Wall clock time and date at job start Tue Mar 31 2020 08:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00105 * 2 1 4 4 H 1.48495 * 109.46941 * 270.00378 * 3 2 1 5 5 H 1.48502 * 109.46744 * 30.00095 * 3 2 1 6 6 H 1.48496 * 109.47147 * 149.99764 * 3 2 1 7 7 C 1.37878 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99830 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99640 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46716 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46922 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00255 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99487 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00704 * 180.02562 * 12 11 10 15 15 C 1.39975 * 120.00435 * 184.45960 * 14 12 11 16 16 C 1.39145 * 120.09595 * 325.35755 * 15 14 12 17 17 C 1.38226 * 120.13757 * 180.02562 * 16 15 14 18 18 C 1.38028 * 120.40507 * 359.95531 * 17 16 15 19 19 C 1.39607 * 119.94557 * 0.02562 * 18 17 16 20 20 C 1.38134 * 120.10111 * 145.33989 * 15 14 12 21 21 C 1.50790 * 133.38786 * 359.97438 * 20 15 14 22 22 O 1.45402 * 106.45327 * 179.97438 * 21 20 15 23 23 C 1.34464 * 108.93521 * 0.05079 * 22 21 20 24 24 O 1.21462 * 124.87870 * 179.97438 * 23 22 21 25 25 H 0.97001 * 119.99964 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46980 * 60.00738 * 9 7 2 27 27 H 1.08997 * 109.47188 * 299.99798 * 9 7 2 28 28 H 1.08999 * 109.47315 * 60.00312 * 10 9 7 29 29 H 1.08997 * 109.47021 * 299.99770 * 10 9 7 30 30 H 0.97003 * 120.00637 * 0.02562 * 11 10 9 31 31 H 0.97008 * 119.99538 * 4.45538 * 14 12 11 32 32 H 1.07994 * 119.92653 * 0.02562 * 16 15 14 33 33 H 1.07991 * 119.79820 * 179.97438 * 17 16 15 34 34 H 1.08005 * 120.02346 * 180.02562 * 18 17 16 35 35 H 1.08997 * 110.06707 * 299.23657 * 21 20 15 36 36 H 1.09000 * 110.06769 * 60.71581 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4865 -2.6365 -0.0011 12 6 6.1604 -3.8037 -0.0007 13 8 5.5525 -4.8567 0.0002 14 7 7.5082 -3.8038 -0.0013 15 6 8.2080 -5.0124 -0.0951 16 6 7.6994 -6.1614 0.5026 17 6 8.3901 -7.3552 0.4109 18 6 9.5872 -7.4190 -0.2733 19 6 10.1066 -6.2725 -0.8772 20 6 9.4054 -5.0681 -0.7816 21 6 10.2204 -4.0419 -1.5275 22 8 11.3942 -4.7359 -2.0323 23 6 11.3323 -6.0262 -1.6590 24 8 12.1663 -6.8676 -1.9271 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6808 -0.8905 28 1 3.6579 -3.1506 -0.8897 29 1 3.6586 -3.1502 0.8903 30 1 5.9716 -1.7965 -0.0014 31 1 7.9932 -2.9662 0.0633 32 1 6.7631 -6.1203 1.0392 33 1 7.9905 -8.2435 0.8772 34 1 10.1215 -8.3551 -0.3414 35 1 9.6413 -3.6349 -2.3564 36 1 10.5212 -3.2405 -0.8526 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289952738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:23 Heat of formation + Delta-G solvation = -72.036794 kcal Electronic energy + Delta-G solvation = -21725.930266 eV Core-core repulsion = 18175.703029 eV Total energy + Delta-G solvation = -3550.227237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.98079 -40.45598 -38.48590 -37.62666 -35.47545 -34.84653 -32.94013 -32.22765 -30.79944 -29.51422 -27.53152 -25.30575 -24.37966 -22.64596 -21.76979 -20.96534 -20.46227 -18.67342 -18.27201 -17.35446 -17.12514 -16.97690 -16.29521 -16.02279 -15.71075 -14.91507 -14.84916 -14.29402 -14.20572 -14.11669 -13.95880 -13.70377 -13.60427 -13.10994 -12.69730 -12.46287 -11.95029 -11.60705 -11.37594 -11.31733 -10.81360 -10.72178 -10.51445 -10.39359 -10.11049 -9.94823 -9.43573 -9.35175 -8.91825 -8.69677 -8.43186 -6.19033 -4.20066 0.23493 0.78600 2.14035 2.44451 2.67507 3.02984 3.18291 3.25280 3.27236 3.29410 3.40845 3.72192 4.10838 4.29648 4.44792 4.66195 4.70657 4.85246 4.98943 5.04655 5.13623 5.22554 5.61370 5.72779 5.89031 5.97726 6.06176 6.07331 6.23271 6.42172 6.51293 6.54234 6.68448 7.04698 7.09294 7.10823 7.56484 7.87880 8.34560 8.46859 8.84943 9.40414 10.93884 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.002858 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.767654 B = 9794.251306 C =10504.485464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.146 3.854 11 N -0.732 5.732 12 C 0.699 3.301 13 O -0.574 6.574 14 N -0.693 5.693 15 C 0.200 3.800 16 C -0.079 4.079 17 C -0.106 4.106 18 C -0.054 4.054 19 C -0.177 4.177 20 C -0.143 4.143 21 C 0.098 3.902 22 O -0.318 6.318 23 C 0.525 3.475 24 O -0.454 6.454 25 H 0.266 0.734 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.395 0.605 31 H 0.407 0.593 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.971 -7.864 0.856 22.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.024 3.976 11 N -0.385 5.385 12 C 0.399 3.601 13 O -0.451 6.451 14 N -0.341 5.341 15 C 0.104 3.896 16 C -0.099 4.099 17 C -0.124 4.124 18 C -0.073 4.073 19 C -0.180 4.180 20 C -0.147 4.147 21 C 0.024 3.976 22 O -0.234 6.234 23 C 0.367 3.633 24 O -0.339 6.339 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.243 0.757 32 H 0.176 0.824 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.135 0.865 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 20.673 -8.897 0.588 22.514 hybrid contribution 0.601 1.840 0.048 1.936 sum 21.274 -7.057 0.637 22.423 Atomic orbital electron populations 1.69896 1.06307 1.27159 1.50079 1.25002 0.94768 0.99164 0.94301 0.86747 0.80206 0.83553 0.78506 1.20208 1.21230 1.19136 1.20880 0.88487 0.94964 1.52029 0.90540 1.19803 0.98092 0.91117 0.96902 1.21508 0.73894 1.00326 1.01906 1.45590 1.09343 1.05969 1.77565 1.15999 0.80513 0.85384 0.78173 1.90921 1.67129 1.30156 1.56876 1.42720 1.05779 1.07817 1.77812 1.16529 0.89931 0.86976 0.96152 1.21775 1.00568 0.90994 0.96568 1.21159 0.94068 0.98316 0.98903 1.20852 0.95018 0.96964 0.94434 1.20527 0.97440 0.95327 1.04691 1.20425 0.97199 0.96553 1.00477 1.22297 0.83287 0.93086 0.98966 1.87277 1.43227 1.22599 1.70272 1.20518 0.84731 0.81232 0.76796 1.90883 1.43927 1.44639 1.54459 0.92450 0.95941 0.96390 0.91744 0.91701 0.77181 0.75743 0.82392 0.84090 0.84569 0.86536 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.96 55.43 0.77 -25.69 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 20.10 27.47 -169.99 -4.67 15.43 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -5.66 6.54 56.52 0.37 -5.29 16 7 C -0.53 -14.00 9.66 -34.44 -0.33 -14.33 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.02 -0.45 4.16 -27.88 -0.12 -0.56 16 10 C 0.15 2.67 5.61 -4.04 -0.02 2.65 16 11 N -0.73 -10.14 5.56 -65.23 -0.36 -10.50 16 12 C 0.70 9.65 8.41 -86.92 -0.73 8.92 16 13 O -0.57 -10.04 13.75 5.29 0.07 -9.97 16 14 N -0.69 -6.62 5.34 -14.32 -0.08 -6.70 16 15 C 0.20 2.03 6.29 -83.84 -0.53 1.50 16 16 C -0.08 -0.84 8.71 -39.25 -0.34 -1.18 16 17 C -0.11 -0.92 10.01 -39.66 -0.40 -1.32 16 18 C -0.05 -0.49 10.10 -39.15 -0.40 -0.88 16 19 C -0.18 -1.81 6.27 -105.09 -0.66 -2.47 16 20 C -0.14 -1.28 6.30 -104.07 -0.66 -1.94 16 21 C 0.10 0.66 7.92 36.05 0.29 0.94 16 22 O -0.32 -3.25 11.14 -39.51 -0.44 -3.69 16 23 C 0.53 6.19 8.59 34.49 0.30 6.49 16 24 O -0.45 -6.65 18.04 -18.91 -0.34 -6.99 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 27 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.39 4.25 8.49 -40.82 -0.35 3.91 16 31 H 0.41 2.41 8.84 -40.82 -0.36 2.05 16 32 H 0.16 1.93 6.19 -52.49 -0.33 1.61 16 33 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -33.71 316.78 -7.89 -41.60 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.92 Total: 2.09 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -3.69 Total: -0.37 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.33 Total: -42.88 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.71 Total: -20.64 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.71 -7.89 -41.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289952738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.438 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds