Wall clock time and date at job start Tue Mar 31 2020 07:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21624 * 120.00186 * 0.02562 * 14 13 3 16 16 C 1.47263 * 120.00233 * 179.97438 * 14 13 3 17 17 C 1.36770 * 126.94130 * 359.68813 * 16 14 13 18 18 N 1.34661 * 108.39697 * 179.83168 * 17 16 14 19 19 H 0.97001 * 124.85292 * 180.18973 * 18 17 16 20 20 C 1.36443 * 110.29672 * 0.44796 * 18 17 16 21 21 C 1.50701 * 125.57337 * 179.74873 * 20 18 17 22 22 F 1.39903 * 109.46643 * 359.97033 * 21 20 18 23 23 F 1.39898 * 109.47449 * 119.96791 * 21 20 18 24 24 F 1.39900 * 109.47229 * 239.97349 * 21 20 18 25 25 C 1.34484 * 108.85693 * 359.72253 * 20 18 17 26 26 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 28 28 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 29 29 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 30 30 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 31 31 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 33 33 H 1.08001 * 125.79992 * 359.97438 * 17 16 14 34 34 H 1.08001 * 126.83030 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3392 2.6308 0.4489 16 6 0.0614 3.3167 2.6415 17 6 0.8216 3.4274 3.7731 18 7 0.1104 4.0987 4.6989 19 1 0.4247 4.3132 5.5911 20 6 -1.1177 4.4289 4.2044 21 6 -2.1909 5.1782 4.9513 22 9 -1.7355 5.4859 6.2378 23 9 -2.4949 6.3610 4.2689 24 9 -3.3386 4.3831 5.0406 25 6 -1.2136 3.9770 2.9414 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.8033 0.3145 -3.1314 32 1 2.2841 2.1188 1.9977 33 1 1.8230 3.0439 3.9015 34 1 -2.0608 4.0801 2.2795 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292497398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:06 Heat of formation + Delta-G solvation = -150.926721 kcal Electronic energy + Delta-G solvation = -22891.023056 eV Core-core repulsion = 18795.518154 eV Total energy + Delta-G solvation = -4095.504902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 11.07 seconds Orbital eigenvalues (eV) -50.42319 -47.99639 -47.86820 -41.39473 -38.56483 -34.95975 -32.44141 -31.50031 -31.11661 -30.23706 -27.04466 -25.55349 -23.45349 -22.42955 -20.95846 -20.14811 -19.52917 -19.10604 -18.76451 -18.43234 -16.68404 -16.29527 -15.39380 -15.18707 -14.98701 -14.81898 -14.63100 -14.35117 -14.19456 -14.08133 -14.05229 -13.98698 -13.77977 -13.14337 -12.71041 -12.53099 -12.21680 -11.97407 -11.44774 -11.31642 -11.00686 -10.78660 -10.33564 -10.18334 -9.66444 -9.11892 -9.08984 -9.05043 -8.73292 -8.48313 -7.79223 -6.13516 -4.20109 1.58032 2.02569 2.15235 2.81671 3.24494 3.31401 3.32404 3.47950 3.90496 4.07877 4.15769 4.19916 4.42885 4.76588 5.03684 5.19633 5.28005 5.74787 5.84807 6.35856 6.39356 6.45066 6.50542 6.65342 7.00072 7.04130 7.21691 7.36559 7.46054 7.63257 7.74433 7.87959 8.10267 8.70757 8.81057 9.18885 9.46639 10.94354 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.031100 B = 0.003486 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.114382 B = 8031.218341 C = 8497.469222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.270 3.730 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.705 5.705 14 C 0.572 3.428 15 O -0.546 6.546 16 C -0.211 4.211 17 C 0.078 3.922 18 N -0.532 5.532 19 H 0.421 0.579 20 C -0.107 4.107 21 C 0.545 3.455 22 F -0.184 7.184 23 F -0.168 7.168 24 F -0.168 7.168 25 C -0.060 4.060 26 H 0.022 0.978 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.265 0.735 32 H 0.384 0.616 33 H 0.187 0.813 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 6.765 16.505 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.168 3.832 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.352 5.352 14 C 0.358 3.642 15 O -0.425 6.425 16 C -0.221 4.221 17 C -0.059 4.059 18 N -0.128 5.128 19 H 0.259 0.741 20 C -0.216 4.216 21 C 0.490 3.510 22 F -0.165 7.165 23 F -0.149 7.149 24 F -0.149 7.149 25 C -0.087 4.087 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.216 0.784 33 H 0.204 0.796 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.172 6.725 15.754 18.571 hybrid contribution 1.347 0.070 0.861 1.600 sum -5.826 6.796 16.615 18.873 Atomic orbital electron populations 1.21852 0.98024 0.98120 1.01640 1.21850 0.92990 0.99828 1.01249 1.18795 0.94344 0.89005 0.81048 0.92591 1.21177 0.90634 1.43535 1.02148 0.92164 1.24880 0.98377 0.95131 0.95116 1.69967 1.35374 1.43017 1.03277 0.86530 0.85117 0.78555 0.77282 1.20482 1.21170 1.19966 1.46326 1.14173 1.56218 1.18470 1.17195 0.82742 0.78649 0.85638 1.90761 1.51240 1.60252 1.40263 1.20948 0.95619 1.09672 0.95854 1.22256 0.98019 0.97201 0.88433 1.41149 1.11514 1.44874 1.15261 0.74090 1.19723 0.89669 1.15011 0.97233 1.17264 0.80625 0.77088 0.76030 1.93167 1.88899 1.93555 1.40912 1.93255 1.93685 1.48363 1.79604 1.93253 1.51913 1.73788 1.95971 1.21877 0.98031 0.96351 0.92409 0.95870 0.92972 0.93871 0.94843 0.89963 0.92548 0.78360 0.79597 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.52 37.15 0.32 -2.75 16 2 C -0.12 -2.84 5.49 -26.74 -0.15 -2.98 16 3 C 0.27 6.61 2.11 -69.09 -0.15 6.47 16 4 H 0.06 1.62 7.55 -51.93 -0.39 1.22 16 5 C -0.54 -13.77 8.67 -34.44 -0.30 -14.07 16 6 H 0.06 1.46 7.73 -52.48 -0.41 1.06 16 7 C 0.07 1.81 5.19 -17.82 -0.09 1.72 16 8 N -0.88 -24.51 12.00 55.43 0.67 -23.85 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.16 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.70 -13.98 5.01 -56.07 -0.28 -14.26 16 14 C 0.57 11.26 6.39 -12.59 -0.08 11.18 16 15 O -0.55 -12.82 14.10 5.26 0.07 -12.74 16 16 C -0.21 -3.19 6.29 -103.35 -0.65 -3.84 16 17 C 0.08 0.84 11.40 -16.84 -0.19 0.65 16 18 N -0.53 -4.90 5.80 -9.12 -0.05 -4.95 16 19 H 0.42 2.48 8.65 -40.82 -0.35 2.13 16 20 C -0.11 -1.22 6.40 -81.87 -0.52 -1.74 16 21 C 0.54 5.69 3.47 36.01 0.12 5.81 16 22 F -0.18 -1.72 16.91 2.25 0.04 -1.69 16 23 F -0.17 -1.87 17.30 2.25 0.04 -1.83 16 24 F -0.17 -1.86 17.30 2.25 0.04 -1.82 16 25 C -0.06 -0.84 10.86 -37.50 -0.41 -1.25 16 26 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 1.23 7.86 -51.93 -0.41 0.82 16 28 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 2.14 6.64 -51.93 -0.34 1.80 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.38 6.34 7.47 -40.82 -0.30 6.03 16 33 H 0.19 1.39 7.45 -52.49 -0.39 1.00 16 34 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 305.74 15.07 4.61 4.61 Total: -1.00 -30.93 305.74 -5.29 -36.21 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -3.30 Total: 5.95 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.10 Total: -0.80 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.33 Total: -43.06 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.12 Total: -5.34 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.93 -5.29 -36.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292497398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.716 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.07 seconds