Wall clock time and date at job start Tue Mar 31 2020 07:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47006 * 2 1 4 4 C 1.50703 * 109.47264 * 119.99832 * 2 1 3 5 5 H 1.07993 * 120.00379 * 120.00023 * 4 2 1 6 6 C 1.37882 * 119.99806 * 300.00009 * 4 2 1 7 7 N 1.31515 * 119.99789 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00120 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46923 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47268 * 119.99769 * 8 6 4 11 11 H 1.48492 * 109.47075 * 240.00206 * 8 6 4 12 12 N 1.46496 * 109.47347 * 239.99816 * 2 1 3 13 13 C 1.46505 * 119.99722 * 300.00284 * 12 2 1 14 14 C 1.38435 * 120.00329 * 120.00007 * 12 2 1 15 15 N 1.30227 * 125.58328 * 0.02604 * 14 12 2 16 16 N 1.26258 * 117.65181 * 179.68986 * 15 14 12 17 17 C 1.30417 * 116.37528 * 0.54239 * 16 15 14 18 18 C 1.47736 * 126.14427 * 179.77123 * 17 16 15 19 19 C 1.39595 * 119.75272 * 359.66883 * 18 17 16 20 20 C 1.38306 * 119.04877 * 179.74337 * 19 18 17 21 21 C 1.38855 * 118.53721 * 0.52198 * 20 19 18 22 22 C 1.38253 * 119.40872 * 359.47401 * 21 20 19 23 23 N 1.31742 * 120.92452 * 0.28086 * 22 21 20 24 24 S 1.71282 * 125.58893 * 180.02562 * 14 12 2 25 25 H 1.09007 * 109.47170 * 300.00368 * 1 2 3 26 26 H 1.09006 * 109.47210 * 60.00166 * 1 2 3 27 27 H 1.08996 * 109.47339 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99861 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47132 * 269.99383 * 13 12 2 30 30 H 1.08996 * 109.47296 * 29.99659 * 13 12 2 31 31 H 1.08997 * 109.47088 * 149.99747 * 13 12 2 32 32 H 1.07994 * 120.47520 * 0.02562 * 19 18 17 33 33 H 1.08000 * 120.73478 * 180.24731 * 20 19 18 34 34 H 1.08002 * 120.29821 * 179.75894 * 21 20 19 35 35 H 1.08005 * 119.53660 * 180.25977 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1201 4.0081 9 1 3.1454 -2.2875 3.6039 10 1 3.1465 -0.1872 4.8165 11 1 1.1660 -1.5864 4.8161 12 7 2.0183 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4279 14 6 2.8142 -0.0179 -2.1074 15 7 3.1942 1.2239 -2.0100 16 7 3.9272 1.6861 -2.9282 17 6 4.2252 0.8677 -3.8990 18 6 5.0584 1.1810 -5.0780 19 6 5.5997 2.4594 -5.2238 20 6 6.3820 2.7353 -6.3305 21 6 6.5902 1.7281 -7.2634 22 6 6.0239 0.4839 -7.0569 23 7 5.2865 0.2440 -5.9919 24 16 3.4606 -0.6824 -3.5477 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7089 1.1616 3.4844 29 1 2.4156 -2.7377 -0.9716 30 1 0.6904 -2.3002 -0.9845 31 1 1.6237 -2.2853 -2.5000 32 1 5.4141 3.2208 -4.4807 33 1 6.8176 3.7139 -6.4685 34 1 7.1930 1.9136 -8.1401 35 1 6.1880 -0.3023 -7.7791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288889297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:13 Heat of formation + Delta-G solvation = 91.067312 kcal Electronic energy + Delta-G solvation = -19750.448865 eV Core-core repulsion = 16682.339975 eV Total energy + Delta-G solvation = -3068.108890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.96639 -40.86087 -38.71756 -35.12502 -33.71461 -33.31209 -31.63115 -30.58485 -28.15350 -27.36628 -26.08686 -24.63643 -24.22635 -22.74841 -20.60706 -19.97122 -18.56890 -18.38093 -17.19113 -17.04955 -16.85779 -16.71789 -16.25910 -15.50411 -15.27573 -14.93108 -14.69840 -14.51910 -14.17839 -13.96804 -13.55190 -13.30083 -13.05371 -12.83845 -12.75980 -12.62945 -12.36846 -12.15150 -11.87669 -11.52739 -11.18554 -10.97928 -10.88116 -10.73005 -10.57241 -10.49736 -9.87458 -8.64373 -8.16297 -6.36128 -0.71670 -0.23170 0.33102 0.41009 0.49357 1.39157 1.41502 1.52090 1.77442 1.96555 2.39283 2.80434 2.91517 3.09541 3.70349 3.94051 4.01838 4.12147 4.17909 4.22795 4.40732 4.48047 4.62727 4.66690 4.82271 4.87979 4.88511 4.95697 5.19191 5.27711 5.30110 5.53577 5.70093 5.75267 5.97971 6.09865 6.27084 6.72417 6.90716 7.33948 7.78758 8.85189 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.003644 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.047482 B = 7682.799472 C = 7931.543582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.542 4.542 5 H 0.059 0.941 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.543 5.543 13 C 0.088 3.912 14 C 0.261 3.739 15 N -0.395 5.395 16 N -0.216 5.216 17 C -0.027 4.027 18 C 0.181 3.819 19 C -0.146 4.146 20 C -0.068 4.068 21 C -0.153 4.153 22 C 0.098 3.902 23 N -0.503 5.503 24 S 0.161 5.839 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.266 0.734 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 -2.781 -19.670 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.170 3.830 3 H 0.042 0.958 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.790 3.210 9 H -0.192 1.192 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.257 5.257 13 C -0.054 4.054 14 C -0.110 4.110 15 N -0.248 5.248 16 N -0.055 5.055 17 C -0.310 4.310 18 C 0.043 3.957 19 C -0.170 4.170 20 C -0.094 4.094 21 C -0.173 4.173 22 C -0.061 4.061 23 N -0.214 5.214 24 S 0.401 5.599 25 H 0.093 0.907 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.190 0.810 34 H 0.198 0.802 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 7.844 -3.427 -18.998 20.838 hybrid contribution 0.326 0.805 1.335 1.593 sum 8.170 -2.622 -17.664 19.637 Atomic orbital electron populations 1.21948 0.96632 1.00510 1.00365 1.18826 0.91825 0.92341 0.79981 0.95826 1.21554 1.32307 1.13292 0.90936 0.92230 1.25668 0.94922 0.95561 1.01802 1.70008 1.36963 1.23594 1.24586 0.85410 0.78261 0.78441 0.78923 1.19153 1.21125 1.19785 1.46875 1.46706 1.11895 1.20197 1.22008 1.02980 0.78557 1.01872 1.26328 0.95884 0.93224 0.95550 1.71425 1.19863 1.10454 1.23037 1.71448 1.07856 1.28541 0.97616 1.27191 1.09196 0.93273 1.01297 1.18160 0.95560 0.91539 0.90422 1.22180 0.98328 0.96110 1.00343 1.21990 0.94317 1.01592 0.91511 1.22713 1.00240 0.93199 1.01159 1.23359 0.91512 0.98026 0.93189 1.67531 1.16303 1.34248 1.03362 1.84041 1.47468 1.13968 1.14420 0.90721 0.95998 0.93009 0.92438 0.91555 0.88724 0.89875 0.84662 0.80956 0.80193 0.79028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.43 8.95 71.98 0.64 -5.78 16 2 C 0.27 14.02 2.71 44.25 0.12 14.14 16 3 H 0.02 1.43 7.15 -2.39 -0.02 1.41 16 4 C -0.54 -29.18 8.37 25.60 0.21 -28.97 16 5 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -51.80 11.32 21.45 0.24 -51.55 16 8 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 N -0.54 -23.58 2.85 -715.22 -2.04 -25.62 16 13 C 0.09 2.88 9.67 127.77 1.24 4.11 16 14 C 0.26 11.33 7.84 179.23 1.40 12.74 16 15 N -0.40 -19.25 10.60 -59.35 -0.63 -19.88 16 16 N -0.22 -9.42 11.30 -49.55 -0.56 -9.98 16 17 C -0.03 -1.02 7.49 87.42 0.65 -0.36 16 18 C 0.18 5.51 6.75 41.83 0.28 5.80 16 19 C -0.15 -3.63 9.73 22.61 0.22 -3.41 16 20 C -0.07 -1.06 10.16 22.43 0.23 -0.84 16 21 C -0.15 -1.86 10.11 22.42 0.23 -1.64 16 22 C 0.10 1.64 11.17 84.71 0.95 2.59 16 23 N -0.50 -13.31 10.15 -185.09 -1.88 -15.19 16 24 S 0.16 5.56 21.67 -56.49 -1.22 4.33 16 25 H 0.07 3.92 6.07 -2.38 -0.01 3.91 16 26 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.05 2.20 6.66 -2.39 -0.02 2.18 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 2.97 6.43 -2.39 -0.02 2.95 16 31 H 0.08 2.22 7.09 -2.39 -0.02 2.20 16 32 H 0.14 3.56 7.84 -2.91 -0.02 3.54 16 33 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -70.85 314.65 3.68 -67.17 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 1.12 Total: 5.89 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 6.62 Total: -0.04 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -4.87 Total: -122.22 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.22 Total: 4.33 kcal Total: -70.85 3.68 -67.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288889297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.241 kcal (2) G-P(sol) polarization free energy of solvation -70.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds