Wall clock time and date at job start Tue Mar 31 2020 07:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 H 1.09002 * 109.47535 * 54.99901 * 3 2 1 5 5 C 1.50697 * 109.47186 * 175.00569 * 3 2 1 6 6 H 1.07994 * 120.00559 * 119.99940 * 5 3 2 7 7 C 1.37881 * 119.99912 * 299.99430 * 5 3 2 8 8 N 1.31520 * 119.99862 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00177 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47096 * 60.00466 * 9 7 5 11 11 H 1.48504 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47144 * 300.00288 * 9 7 5 13 13 N 1.46503 * 109.46846 * 294.99982 * 3 2 1 14 14 C 1.38439 * 119.99721 * 85.00149 * 13 3 2 15 15 N 1.30217 * 125.58760 * 359.95680 * 14 13 3 16 16 N 1.26261 * 117.65709 * 179.74385 * 15 14 13 17 17 C 1.30417 * 116.37114 * 0.53986 * 16 15 14 18 18 C 1.47736 * 126.14836 * 179.76643 * 17 16 15 19 19 C 1.39603 * 119.74669 * 359.67541 * 18 17 16 20 20 C 1.38306 * 119.04682 * 179.76405 * 19 18 17 21 21 C 1.38855 * 118.53729 * 0.52122 * 20 19 18 22 22 C 1.38253 * 119.40873 * 359.45500 * 21 20 19 23 23 N 1.31743 * 120.92431 * 0.30147 * 22 21 20 24 24 S 1.71289 * 125.58301 * 179.97438 * 14 13 3 25 25 H 1.08999 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46707 * 299.99906 * 1 2 3 27 27 H 1.08998 * 109.47219 * 59.99710 * 1 2 3 28 28 H 1.08996 * 109.46889 * 240.00129 * 2 1 3 29 29 H 1.08998 * 109.47429 * 119.99779 * 2 1 3 30 30 H 0.96996 * 120.00231 * 179.97438 * 8 7 5 31 31 H 0.96993 * 120.00310 * 265.00236 * 13 3 2 32 32 H 1.07994 * 120.47699 * 0.02562 * 19 18 17 33 33 H 1.08000 * 120.73512 * 180.27704 * 20 19 18 34 34 H 1.08002 * 120.29822 * 179.73520 * 21 20 19 35 35 H 1.08006 * 119.53660 * 180.27942 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8785 1.2278 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8813 1.3816 10 1 6.4995 2.2816 1.3819 11 1 6.3980 0.2168 2.6502 12 1 6.5975 0.1474 0.2347 13 7 1.6524 2.0974 -1.2519 14 6 0.4020 2.6797 -1.3701 15 7 -0.5114 2.7083 -0.4424 16 7 -1.6013 3.2863 -0.7108 17 6 -1.7088 3.7934 -1.9075 18 6 -2.8832 4.5077 -2.4490 19 6 -4.0165 4.6811 -1.6524 20 6 -5.1058 5.3562 -2.1723 21 6 -5.0334 5.8279 -3.4763 22 6 -3.8797 5.6217 -4.2097 23 7 -2.8530 4.9798 -3.6905 24 16 -0.1972 3.4803 -2.7608 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8294 -0.0617 2.9494 31 1 2.2718 2.1231 -1.9978 32 1 -4.0406 4.2972 -0.6433 33 1 -5.9948 5.5097 -1.5786 34 1 -5.8691 6.3552 -3.9122 35 1 -3.8194 5.9917 -5.2226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289819251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:35 Heat of formation + Delta-G solvation = 100.539067 kcal Electronic energy + Delta-G solvation = -19761.970533 eV Core-core repulsion = 16694.272369 eV Total energy + Delta-G solvation = -3067.698164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 7.67 seconds Orbital eigenvalues (eV) -40.60835 -39.90208 -36.72576 -33.28443 -32.66891 -32.14640 -31.09004 -29.07207 -27.19477 -25.37774 -23.66277 -23.34253 -22.82940 -20.75959 -19.18139 -18.91890 -17.21600 -16.95563 -16.07382 -15.98959 -15.47441 -15.23603 -14.98844 -14.12410 -14.05255 -13.72751 -13.21107 -12.93494 -12.79230 -12.67640 -11.97918 -11.82849 -11.36339 -11.16633 -11.01382 -10.72481 -10.36715 -10.25180 -10.19483 -9.97621 -9.77761 -9.57429 -9.52724 -9.41927 -9.15452 -8.79046 -8.54176 -7.22030 -6.24438 -4.35634 0.44831 1.16066 1.16775 1.62957 1.82684 3.19339 3.20005 3.25293 3.26189 3.67515 3.85754 4.01712 4.27151 4.68988 4.71482 4.92731 5.02308 5.07327 5.30981 5.43353 5.64282 5.81231 5.97781 6.09875 6.28648 6.34336 6.51710 6.53984 6.87237 6.96275 7.19741 7.27087 7.51123 7.59854 7.75440 7.80727 8.01379 8.21111 8.66994 9.24078 9.31731 10.80630 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.038643 B = 0.003466 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.412446 B = 8076.340740 C = 8394.215157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.275 3.725 4 H 0.058 0.942 5 C -0.542 4.542 6 H 0.063 0.937 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.905 3.095 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.641 5.641 14 C 0.292 3.708 15 N -0.341 5.341 16 N -0.179 5.179 17 C -0.036 4.036 18 C 0.225 3.775 19 C -0.137 4.137 20 C -0.073 4.073 21 C -0.180 4.180 22 C 0.106 3.894 23 N -0.480 5.480 24 S 0.090 5.910 25 H 0.026 0.974 26 H 0.056 0.944 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.105 0.895 30 H 0.268 0.732 31 H 0.408 0.592 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.837 7.819 -10.507 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.076 0.924 5 C -0.581 4.581 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.732 3.268 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.272 5.272 14 C -0.080 4.080 15 N -0.195 5.195 16 N -0.021 5.021 17 C -0.317 4.317 18 C 0.086 3.914 19 C -0.161 4.161 20 C -0.099 4.099 21 C -0.201 4.201 22 C -0.052 4.052 23 N -0.191 5.191 24 S 0.329 5.671 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.245 0.755 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.921 7.350 -10.325 17.399 hybrid contribution 0.465 0.077 0.302 0.560 sum -11.456 7.427 -10.022 16.936 Atomic orbital electron populations 1.21837 0.98095 0.98469 1.01150 1.21987 0.92807 0.99270 1.02699 1.19149 0.94747 0.89411 0.79441 0.92410 1.21110 0.90112 1.40036 1.06798 0.91918 1.24857 0.98880 0.94461 0.95159 1.69869 1.35447 1.36916 1.09277 0.86453 0.84342 0.78442 0.77590 1.20071 1.20975 1.20063 1.45232 1.08308 1.54275 1.19413 1.26239 0.93849 0.94795 0.93099 1.71613 0.97256 1.24681 1.25960 1.71502 1.13920 1.04085 1.12579 1.26351 0.97576 1.13160 0.94579 1.18206 0.89961 0.93707 0.89549 1.22087 0.92729 0.99432 1.01814 1.21547 0.98214 0.94877 0.95223 1.22180 0.99879 1.02410 0.95588 1.22645 0.88388 0.94349 0.99849 1.67611 1.29868 1.09968 1.11688 1.84636 1.11446 1.55259 1.15755 0.95450 0.92442 0.94956 0.94819 0.87722 0.92230 0.75546 0.83610 0.84452 0.84739 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.54 37.16 0.32 -2.66 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.13 16 3 C 0.28 6.58 2.29 -69.08 -0.16 6.42 16 4 H 0.06 1.58 7.79 -51.93 -0.40 1.18 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -23.69 11.29 55.43 0.63 -23.06 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.64 -12.95 5.16 -56.76 -0.29 -13.25 16 14 C 0.29 5.75 6.65 -87.41 -0.58 5.17 16 15 N -0.34 -7.27 8.63 29.89 0.26 -7.02 16 16 N -0.18 -3.51 11.30 32.99 0.37 -3.14 16 17 C -0.04 -0.63 7.49 -14.27 -0.11 -0.74 16 18 C 0.23 3.38 6.75 -83.03 -0.56 2.82 16 19 C -0.14 -1.71 9.73 -39.05 -0.38 -2.09 16 20 C -0.07 -0.67 10.16 -39.33 -0.40 -1.07 16 21 C -0.18 -1.51 10.11 -39.35 -0.40 -1.91 16 22 C 0.11 1.08 11.17 -17.58 -0.20 0.88 16 23 N -0.48 -6.67 10.15 -9.86 -0.10 -6.77 16 24 S 0.09 1.49 23.12 -107.50 -2.49 -0.99 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.31 7.88 -51.92 -0.41 0.90 16 27 H 0.03 0.68 5.59 -51.93 -0.29 0.39 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.41 7.26 8.66 -40.82 -0.35 6.90 16 32 H 0.15 1.79 7.84 -52.49 -0.41 1.38 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -28.90 313.09 -8.76 -37.66 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.83 Total: 5.46 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -3.00 Total: -8.61 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.86 Total: -53.24 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.49 Total: -0.99 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.90 -8.76 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289819251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.196 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.67 seconds