Wall clock time and date at job start Tue Mar 31 2020 07:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50697 * 119.99919 * 2 1 4 4 N 1.46898 * 109.47200 * 123.43560 * 3 2 1 5 5 C 1.46910 * 111.00057 * 199.23804 * 4 3 2 6 6 C 1.50689 * 109.47233 * 66.04210 * 5 4 3 7 7 H 1.08010 * 120.00345 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00109 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00125 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00199 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47123 * 89.99663 * 10 8 6 12 12 H 1.48502 * 109.47212 * 210.00135 * 10 8 6 13 13 H 1.48499 * 109.46813 * 329.99509 * 10 8 6 14 14 C 1.46899 * 111.00597 * 75.28333 * 4 3 2 15 15 C 1.50700 * 109.47716 * 194.46298 * 14 4 3 16 16 C 1.37977 * 120.06104 * 255.18573 * 15 14 4 17 17 C 1.38322 * 120.16268 * 179.76757 * 16 15 14 18 18 C 1.38490 * 120.29262 * 0.50563 * 17 16 15 19 19 Cl 1.73601 * 119.93893 * 179.77035 * 18 17 16 20 20 C 1.38049 * 120.12751 * 359.74781 * 18 17 16 21 21 C 1.39617 * 120.06251 * 75.45570 * 15 14 4 22 22 C 1.43195 * 120.14326 * 0.02562 * 21 15 14 23 23 N 3.39026 * 104.17871 * 124.29359 * 2 1 3 24 24 H 1.07998 * 120.00384 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99583 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.00173 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47396 * 3.43469 * 3 2 1 28 28 H 1.08999 * 109.47299 * 243.43021 * 3 2 1 29 29 H 1.08996 * 109.46723 * 186.04557 * 5 4 3 30 30 H 1.09001 * 109.46694 * 306.04024 * 5 4 3 31 31 H 0.96994 * 120.00443 * 179.97438 * 9 8 6 32 32 H 1.09008 * 109.46578 * 314.46183 * 14 4 3 33 33 H 1.09002 * 109.47405 * 74.45269 * 14 4 3 34 34 H 1.08003 * 119.91739 * 0.02562 * 16 15 14 35 35 H 1.07999 * 119.84733 * 180.23079 * 17 16 15 36 36 H 1.07994 * 120.08753 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9691 1.3476 1.1558 5 6 3.3716 2.7276 1.4588 6 6 2.1694 3.5125 1.9163 7 1 1.2029 3.0341 1.9764 8 6 2.3030 4.8416 2.2581 9 7 3.4798 5.4241 2.1854 10 14 0.8128 5.8144 2.8260 11 1 0.6828 5.7047 4.3012 12 1 0.9796 7.2409 2.4484 13 1 -0.4087 5.2709 2.1796 14 6 4.1436 0.4930 0.9361 15 6 4.8592 0.2765 2.2446 16 6 6.0400 0.9413 2.5048 17 6 6.6961 0.7479 3.7070 18 6 6.1790 -0.1214 4.6531 19 17 7.0132 -0.3618 6.1564 20 6 5.0012 -0.7967 4.4032 21 6 4.3317 -0.6014 3.1934 22 6 3.1100 -1.2991 2.9267 23 7 2.1404 -1.8520 2.7156 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3568 2.1326 0.0616 28 1 2.6432 1.3899 -0.9191 29 1 4.1235 2.7218 2.2478 30 1 3.7879 3.1895 0.5635 31 1 3.5738 6.3592 2.4255 32 1 3.8233 -0.4682 0.5338 33 1 4.8176 0.9764 0.2289 34 1 6.4507 1.6176 1.7697 35 1 7.6180 1.2737 3.9069 36 1 4.5984 -1.4740 5.1416 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292270834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:13 Heat of formation + Delta-G solvation = 71.661355 kcal Electronic energy + Delta-G solvation = -20250.194668 eV Core-core repulsion = 17146.907815 eV Total energy + Delta-G solvation = -3103.286853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74992 -37.19954 -36.46891 -35.92948 -33.26977 -32.66618 -31.34397 -30.94768 -27.47138 -26.11103 -24.03014 -23.78149 -21.82285 -20.56626 -19.23494 -18.56414 -16.53613 -16.11542 -15.85173 -15.33644 -14.79767 -14.58057 -14.33999 -13.80179 -13.68909 -13.50184 -13.00597 -12.84071 -12.64723 -12.46874 -12.32558 -12.03432 -11.67891 -11.45629 -11.32358 -11.20117 -10.95280 -10.90267 -10.78158 -10.66490 -10.26834 -9.95097 -9.29402 -8.96457 -8.89729 -8.55155 -8.46793 -7.38897 -6.07585 -4.07960 0.81559 1.18018 2.04866 2.76505 3.02255 3.10871 3.30052 3.36399 3.40031 3.90406 4.15521 4.40164 4.74014 4.81327 4.97532 5.11636 5.28501 5.32632 5.46854 5.50910 5.61828 5.71287 5.83667 5.87194 6.03250 6.08444 6.20267 6.29641 6.45940 6.53137 6.66889 7.07403 7.16074 7.23000 7.30040 7.73420 7.81078 7.97396 8.09192 8.44822 8.99115 9.56338 11.03142 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.005926 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.472973 B = 4723.750990 C = 6185.886151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C 0.085 3.915 4 N -0.525 5.525 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.079 3.921 15 C -0.007 4.007 16 C -0.094 4.094 17 C -0.080 4.080 18 C -0.043 4.043 19 Cl -0.071 7.071 20 C -0.069 4.069 21 C 0.003 3.997 22 C 0.267 3.733 23 N -0.411 5.411 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.031 0.969 29 H 0.037 0.963 30 H -0.007 1.007 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.546 -10.982 0.837 13.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.151 4.151 3 C -0.043 4.043 4 N -0.250 5.250 5 C 0.066 3.934 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.143 4.143 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.049 4.049 15 C -0.010 4.010 16 C -0.113 4.113 17 C -0.100 4.100 18 C -0.069 4.069 19 Cl -0.042 7.042 20 C -0.090 4.090 21 C -0.001 4.001 22 C -0.049 4.049 23 N -0.086 5.086 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.010 0.990 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.946 -11.848 1.068 13.299 hybrid contribution 0.124 1.269 0.031 1.275 sum 6.070 -10.580 1.099 12.247 Atomic orbital electron populations 1.23674 0.95988 1.01115 1.02423 1.22899 0.95951 0.98092 0.98172 1.21193 0.96138 0.95778 0.91151 1.62196 1.12861 1.13447 1.36471 1.19824 0.97008 0.80949 0.95583 1.21119 0.95031 0.94394 1.44048 0.91931 1.24932 0.95946 0.97676 0.95731 1.69933 1.22598 1.12196 1.48883 0.86553 0.83046 0.79045 0.79130 1.20634 1.21301 1.19885 1.21163 0.93199 0.98814 0.91762 1.20025 0.93294 0.92121 0.95548 1.21030 0.94487 0.98667 0.97109 1.21205 1.00309 0.96071 0.92396 1.20581 0.95602 1.01596 0.89169 1.98365 1.77704 1.96177 1.31968 1.20907 0.93250 0.99065 0.95804 1.15612 0.90228 0.99044 0.95177 1.25212 0.92730 0.93045 0.93904 1.81145 1.09733 1.10516 1.07188 0.88645 0.89353 0.88802 0.88707 0.95133 0.94453 0.98967 0.92926 0.90816 0.93604 0.84034 0.84379 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 14.32 29.02 0.42 -2.73 16 2 C -0.13 -2.25 9.33 -36.03 -0.34 -2.59 16 3 C 0.08 1.59 5.26 -4.98 -0.03 1.57 16 4 N -0.53 -10.50 4.29 -238.97 -1.02 -11.52 16 5 C 0.19 4.58 4.57 -4.98 -0.02 4.56 16 6 C -0.51 -13.68 8.24 -34.45 -0.28 -13.96 16 7 H 0.06 1.72 7.31 -52.48 -0.38 1.33 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -25.49 13.29 55.43 0.74 -24.75 16 10 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.08 1.27 4.29 -4.98 -0.02 1.25 16 15 C -0.01 -0.10 4.67 -104.20 -0.49 -0.58 16 16 C -0.09 -1.26 8.85 -39.65 -0.35 -1.61 16 17 C -0.08 -0.97 9.82 -39.46 -0.39 -1.36 16 18 C -0.04 -0.52 6.31 -39.56 -0.25 -0.77 16 19 Cl -0.07 -0.79 28.95 -51.86 -1.50 -2.29 16 20 C -0.07 -0.88 9.54 -39.13 -0.37 -1.26 16 21 C 0.00 0.05 5.73 -106.94 -0.61 -0.56 16 22 C 0.27 4.35 14.01 -22.48 -0.31 4.04 16 23 N -0.41 -7.28 18.54 41.84 0.78 -6.50 16 24 H 0.10 1.55 7.84 -52.49 -0.41 1.14 16 25 H 0.09 1.29 8.06 -52.48 -0.42 0.87 16 26 H 0.09 1.54 7.26 -52.48 -0.38 1.16 16 27 H 0.09 1.99 6.22 -51.93 -0.32 1.67 16 28 H 0.03 0.54 8.01 -51.93 -0.42 0.12 16 29 H 0.04 0.94 6.57 -51.93 -0.34 0.60 16 30 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.07 1.11 6.36 -51.92 -0.33 0.78 16 33 H 0.05 0.70 7.88 -51.93 -0.41 0.29 16 34 H 0.14 1.75 8.00 -52.48 -0.42 1.33 16 35 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -29.09 332.36 -8.41 -37.51 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.24 Total: -1.30 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -3.15 Total: -12.50 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.49 Total: -42.78 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.09 -8.41 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292270834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.168 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds