Wall clock time and date at job start Tue Mar 31 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99973 * 2 1 4 4 H 1.48505 * 109.46930 * 240.00556 * 3 2 1 5 5 H 1.48505 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46908 * 120.00388 * 3 2 1 7 7 C 1.37882 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99614 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46864 * 175.45282 * 9 7 2 11 11 C 1.46906 * 111.00146 * 199.19918 * 10 9 7 12 12 C 1.50700 * 109.46881 * 71.44823 * 11 10 9 13 13 C 1.35337 * 127.92422 * 84.40252 * 12 11 10 14 14 N 1.31744 * 112.46482 * 179.85157 * 13 12 11 15 15 N 1.27569 * 118.27142 * 0.47290 * 14 13 12 16 16 S 1.56513 * 109.22474 * 359.73703 * 15 14 13 17 17 C 1.46910 * 110.99937 * 75.24579 * 10 9 7 18 18 C 1.50702 * 109.46942 * 189.99919 * 17 10 9 19 19 C 1.38224 * 119.61761 * 95.00120 * 18 17 10 20 20 C 1.38629 * 119.16193 * 179.97438 * 19 18 17 21 21 C 1.38673 * 118.41970 * 0.02562 * 20 19 18 22 22 C 1.38179 * 119.16172 * 0.02562 * 21 20 19 23 23 N 1.31849 * 119.61678 * 274.72639 * 18 17 10 24 24 H 0.97001 * 119.99554 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47491 * 55.45533 * 9 7 2 26 26 H 1.09006 * 109.47466 * 295.44884 * 9 7 2 27 27 H 1.09002 * 109.47063 * 191.44373 * 11 10 9 28 28 H 1.08993 * 109.46876 * 311.44597 * 11 10 9 29 29 H 1.08003 * 123.76978 * 0.02562 * 13 12 11 30 30 H 1.08997 * 109.46811 * 310.00339 * 17 10 9 31 31 H 1.09001 * 109.46720 * 70.00496 * 17 10 9 32 32 H 1.08003 * 120.41694 * 359.95851 * 19 18 17 33 33 H 1.07995 * 120.78657 * 179.97438 * 20 19 18 34 34 H 1.07995 * 120.41743 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.61560 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2018 -3.6134 -0.1110 11 6 1.5282 -4.8372 -0.5657 12 6 1.1534 -4.6940 -2.0183 13 6 1.9259 -4.9309 -3.1039 14 7 1.2869 -4.7093 -4.2345 15 7 0.0774 -4.3081 -4.1764 16 16 -0.3531 -4.1846 -2.6767 17 6 2.8993 -3.8385 1.1623 18 6 4.0296 -4.8125 0.9505 19 6 5.3055 -4.3370 0.7123 20 6 6.3383 -5.2414 0.5193 21 6 6.0478 -6.5963 0.5728 22 6 4.7477 -6.9971 0.8145 23 7 3.7911 -6.1083 0.9999 24 1 -0.4849 0.8401 0.0004 25 1 0.5644 -2.5222 -0.8467 26 1 0.6873 -2.5932 0.9276 27 1 2.1996 -5.6875 -0.4458 28 1 0.6282 -4.9984 0.0277 29 1 2.9510 -5.2668 -3.0496 30 1 3.2983 -2.8932 1.5300 31 1 2.2002 -4.2465 1.8923 32 1 5.4953 -3.2744 0.6767 33 1 7.3450 -4.8988 0.3309 34 1 6.8279 -7.3289 0.4274 35 1 4.5132 -8.0505 0.8572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289503764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:44 Heat of formation + Delta-G solvation = 97.277935 kcal Electronic energy + Delta-G solvation = -20343.022764 eV Core-core repulsion = 17275.183186 eV Total energy + Delta-G solvation = -3067.839578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -41.73101 -41.08564 -38.46189 -34.82037 -33.79087 -33.24254 -32.29526 -29.77877 -28.78616 -26.90326 -25.42803 -24.26347 -23.58280 -22.44014 -21.35487 -20.02006 -18.52156 -17.69413 -17.27450 -16.89812 -16.81484 -16.34803 -16.22449 -15.84873 -15.42281 -15.23786 -14.42556 -14.24697 -14.07370 -13.94308 -13.71934 -13.26503 -13.16506 -12.82808 -12.76698 -12.55202 -12.31974 -12.24783 -11.90730 -11.39814 -11.11269 -10.84098 -10.69686 -10.59424 -10.50278 -10.25032 -9.84211 -9.12958 -8.17727 -6.25798 -0.73106 0.18941 0.28191 0.47952 0.76634 1.31109 1.41933 1.43816 1.50883 2.40785 2.84358 3.15455 3.27258 3.35823 3.58663 3.76512 3.89186 3.96276 4.14195 4.31045 4.36214 4.51710 4.60581 4.67270 4.68344 4.77191 4.92305 4.98187 5.16094 5.19015 5.37542 5.42061 5.66503 5.91323 6.03906 6.24103 6.48760 6.76401 6.87108 7.15607 7.42509 8.92195 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.010166 B = 0.007153 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.720286 B = 3913.703066 C = 