30 H 1.08996 * 109.47296 * 29.99659 * 13 12 2 31 31 H 1.08997 * 109.47088 * 149.99747 * 13 12 2 32 32 H 1.07994 * 120.47520 * 0.02562 * 19 18 17 33 33 H 1.08000 * 120.73478 * 180.24731 * 20 19 18 34 34 H 1.08002 * 120.29821 * 179.75894 * 21 20 19 35 35 H 1.08005 * 119.53660 * 180.25977 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1201 4.0081 9 1 3.1454 -2.2875 3.6039 10 1 3.1465 -0.1872 4.8165 11 1 1.1660 -1.5864 4.8161 12 7 2.0183 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4279 14 6 2.8142 -0.0179 -2.1074 15 7 3.1942 1.2239 -2.0100 16 7 3.9272 1.6861 -2.9282 17 6 4.2252 0.8677 -3.8990 18 6 5.0584 1.1810 -5.0780 19 6 5.5997 2.4594 -5.2238 20 6 6.3820 2.7353 -6.3305 21 6 6.5902 1.7281 -7.2634 22 6 6.0239 0.4839 -7.0569 23 7 5.2865 0.2440 -5.9919 24 16 3.4606 -0.6824 -3.5477 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7089 1.1616 3.4844 29 1 2.4156 -2.7377 -0.9716 30 1 0.6904 -2.3002 -0.9845 31 1 1.6237 -2.2853 -2.5000 32 1 5.4141 3.2208 -4.4807 33 1 6.8176 3.7139 -6.4685 34 1 7.1930 1.9136 -8.1401 35 1 6.1880 -0.3023 -7.7791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288889297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:16 Heat of formation + Delta-G solvation = 109.857494 kcal Electronic energy + Delta-G solvation = -19749.634062 eV Core-core repulsion = 16682.339975 eV Total energy + Delta-G solvation = -3067.294087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 8.79 seconds Orbital eigenvalues (eV) -40.52388 -39.85390 -37.10248 -33.28025 -32.69141 -32.24071 -29.90844 -29.17945 -26.83104 -25.39289 -24.61039 -23.56839 -23.16006 -21.18900 -19.11657 -18.52269 -17.25030 -16.49466 -16.12146 -16.03404 -15.34421 -15.17160 -14.89996 -14.07029 -13.96178 -13.73795 -13.35811 -13.17106 -12.79877 -12.70760 -11.95721 -11.86433 -11.68435 -11.24888 -11.03614 -10.85376 -10.61759 -10.29822 -10.28005 -10.09579 -9.96705 -9.54155 -9.52442 -9.43100 -9.16769 -8.69669 -8.55844 -7.07854 -6.18522 -4.28837 0.48415 1.18860 1.22858 1.66187 1.88336 3.20030 3.22801 3.28586 3.30980 3.45036 3.89040 3.93327 4.29575 4.70756 4.73830 4.95214 5.05315 5.12095 5.26084 5.38202 5.55825 5.67953 5.78735 5.85283 6.00397 6.04294 6.13264 6.54915 6.57072 6.68381 6.81906 7.05131 7.40701 7.58663 7.82011 7.84020 7.95956 8.11365 8.73310 9.28287 9.38114 10.85797 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.003644 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.047482 B = 7682.799472 C = 7931.543582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.071 0.929 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.528 5.528 13 C 0.089 3.911 14 C 0.289 3.711 15 N -0.349 5.349 16 N -0.178 5.178 17 C -0.044 4.044 18 C 0.227 3.773 19 C -0.138 4.138 20 C -0.072 4.072 21 C -0.181 4.181 22 C 0.106 3.894 23 N -0.481 5.481 24 S 0.097 5.903 25 H 0.100 0.900 26 H 0.015 0.985 27 H 0.033 0.967 28 H 0.265 0.735 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.663 -1.620 -16.763 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.163 3.837 3 H 0.089 0.911 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.239 5.239 13 C -0.054 4.054 14 C -0.081 4.081 15 N -0.202 5.202 16 N -0.019 5.019 17 C -0.324 4.324 18 C 0.088 3.912 19 C -0.161 4.161 20 C -0.098 4.098 21 C -0.202 4.202 22 C -0.052 4.052 23 N -0.192 5.192 24 S 0.336 5.664 25 H 0.118 0.882 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.973 -2.269 -16.076 17.299 hybrid contribution 0.680 0.380 0.805 1.120 sum 6.653 -1.889 -15.271 16.764 Atomic orbital electron populations 1.22157 0.97545 0.99736 1.01382 1.19310 0.91236 0.94446 0.78691 0.91097 1.21303 1.32441 1.13391 0.89938 0.92020 1.24877 0.94733 0.94912 0.98996 1.69875 1.35954 1.22351 1.24003 0.86381 0.78652 0.79591 0.82459 1.19758 1.20740 1.20802 1.47079 1.45535 1.10610 1.20667 1.21816 1.02731 0.80844 1.00005 1.26181 0.95068 0.92969 0.93891 1.71502 1.18633 1.08720 1.21364 1.71497 1.06112 1.27682 0.96608 1.26385 1.11259 0.93211 1.01546 1.18200 0.93157 0.89846 0.90023 1.22090 0.97709 0.97239 0.99111 1.21543 0.95727 0.99615 0.92953 1.22172 1.02395 0.94747 1.00846 1.22641 0.92589 0.96051 0.93953 1.67613 1.15066 1.34089 1.02429 1.84459 1.49022 1.15447 1.17463 0.88197 0.96621 0.94817 0.92477 0.91960 0.89182 0.92538 0.83622 0.84470 0.84762 0.82467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.95 37.16 0.33 -3.09 16 2 C 0.26 6.49 2.71 -69.09 -0.19 6.30 16 3 H 0.07 1.99 7.15 -51.93 -0.37 1.62 16 4 C -0.53 -13.93 8.37 -34.44 -0.29 -14.22 16 5 H 0.06 1.61 7.65 -52.49 -0.40 1.20 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.53 -11.13 2.85 -177.42 -0.51 -11.64 16 13 C 0.09 1.49 9.67 59.85 0.58 2.07 16 14 C 0.29 6.08 7.84 -87.41 -0.68 5.39 16 15 N -0.35 -8.01 10.60 29.89 0.32 -7.69 16 16 N -0.18 -3.69 11.30 32.99 0.37 -3.31 16 17 C -0.04 -0.80 7.49 -14.27 -0.11 -0.91 16 18 C 0.23 3.53 6.75 -83.03 -0.56 2.97 16 19 C -0.14 -1.79 9.73 -39.05 -0.38 -2.17 16 20 C -0.07 -0.70 10.16 -39.33 -0.40 -1.10 16 21 C -0.18 -1.57 10.11 -39.35 -0.40 -1.97 16 22 C 0.11 1.11 11.17 -17.58 -0.20 0.91 16 23 N -0.48 -6.87 10.15 -9.86 -0.10 -6.97 16 24 S 0.10 1.68 21.67 -107.50 -2.33 -0.64 16 25 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.44 6.43 -51.93 -0.33 1.11 16 31 H 0.06 0.79 7.09 -51.93 -0.37 0.42 16 32 H 0.15 1.87 7.84 -52.49 -0.41 1.46 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 314.65 15.07 4.74 4.74 Total: -1.00 -30.46 314.65 -8.08 -38.54 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.80 Total: -0.88 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.38 Total: -4.11 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.71 Total: -53.23 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.33 Total: -0.64 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.46 -8.08 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288889297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.393 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.79 seconds