Wall clock time and date at job start Tue Mar 31 2020 08:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00105 * 2 1 4 4 H 1.48495 * 109.46941 * 270.00378 * 3 2 1 5 5 H 1.48502 * 109.46744 * 30.00095 * 3 2 1 6 6 H 1.48496 * 109.47147 * 149.99764 * 3 2 1 7 7 C 1.37878 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99830 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99640 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46716 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46922 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00255 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99487 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00704 * 180.02562 * 12 11 10 15 15 C 1.39975 * 120.00435 * 184.45960 * 14 12 11 16 16 C 1.39145 * 120.09595 * 325.35755 * 15 14 12 17 17 C 1.38226 * 120.13757 * 180.02562 * 16 15 14 18 18 C 1.38028 * 120.40507 * 359.95531 * 17 16 15 19 19 C 1.39607 * 119.94557 * 0.02562 * 18 17 16 20 20 C 1.38134 * 120.10111 * 145.33989 * 15 14 12 21 21 C 1.50790 * 133.38786 * 359.97438 * 20 15 14 22 22 O 1.45402 * 106.45327 * 179.97438 * 21 20 15 23 23 C 1.34464 * 108.93521 * 0.05079 * 22 21 20 24 24 O 1.21462 * 124.87870 * 179.97438 * 23 22 21 25 25 H 0.97001 * 119.99964 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46980 * 60.00738 * 9 7 2 27 27 H 1.08997 * 109.47188 * 299.99798 * 9 7 2 28 28 H 1.08999 * 109.47315 * 60.00312 * 10 9 7 29 29 H 1.08997 * 109.47021 * 299.99770 * 10 9 7 30 30 H 0.97003 * 120.00637 * 0.02562 * 11 10 9 31 31 H 0.97008 * 119.99538 * 4.45538 * 14 12 11 32 32 H 1.07994 * 119.92653 * 0.02562 * 16 15 14 33 33 H 1.07991 * 119.79820 * 179.97438 * 17 16 15 34 34 H 1.08005 * 120.02346 * 180.02562 * 18 17 16 35 35 H 1.08997 * 110.06707 * 299.23657 * 21 20 15 36 36 H 1.09000 * 110.06769 * 60.71581 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4865 -2.6365 -0.0011 12 6 6.1604 -3.8037 -0.0007 13 8 5.5525 -4.8567 0.0002 14 7 7.5082 -3.8038 -0.0013 15 6 8.2080 -5.0124 -0.0951 16 6 7.6994 -6.1614 0.5026 17 6 8.3901 -7.3552 0.4109 18 6 9.5872 -7.4190 -0.2733 19 6 10.1066 -6.2725 -0.8772 20 6 9.4054 -5.0681 -0.7816 21 6 10.2204 -4.0419 -1.5275 22 8 11.3942 -4.7359 -2.0323 23 6 11.3323 -6.0262 -1.6590 24 8 12.1663 -6.8676 -1.9271 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6808 -0.8905 28 1 3.6579 -3.1506 -0.8897 29 1 3.6586 -3.1502 0.8903 30 1 5.9716 -1.7965 -0.0014 31 1 7.9932 -2.9662 0.0633 32 1 6.7631 -6.1203 1.0392 33 1 7.9905 -8.2435 0.8772 34 1 10.1215 -8.3551 -0.3414 35 1 9.6413 -3.6349 -2.3564 36 1 10.5212 -3.2405 -0.8526 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289952738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:20 Heat of formation + Delta-G solvation = -96.005381 kcal Electronic energy + Delta-G solvation = -21726.969622 eV Core-core repulsion = 18175.703029 eV Total energy + Delta-G solvation = -3551.266593 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.76202 -41.46946 -39.39897 -38.49839 -36.78459 -35.88984 -34.79841 -32.96344 -32.25519 -30.60529 -28.22838 -26.82910 -25.37449 -23.41414 -22.96363 -22.44376 -21.37875 -19.74907 -19.11695 -18.86421 -18.24000 -17.87650 -17.16710 -16.86460 -16.80153 -16.30599 -15.87867 -15.79159 -15.38940 -15.14495 -14.80409 -14.77284 -14.56517 -14.42636 -13.95434 -13.33326 -13.27723 -13.04584 -12.63363 -12.17232 -12.15598 -12.03384 -11.74716 -11.67540 -11.64452 -11.48236 -11.18855 -10.76836 -10.16581 -10.08651 -9.26751 -8.27755 -6.35115 -0.55329 0.05143 1.28070 1.41595 1.44200 1.46589 1.55091 1.96037 1.99510 2.38947 2.54923 2.63663 3.01044 3.07913 3.14254 3.81013 4.03124 4.17319 4.22717 4.25142 4.37054 4.39520 4.47711 4.55531 4.78524 4.88772 5.03765 5.10799 5.21562 5.31033 5.43588 5.45008 5.47872 5.65993 5.74932 5.87339 6.23147 6.24661 6.72984 6.95333 7.29522 7.41601 8.89002 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.002858 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.767654 B = 9794.251306 C =10504.485464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.232 1.232 7 C -0.538 4.538 8 H 0.029 0.971 9 C -0.013 4.013 10 C 0.163 3.837 11 N -0.721 5.721 12 C 0.701 3.299 13 O -0.614 6.614 14 N -0.670 5.670 15 C 0.186 3.814 16 C -0.092 4.092 17 C -0.103 4.103 18 C -0.051 4.051 19 C -0.195 4.195 20 C -0.125 4.125 21 C 0.094 3.906 22 O -0.326 6.326 23 C 0.526 3.474 24 O -0.494 6.494 25 H 0.267 0.733 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.414 0.586 31 H 0.428 0.572 32 H 0.140 0.860 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.679 -6.066 0.914 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.155 1.155 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.051 4.051 10 C 0.039 3.961 11 N -0.376 5.376 12 C 0.401 3.599 13 O -0.494 6.494 14 N -0.320 5.320 15 C 0.090 3.910 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.070 4.070 19 C -0.198 4.198 20 C -0.129 4.129 21 C 0.021 3.979 22 O -0.241 6.241 23 C 0.371 3.629 24 O -0.383 6.383 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.251 0.749 31 H 0.267 0.733 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 23.455 -7.068 0.651 24.505 hybrid contribution -0.290 1.171 0.038 1.207 sum 23.165 -5.897 0.689 23.914 Atomic orbital electron populations 1.70081 1.08696 1.28387 1.52097 1.26100 0.95652 1.03952 0.93775 0.85538 0.79791 0.77263 0.79239 1.19133 1.21725 1.15482 1.21269 0.91734 0.93309 1.51359 0.95250 1.19656 0.94184 0.92959 0.98266 1.20944 0.76573 0.98333 1.00232 1.45107 1.07496 1.07146 1.77808 1.16038 0.81663 0.84480 0.77711 1.90912 1.68443 1.31597 1.58447 1.42317 1.04101 1.08804 1.76758 1.16518 0.90445 0.86896 0.97149 1.21791 1.00252 0.92225 0.97013 1.21352 0.93667 0.98520 0.98547 1.21092 0.94923 0.97388 0.93554 1.20579 0.97325 0.96387 1.05493 1.20482 0.96277 0.96863 0.99268 1.22753 0.82216 0.92686 1.00250 1.87256 1.44691 1.21956 1.70206 1.20690 0.84554 0.81410 0.76291 1.90855 1.45318 1.45902 1.56193 0.92423 0.94239 0.94466 0.93704 0.93492 0.74879 0.73271 0.84212 0.81874 0.83185 0.84316 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.86 13.96 21.45 0.30 -57.56 16 2 C 0.00 0.12 5.47 84.66 0.46 0.58 16 3 Si 0.96 40.12 27.47 68.60 1.88 42.00 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.23 -8.35 6.54 99.48 0.65 -7.70 16 7 C -0.54 -29.15 9.66 25.60 0.25 -28.90 16 8 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 9 C -0.01 -0.51 4.16 29.85 0.12 -0.39 16 10 C 0.16 5.88 5.61 86.38 0.48 6.37 16 11 N -0.72 -18.23 5.56 -478.53 -2.66 -20.89 16 12 C 0.70 18.10 8.41 179.06 1.51 19.60 16 13 O -0.61 -21.34 13.75 -4.00 -0.06 -21.39 16 14 N -0.67 -10.86 5.34 -317.50 -1.70 -12.56 16 15 C 0.19 3.34 6.29 38.03 0.24 3.58 16 16 C -0.09 -1.88 8.71 22.48 0.20 -1.68 16 17 C -0.10 -1.65 10.01 22.22 0.22 -1.42 16 18 C -0.05 -0.84 10.10 22.55 0.23 -0.61 16 19 C -0.20 -3.67 6.27 -20.17 -0.13 -3.79 16 20 C -0.13 -1.91 6.30 -19.51 -0.12 -2.04 16 21 C 0.09 0.91 7.92 71.26 0.56 1.47 16 22 O -0.33 -5.90 11.14 -54.07 -0.60 -6.51 16 23 C 0.53 11.80 8.59 70.25 0.60 12.41 16 24 O -0.49 -14.40 18.04 19.64 0.35 -14.05 16 25 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 26 H 0.04 1.48 7.20 -2.39 -0.02 1.46 16 27 H 0.04 1.38 7.57 -2.39 -0.02 1.36 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.41 7.24 8.49 -92.71 -0.79 6.45 16 31 H 0.43 3.25 8.84 -92.70 -0.82 2.43 16 32 H 0.14 3.43 6.19 -2.91 -0.02 3.41 16 33 H 0.16 1.78 8.06 -2.92 -0.02 1.76 16 34 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -77.01 316.78 1.64 -75.37 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -0.51 Total: 10.42 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 4.63 Total: 5.17 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -4.06 Total: -91.01 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.30 Total: -41.95 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.88 Total: 42.00 kcal Total: -77.01 1.64 -75.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289952738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.638 kcal (2) G-P(sol) polarization free energy of solvation -77.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds