Wall clock time and date at job start Tue Mar 31 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99973 * 2 1 4 4 H 1.48505 * 109.46930 * 240.00556 * 3 2 1 5 5 H 1.48505 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46908 * 120.00388 * 3 2 1 7 7 C 1.37882 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99614 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46864 * 175.45282 * 9 7 2 11 11 C 1.46906 * 111.00146 * 199.19918 * 10 9 7 12 12 C 1.50700 * 109.46881 * 71.44823 * 11 10 9 13 13 C 1.35337 * 127.92422 * 84.40252 * 12 11 10 14 14 N 1.31744 * 112.46482 * 179.85157 * 13 12 11 15 15 N 1.27569 * 118.27142 * 0.47290 * 14 13 12 16 16 S 1.56513 * 109.22474 * 359.73703 * 15 14 13 17 17 C 1.46910 * 110.99937 * 75.24579 * 10 9 7 18 18 C 1.50702 * 109.46942 * 189.99919 * 17 10 9 19 19 C 1.38224 * 119.61761 * 95.00120 * 18 17 10 20 20 C 1.38629 * 119.16193 * 179.97438 * 19 18 17 21 21 C 1.38673 * 118.41970 * 0.02562 * 20 19 18 22 22 C 1.38179 * 119.16172 * 0.02562 * 21 20 19 23 23 N 1.31849 * 119.61678 * 274.72639 * 18 17 10 24 24 H 0.97001 * 119.99554 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47491 * 55.45533 * 9 7 2 26 26 H 1.09006 * 109.47466 * 295.44884 * 9 7 2 27 27 H 1.09002 * 109.47063 * 191.44373 * 11 10 9 28 28 H 1.08993 * 109.46876 * 311.44597 * 11 10 9 29 29 H 1.08003 * 123.76978 * 0.02562 * 13 12 11 30 30 H 1.08997 * 109.46811 * 310.00339 * 17 10 9 31 31 H 1.09001 * 109.46720 * 70.00496 * 17 10 9 32 32 H 1.08003 * 120.41694 * 359.95851 * 19 18 17 33 33 H 1.07995 * 120.78657 * 179.97438 * 20 19 18 34 34 H 1.07995 * 120.41743 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.61560 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2018 -3.6134 -0.1110 11 6 1.5282 -4.8372 -0.5657 12 6 1.1534 -4.6940 -2.0183 13 6 1.9259 -4.9309 -3.1039 14 7 1.2869 -4.7093 -4.2345 15 7 0.0774 -4.3081 -4.1764 16 16 -0.3531 -4.1846 -2.6767 17 6 2.8993 -3.8385 1.1623 18 6 4.0296 -4.8125 0.9505 19 6 5.3055 -4.3370 0.7123 20 6 6.3383 -5.2414 0.5193 21 6 6.0478 -6.5963 0.5728 22 6 4.7477 -6.9971 0.8145 23 7 3.7911 -6.1083 0.9999 24 1 -0.4849 0.8401 0.0004 25 1 0.5644 -2.5222 -0.8467 26 1 0.6873 -2.5932 0.9276 27 1 2.1996 -5.6875 -0.4458 28 1 0.6282 -4.9984 0.0277 29 1 2.9510 -5.2668 -3.0496 30 1 3.2983 -2.8932 1.5300 31 1 2.2002 -4.2465 1.8923 32 1 5.4953 -3.2744 0.6767 33 1 7.3450 -4.8988 0.3309 34 1 6.8279 -7.3289 0.4274 35 1 4.5132 -8.0505 0.8572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289503764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:48 Heat of formation + Delta-G solvation = 116.670470 kcal Electronic energy + Delta-G solvation = -20342.181840 eV Core-core repulsion = 17275.183186 eV Total energy + Delta-G solvation = -3066.998654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32841 -40.06138 -36.96974 -32.87153 -32.55963 -32.21228 -31.01606 -28.15481 -27.26296 -25.48176 -23.79475 -23.32783 -22.13854 -21.16475 -19.86680 -18.59240 -16.75377 -16.52326 -16.15756 -15.55303 -15.37848 -15.11771 -14.63788 -14.40830 -13.93417 -13.90499 -13.20915 -13.16477 -12.69210 -12.50548 -12.18742 -11.83721 -11.64222 -11.30711 -11.16272 -10.97662 -10.77288 -10.63649 -10.08386 -9.77758 -9.67214 -9.53366 -9.38624 -9.23840 -9.05514 -8.84977 -8.49943 -7.52487 -6.11439 -4.13425 0.70558 1.23310 1.37440 1.59592 2.19382 2.71685 3.27847 3.33244 3.35216 3.86626 4.35339 4.43245 4.65567 4.87166 4.89282 4.96761 5.15862 5.18768 5.25008 5.28185 5.36534 5.67955 5.79839 5.87823 5.97091 6.00803 6.11726 6.25101 6.26409 6.39023 6.82129 6.97475 7.11302 7.64692 7.86422 7.99423 8.12370 8.19159 8.34744 8.91996 9.50966 10.98916 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.010166 B = 0.007153 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.720286 B = 3913.703066 C = 5942.035657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.188 3.812 10 N -0.524 5.524 11 C 0.125 3.875 12 C -0.220 4.220 13 C -0.001 4.001 14 N -0.251 5.251 15 N -0.310 5.310 16 S 0.435 5.565 17 C 0.110 3.890 18 C 0.146 3.854 19 C -0.149 4.149 20 C -0.078 4.078 21 C -0.184 4.184 22 C 0.094 3.906 23 N -0.485 5.485 24 H 0.263 0.737 25 H 0.036 0.964 26 H -0.003 1.003 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.192 0.808 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 -12.411 2.144 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.063 3.937 10 N -0.249 5.249 11 C -0.005 4.005 12 C -0.359 4.359 13 C -0.166 4.166 14 N -0.117 5.117 15 N -0.290 5.290 16 S 0.569 5.431 17 C -0.018 4.018 18 C 0.009 3.991 19 C -0.169 4.169 20 C -0.104 4.104 21 C -0.204 4.204 22 C -0.063 4.063 23 N -0.195 5.195 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.014 0.986 27 H 0.120 0.880 28 H 0.064 0.936 29 H 0.209 0.791 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.171 -11.941 0.742 13.033 hybrid contribution 2.274 0.649 1.034 2.581 sum 7.445 -11.291 1.777 13.641 Atomic orbital electron populations 1.69924 1.05991 1.27107 1.50344 1.24961 0.94877 0.99244 0.95254 0.86587 0.79533 0.82828 0.78652 1.20212 1.21265 1.20193 1.21035 0.93470 0.89603 1.50726 0.91858 1.19911 0.90197 0.87188 0.96399 1.62161 1.31229 1.04150 1.27408 1.20485 0.98564 0.95655 0.85843 1.27208 0.99576 1.06046 1.03052 1.23470 1.02868 1.04179 0.86062 1.71219 1.00005 1.13221 1.27243 1.78686 1.10988 1.22247 1.17038 1.81598 1.15729 1.46304 0.99429 1.20955 0.92541 0.96735 0.91571 1.21461 0.94310 0.90614 0.92763 1.22043 0.93325 1.01489 1.00087 1.21577 0.99513 0.93216 0.96127 1.22040 0.98369 0.96638 1.03391 1.22675 0.88991 0.99140 0.95504 1.67524 1.36120 1.02574 1.13302 0.92688 0.94579 0.98557 0.88024 0.93631 0.79123 0.87878 0.93641 0.84447 0.85203 0.85371 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.38 8.60 -34.44 -0.30 -13.68 16 8 H 0.06 1.63 7.63 -52.49 -0.40 1.23 16 9 C 0.19 4.47 4.59 -4.98 -0.02 4.45 16 10 N -0.52 -10.27 4.37 -238.96 -1.04 -11.31 16 11 C 0.13 2.15 5.42 -4.97 -0.03 2.12 16 12 C -0.22 -3.85 5.49 -35.34 -0.19 -4.04 16 13 C 0.00 -0.02 11.53 -18.62 -0.21 -0.23 16 14 N -0.25 -4.77 11.68 29.32 0.34 -4.43 16 15 N -0.31 -5.93 12.54 60.35 0.76 -5.17 16 16 S 0.44 7.59 22.16 -107.50 -2.38 5.20 16 17 C 0.11 1.92 5.11 -4.97 -0.03 1.89 16 18 C 0.15 2.22 5.74 -82.59 -0.47 1.75 16 19 C -0.15 -2.02 9.72 -39.44 -0.38 -2.40 16 20 C -0.08 -0.86 10.18 -39.28 -0.40 -1.26 16 21 C -0.18 -1.88 10.11 -39.44 -0.40 -2.27 16 22 C 0.09 1.08 11.18 -17.55 -0.20 0.88 16 23 N -0.49 -6.97 8.53 -9.47 -0.08 -7.05 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.04 0.91 6.01 -51.93 -0.31 0.59 16 26 H 0.00 -0.08 8.01 -51.93 -0.42 -0.50 16 27 H 0.10 1.63 5.63 -51.93 -0.29 1.34 16 28 H 0.05 0.76 8.06 -51.93 -0.42 0.35 16 29 H 0.19 2.83 8.06 -52.48 -0.42 2.40 16 30 H 0.10 1.86 7.19 -51.93 -0.37 1.49 16 31 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -30.18 315.79 -8.55 -38.73 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -3.88 Total: -0.75 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.73 Total: -11.31 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.71 Total: -52.54 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 7.59 SS G_CDS: -2.38 Total: 5.20 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.18 -8.55 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289503764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.400 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds