Wall clock time and date at job start Tue Mar 31 2020 07:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50697 * 119.99919 * 2 1 4 4 N 1.46898 * 109.47200 * 123.43560 * 3 2 1 5 5 C 1.46910 * 111.00057 * 199.23804 * 4 3 2 6 6 C 1.50689 * 109.47233 * 66.04210 * 5 4 3 7 7 H 1.08010 * 120.00345 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00109 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00125 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00199 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47123 * 89.99663 * 10 8 6 12 12 H 1.48502 * 109.47212 * 210.00135 * 10 8 6 13 13 H 1.48499 * 109.46813 * 329.99509 * 10 8 6 14 14 C 1.46899 * 111.00597 * 75.28333 * 4 3 2 15 15 C 1.50700 * 109.47716 * 194.46298 * 14 4 3 16 16 C 1.37977 * 120.06104 * 255.18573 * 15 14 4 17 17 C 1.38322 * 120.16268 * 179.76757 * 16 15 14 18 18 C 1.38490 * 120.29262 * 0.50563 * 17 16 15 19 19 Cl 1.73601 * 119.93893 * 179.77035 * 18 17 16 20 20 C 1.38049 * 120.12751 * 359.74781 * 18 17 16 21 21 C 1.39617 * 120.06251 * 75.45570 * 15 14 4 22 22 C 1.43195 * 120.14326 * 0.02562 * 21 15 14 23 23 N 3.39026 * 104.17871 * 124.29359 * 2 1 3 24 24 H 1.07998 * 120.00384 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99583 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.00173 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47396 * 3.43469 * 3 2 1 28 28 H 1.08999 * 109.47299 * 243.43021 * 3 2 1 29 29 H 1.08996 * 109.46723 * 186.04557 * 5 4 3 30 30 H 1.09001 * 109.46694 * 306.04024 * 5 4 3 31 31 H 0.96994 * 120.00443 * 179.97438 * 9 8 6 32 32 H 1.09008 * 109.46578 * 314.46183 * 14 4 3 33 33 H 1.09002 * 109.47405 * 74.45269 * 14 4 3 34 34 H 1.08003 * 119.91739 * 0.02562 * 16 15 14 35 35 H 1.07999 * 119.84733 * 180.23079 * 17 16 15 36 36 H 1.07994 * 120.08753 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9691 1.3476 1.1558 5 6 3.3716 2.7276 1.4588 6 6 2.1694 3.5125 1.9163 7 1 1.2029 3.0341 1.9764 8 6 2.3030 4.8416 2.2581 9 7 3.4798 5.4241 2.1854 10 14 0.8128 5.8144 2.8260 11 1 0.6828 5.7047 4.3012 12 1 0.9796 7.2409 2.4484 13 1 -0.4087 5.2709 2.1796 14 6 4.1436 0.4930 0.9361 15 6 4.8592 0.2765 2.2446 16 6 6.0400 0.9413 2.5048 17 6 6.6961 0.7479 3.7070 18 6 6.1790 -0.1214 4.6531 19 17 7.0132 -0.3618 6.1564 20 6 5.0012 -0.7967 4.4032 21 6 4.3317 -0.6014 3.1934 22 6 3.1100 -1.2991 2.9267 23 7 2.1404 -1.8520 2.7156 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3568 2.1326 0.0616 28 1 2.6432 1.3899 -0.9191 29 1 4.1235 2.7218 2.2478 30 1 3.7879 3.1895 0.5635 31 1 3.5738 6.3592 2.4255 32 1 3.8233 -0.4682 0.5338 33 1 4.8176 0.9764 0.2289 34 1 6.4507 1.6176 1.7697 35 1 7.6180 1.2737 3.9069 36 1 4.5984 -1.4740 5.1416 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292270834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:02 Heat of formation + Delta-G solvation = 56.799710 kcal Electronic energy + Delta-G solvation = -20250.839117 eV Core-core repulsion = 17146.907815 eV Total energy + Delta-G solvation = -3103.931303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 15.55 seconds Orbital eigenvalues (eV) -40.87337 -38.58775 -37.61754 -37.10445 -34.95568 -34.30201 -32.43058 -32.26292 -29.27222 -27.44912 -25.71776 -24.93655 -23.15199 -22.06829 -20.60088 -19.71215 -18.51486 -17.28644 -17.05388 -16.64877 -16.49739 -16.03119 -15.61757 -15.32797 -14.95089 -14.70031 -14.26977 -14.07913 -13.98921 -13.94423 -13.78697 -13.55602 -13.22825 -12.93790 -12.71650 -12.58186 -12.42613 -12.33148 -12.15036 -11.97240 -11.88304 -11.63927 -11.23779 -10.56659 -10.28898 -10.01199 -9.62422 -8.99582 -8.16960 -6.23346 -0.27561 0.13719 1.06978 1.40067 1.41527 1.42339 1.51206 1.77446 1.95352 2.41505 2.73688 2.97892 3.16643 3.45533 3.72759 3.80352 4.00685 4.08157 4.21747 4.33294 4.37184 4.49529 4.55734 4.71490 4.81174 4.91699 4.97989 5.01820 5.14909 5.27479 5.34043 5.40423 5.62994 5.68649 5.73392 5.94307 6.10149 6.33095 6.55682 6.62549 6.90783 7.44696 8.93168 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.005926 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.472973 B = 4723.750990 C = 6185.886151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.138 4.138 3 C 0.087 3.913 4 N -0.533 5.533 5 C 0.210 3.790 6 C -0.520 4.520 7 H 0.051 0.949 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.952 3.048 11 H -0.278 1.278 12 H -0.281 1.281 13 H -0.271 1.271 14 C 0.080 3.920 15 C -0.022 4.022 16 C -0.100 4.100 17 C -0.073 4.073 18 C -0.044 4.044 19 Cl -0.056 7.056 20 C -0.064 4.064 21 C -0.012 4.012 22 C 0.278 3.722 23 N -0.441 5.441 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.026 0.974 30 H -0.031 1.031 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.931 -11.498 1.585 14.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.157 4.157 3 C -0.040 4.040 4 N -0.257 5.257 5 C 0.084 3.916 6 C -0.558 4.558 7 H 0.070 0.930 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.778 3.222 11 H -0.204 1.204 12 H -0.206 1.206 13 H -0.196 1.196 14 C -0.048 4.048 15 C -0.026 4.026 16 C -0.119 4.119 17 C -0.092 4.092 18 C -0.071 4.071 19 Cl -0.027 7.027 20 C -0.085 4.085 21 C -0.016 4.016 22 C -0.037 4.037 23 N -0.117 5.117 24 H 0.109 0.891 25 H 0.126 0.874 26 H 0.120 0.880 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.044 0.956 30 H -0.013 1.013 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.167 0.833 35 H 0.180 0.820 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.329 -12.384 1.811 14.025 hybrid contribution 0.070 1.395 -0.170 1.407 sum 6.399 -10.989 1.641 12.822 Atomic orbital electron populations 1.23838 0.95810 1.01883 1.00968 1.22775 0.96153 0.97287 0.99469 1.21112 0.95720 0.95943 0.91213 1.62077 1.14644 1.11507 1.37512 1.19431 0.95417 0.82826 0.93930 1.21391 0.95528 0.95035 1.43884 0.93038 1.25642 0.98385 0.98647 0.95919 1.70021 1.24169 1.12521 1.49727 0.85649 0.80089 0.77886 0.78606 1.20352 1.20630 1.19574 1.21201 0.92102 0.98421 0.93027 1.20003 0.94105 0.93179 0.95285 1.21165 0.94183 0.98586 0.97954 1.21481 1.00743 0.95423 0.91540 1.20684 0.95442 1.01188 0.89746 1.98376 1.77300 1.96081 1.30964 1.21085 0.93126 0.98953 0.95291 1.15689 0.90119 0.99634 0.96135 1.25484 0.92716 0.92421 0.93100 1.81137 1.10669 1.11696 1.08179 0.89069 0.87366 0.87953 0.91462 0.94221 0.95638 1.01328 0.92776 0.89718 0.92725 0.83335 0.82002 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.88 14.32 67.79 0.97 -4.91 16 2 C -0.14 -4.61 9.33 25.65 0.24 -4.37 16 3 C 0.09 3.32 5.26 85.56 0.45 3.77 16 4 N -0.53 -21.42 4.29 -909.95 -3.90 -25.32 16 5 C 0.21 10.23 4.57 85.55 0.39 10.62 16 6 C -0.52 -28.41 8.24 25.60 0.21 -28.20 16 7 H 0.05 2.87 7.31 -2.91 -0.02 2.85 16 8 C 0.01 0.71 5.46 84.66 0.46 1.17 16 9 N -0.92 -52.78 13.29 21.45 0.28 -52.50 16 10 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.08 2.55 4.29 85.56 0.37 2.91 16 15 C -0.02 -0.66 4.67 -19.59 -0.09 -0.75 16 16 C -0.10 -2.57 8.85 22.23 0.20 -2.37 16 17 C -0.07 -1.61 9.82 22.35 0.22 -1.39 16 18 C -0.04 -0.98 6.31 22.29 0.14 -0.84 16 19 Cl -0.06 -1.11 28.95 -2.72 -0.08 -1.19 16 20 C -0.06 -1.51 9.54 22.56 0.22 -1.30 16 21 C -0.01 -0.33 5.73 -21.36 -0.12 -0.46 16 22 C 0.28 8.87 14.01 88.33 1.24 10.11 16 23 N -0.44 -15.37 18.54 19.00 0.35 -15.02 16 24 H 0.09 2.93 7.84 -2.91 -0.02 2.91 16 25 H 0.11 2.96 8.06 -2.91 -0.02 2.94 16 26 H 0.10 3.25 7.26 -2.91 -0.02 3.23 16 27 H 0.07 2.90 6.22 -2.39 -0.01 2.88 16 28 H 0.04 1.40 8.01 -2.39 -0.02 1.39 16 29 H 0.03 1.30 6.57 -2.39 -0.02 1.28 16 30 H -0.03 -1.63 8.12 -2.39 -0.02 -1.65 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.08 2.48 6.36 -2.38 -0.02 2.47 16 33 H 0.05 1.64 7.88 -2.39 -0.02 1.62 16 34 H 0.15 3.53 8.00 -2.91 -0.02 3.51 16 35 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -61.39 332.36 4.66 -56.73 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.09 Total: 7.44 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 4.89 Total: -16.00 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -3.26 Total: -92.84 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -61.39 4.66 -56.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292270834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.526 kcal (2) G-P(sol) polarization free energy of solvation -61.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.55 seconds