Wall clock time and date at job start Tue Mar 31 2020 07:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46864 * 2 1 4 4 H 1.09005 * 109.47322 * 305.00042 * 3 2 1 5 5 C 1.50698 * 109.47180 * 184.99494 * 3 2 1 6 6 H 1.08000 * 120.00167 * 240.00215 * 5 3 2 7 7 C 1.37880 * 119.99712 * 60.00230 * 5 3 2 8 8 N 1.31506 * 120.00066 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99849 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47191 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47172 * 119.99974 * 9 7 5 12 12 H 1.48492 * 109.47391 * 240.00023 * 9 7 5 13 13 N 1.46503 * 109.47189 * 64.99854 * 3 2 1 14 14 C 1.38439 * 119.99721 * 274.99999 * 13 3 2 15 15 N 1.30217 * 125.58760 * 359.95680 * 14 13 3 16 16 N 1.26261 * 117.65709 * 179.74385 * 15 14 13 17 17 C 1.30417 * 116.37114 * 0.53986 * 16 15 14 18 18 C 1.47736 * 126.14836 * 179.76643 * 17 16 15 19 19 C 1.39603 * 119.74669 * 359.67541 * 18 17 16 20 20 C 1.38306 * 119.04682 * 179.76405 * 19 18 17 21 21 C 1.38855 * 118.53729 * 0.52122 * 20 19 18 22 22 C 1.38253 * 119.40873 * 359.45500 * 21 20 19 23 23 N 1.31743 * 120.92431 * 0.30147 * 22 21 20 24 24 S 1.71289 * 125.58301 * 179.97438 * 14 13 3 25 25 H 1.09006 * 109.46676 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47692 * 300.00221 * 1 2 3 27 27 H 1.09007 * 109.47185 * 60.00372 * 1 2 3 28 28 H 1.08993 * 109.47898 * 240.00291 * 2 1 3 29 29 H 1.09000 * 109.47096 * 119.98963 * 2 1 3 30 30 H 0.97007 * 120.00465 * 180.02562 * 8 7 5 31 31 H 0.96993 * 120.00310 * 95.00087 * 13 3 2 32 32 H 1.07994 * 120.47699 * 0.02562 * 19 18 17 33 33 H 1.08000 * 120.73512 * 180.27704 * 20 19 18 34 34 H 1.08002 * 120.29822 * 179.73520 * 21 20 19 35 35 H 1.08006 * 119.53660 * 180.27942 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1237 6 1 4.1471 1.8890 0.6525 7 6 4.1433 0.8786 -1.2278 8 7 3.4063 0.3368 -2.1727 9 14 6.0049 0.8815 -1.3816 10 1 6.5986 1.5465 -0.1939 11 1 6.4971 -0.5173 -1.4627 12 1 6.3990 1.6169 -2.6099 13 7 1.6523 2.0976 1.2518 14 6 0.4019 2.6798 1.3700 15 7 -0.5109 2.7096 0.4418 16 7 -1.6047 3.2788 0.7136 17 6 -1.7083 3.7952 1.9066 18 6 -2.8822 4.5105 2.4477 19 6 -4.0145 4.6861 1.6502 20 6 -5.1072 5.3536 2.1731 21 6 -5.0307 5.8349 3.4733 22 6 -3.8783 5.6256 4.2079 23 7 -2.8523 4.9822 3.6894 24 16 -0.1978 3.4794 2.7610 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8934 -0.5137 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8294 -0.0617 -2.9494 31 1 2.2717 2.1233 1.9978 32 1 -4.0385 4.3025 0.6410 33 1 -5.9988 5.5009 1.5817 34 1 -5.8656 6.3640 3.9085 35 1 -3.8183 5.9951 5.2211 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289819246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:15 Heat of formation + Delta-G solvation = 82.337730 kcal Electronic energy + Delta-G solvation = -19762.925616 eV Core-core repulsion = 16694.438182 eV Total energy + Delta-G solvation = -3068.487434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 11.71 seconds Orbital eigenvalues (eV) -42.01092 -40.86150 -38.40812 -34.99800 -33.65661 -33.29648 -32.80361 -30.47014 -28.88633 -26.81952 -25.13556 -24.42709 -24.11680 -22.37898 -20.64404 -20.40304 -18.75247 -18.32294 -17.23493 -17.07932 -16.95473 -16.78777 -16.27947 -15.70274 -15.16316 -14.91720 -14.64785 -14.37231 -14.19818 -13.95045 -13.67540 -13.22209 -12.93552 -12.79267 -12.73217 -12.40659 -12.12254 -11.88344 -11.62016 -11.56848 -11.10409 -10.93266 -10.90329 -10.73386 -10.54605 -10.49589 -9.89653 -8.73656 -8.20322 -6.38045 -0.71326 -0.24737 0.33521 0.41075 0.50509 1.42684 1.44609 1.55630 1.79750 2.23738 2.44105 2.86756 2.91904 3.09753 3.74199 3.99298 4.03842 4.12905 4.19084 4.41377 4.47122 4.51787 4.64254 4.71812 4.88831 4.99773 5.17892 5.19834 5.28397 5.36263 5.48658 5.56210 5.74865 5.75738 5.95935 6.14169 6.49854 6.76402 6.91108 7.32392 7.80513 8.84920 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.038631 B = 0.003466 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.638920 B = 8076.090848 C = 8394.113199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.289 3.711 4 H 0.013 0.987 5 C -0.553 4.553 6 H 0.071 0.929 7 C 0.021 3.979 8 N -0.909 5.909 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.283 1.283 13 N -0.648 5.648 14 C 0.268 3.732 15 N -0.375 5.375 16 N -0.215 5.215 17 C -0.019 4.019 18 C 0.180 3.820 19 C -0.144 4.144 20 C -0.069 4.069 21 C -0.153 4.153 22 C 0.097 3.903 23 N -0.503 5.503 24 S 0.148 5.852 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.267 0.733 31 H 0.418 0.582 32 H 0.137 0.863 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.544 9.486 12.996 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.184 3.816 4 H 0.031 0.969 5 C -0.591 4.591 6 H 0.089 0.911 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.209 1.209 13 N -0.283 5.283 14 C -0.104 4.104 15 N -0.227 5.227 16 N -0.054 5.054 17 C -0.301 4.301 18 C 0.042 3.958 19 C -0.168 4.168 20 C -0.095 4.095 21 C -0.173 4.173 22 C -0.062 4.062 23 N -0.215 5.215 24 S 0.388 5.612 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.257 0.743 32 H 0.155 0.845 33 H 0.190 0.810 34 H 0.197 0.803 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.656 9.023 12.836 20.801 hybrid contribution 0.654 -0.213 -0.904 1.136 sum -13.002 8.810 11.932 19.724 Atomic orbital electron populations 1.21651 0.96878 0.99189 1.00207 1.21824 0.93773 0.98859 1.01543 1.18645 0.93934 0.89236 0.79786 0.96890 1.21528 0.91043 1.39524 1.06993 0.91113 1.25692 1.03199 0.94180 0.94895 1.70027 1.36996 1.37897 1.09802 0.85328 0.79133 0.77883 0.78180 1.18685 1.20343 1.20938 1.44731 1.09159 1.55765 1.18673 1.26278 0.93611 0.95989 0.94526 1.71551 0.97904 1.25801 1.27468 1.71479 1.13708 1.06264 1.13932 1.27123 0.98572 1.10261 0.94117 1.18183 0.90111 0.96512 0.91023 1.22185 0.93191 0.99970 1.01410 1.21993 0.98059 0.93348 0.96064 1.22708 1.00156 0.99819 0.94635 1.23336 0.88114 0.93381 1.01338 1.67531 1.31845 1.10857 1.11250 1.84331 1.10366 1.53351 1.13109 0.93692 0.94796 0.94451 0.90348 0.94207 0.92387 0.74339 0.84459 0.80965 0.80293 0.79181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.54 71.98 0.61 -4.82 16 2 C -0.12 -5.83 5.45 30.60 0.17 -5.67 16 3 C 0.29 14.42 2.29 44.25 0.10 14.52 16 4 H 0.01 0.77 7.79 -2.38 -0.02 0.75 16 5 C -0.55 -28.67 8.73 25.60 0.22 -28.45 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 1.13 5.29 84.66 0.45 1.57 16 8 N -0.91 -50.76 11.29 21.45 0.24 -50.52 16 9 Si 0.97 41.55 29.54 68.60 2.03 43.57 16 10 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 13 N -0.65 -27.09 5.16 -333.46 -1.72 -28.81 16 14 C 0.27 10.88 6.65 179.23 1.19 12.08 16 15 N -0.38 -16.76 8.64 -59.35 -0.51 -17.27 16 16 N -0.21 -8.73 11.30 -49.55 -0.56 -9.29 16 17 C -0.02 -0.66 7.49 87.42 0.65 0.00 16 18 C 0.18 5.24 6.75 41.83 0.28 5.52 16 19 C -0.14 -3.40 9.73 22.62 0.22 -3.18 16 20 C -0.07 -1.02 10.16 22.43 0.23 -0.79 16 21 C -0.15 -1.78 10.11 22.42 0.23 -1.56 16 22 C 0.10 1.59 11.17 84.71 0.95 2.53 16 23 N -0.50 -12.94 10.15 -185.09 -1.88 -14.82 16 24 S 0.15 4.90 23.12 -56.49 -1.31 3.59 16 25 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.03 1.48 5.59 -2.39 -0.01 1.46 16 27 H 0.04 1.78 7.88 -2.38 -0.02 1.76 16 28 H 0.08 4.22 5.95 -2.39 -0.01 4.21 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.27 14.10 8.31 -92.70 -0.77 13.32 16 31 H 0.42 15.17 8.66 -92.71 -0.80 14.37 16 32 H 0.14 3.39 7.84 -2.91 -0.02 3.36 16 33 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.19 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -66.31 313.10 1.92 -64.38 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.33 Total: 17.41 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.30 Total: -8.24 kcal Atomic # 7 Polarization: -116.29 SS G_CDS: -4.43 Total: -120.71 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.31 Total: 3.59 kcal Total: -66.31 1.92 -64.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289819246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.720 kcal (2) G-P(sol) polarization free energy of solvation -66.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.71 seconds