5942.035657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.199 3.801 10 N -0.527 5.527 11 C 0.132 3.868 12 C -0.228 4.228 13 C 0.005 3.995 14 N -0.268 5.268 15 N -0.331 5.331 16 S 0.449 5.551 17 C 0.116 3.884 18 C 0.124 3.876 19 C -0.164 4.164 20 C -0.076 4.076 21 C -0.170 4.170 22 C 0.087 3.913 23 N -0.507 5.507 24 H 0.264 0.736 25 H 0.022 0.978 26 H -0.028 1.028 27 H 0.118 0.882 28 H 0.047 0.953 29 H 0.217 0.783 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.132 0.868 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.747 -13.703 2.143 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.252 5.252 11 C 0.002 3.998 12 C -0.367 4.367 13 C -0.160 4.160 14 N -0.133 5.133 15 N -0.310 5.310 16 S 0.584 5.416 17 C -0.012 4.012 18 C -0.012 4.012 19 C -0.184 4.184 20 C -0.102 4.102 21 C -0.189 4.189 22 C -0.070 4.070 23 N -0.217 5.217 24 H 0.072 0.928 25 H 0.040 0.960 26 H -0.010 1.010 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.233 0.767 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.150 0.850 33 H 0.177 0.823 34 H 0.184 0.816 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.636 -13.243 0.742 15.305 hybrid contribution 1.580 0.924 1.078 2.124 sum 9.216 -12.319 1.819 15.492 Atomic orbital electron populations 1.70039 1.07368 1.27800 1.51608 1.25751 0.95640 1.02574 0.95095 0.85623 0.78354 0.78849 0.78941 1.20063 1.21168 1.18938 1.21376 0.93669 0.90817 1.49887 0.91851 1.19596 0.90323 0.88277 0.94478 1.62044 1.30198 1.04216 1.28787 1.20477 0.98819 0.94992 0.85528 1.27333 0.99714 1.06367 1.03323 1.23820 1.03653 1.03224 0.85334 1.71229 1.00126 1.13781 1.28121 1.78607 1.11398 1.23006 1.17997 1.81529 1.15808 1.45602 0.98707 1.20811 0.93161 0.96963 0.90304 1.21014 0.93927 0.90767 0.95540 1.22089 0.93547 1.01908 1.00893 1.21934 1.00066 0.93311 0.94842 1.22465 0.98688 0.96966 1.00793 1.23244 0.89216 0.99947 0.94613 1.67424 1.37738 1.02408 1.14155 0.92758 0.95981 1.00980 0.86385 0.93498 0.76702 0.89475 0.94296 0.85024 0.82332 0.81624 0.80387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.52 13.29 21.45 0.28 -53.23 16 2 C 0.01 0.44 5.46 84.66 0.46 0.91 16 3 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.52 -27.70 8.60 25.60 0.22 -27.48 16 8 H 0.06 3.30 7.63 -2.91 -0.02 3.28 16 9 C 0.20 9.75 4.59 85.55 0.39 10.15 16 10 N -0.53 -20.92 4.37 -909.92 -3.98 -24.89 16 11 C 0.13 4.50 5.42 85.56 0.46 4.96 16 12 C -0.23 -7.88 5.49 25.02 0.14 -7.75 16 13 C 0.00 0.15 11.53 84.04 0.97 1.12 16 14 N -0.27 -9.98 11.68 -61.14 -0.71 -10.69 16 15 N -0.33 -12.61 12.54 37.02 0.46 -12.15 16 16 S 0.45 15.76 22.16 -56.49 -1.25 14.50 16 17 C 0.12 4.11 5.11 85.56 0.44 4.55 16 18 C 0.12 3.69 5.74 42.55 0.24 3.93 16 19 C -0.16 -4.22 9.72 22.36 0.22 -4.00 16 20 C -0.08 -1.42 10.18 22.47 0.23 -1.19 16 21 C -0.17 -2.72 10.11 22.36 0.23 -2.49 16 22 C 0.09 1.70 11.18 84.67 0.95 2.65 16 23 N -0.51 -13.70 8.53 -183.89 -1.57 -15.27 16 24 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 25 H 0.02 1.14 6.01 -2.39 -0.01 1.13 16 26 H -0.03 -1.45 8.01 -2.38 -0.02 -1.47 16 27 H 0.12 3.67 5.63 -2.39 -0.01 3.66 16 28 H 0.05 1.58 8.06 -2.39 -0.02 1.57 16 29 H 0.22 5.90 8.06 -2.91 -0.02 5.88 16 30 H 0.09 3.29 7.19 -2.39 -0.02 3.27 16 31 H 0.04 1.39 8.12 -2.39 -0.02 1.37 16 32 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -65.24 315.79 1.32 -63.92 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 1.11 Total: 7.32 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 4.95 Total: -14.64 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -5.51 Total: -116.23 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 15.76 SS G_CDS: -1.25 Total: 14.50 kcal Total: -65.24 1.32 -63.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289503764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.201 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds