Wall clock time and date at job start Tue Mar 31 2020 07:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21624 * 120.00186 * 0.02562 * 14 13 3 16 16 C 1.47263 * 120.00233 * 179.97438 * 14 13 3 17 17 C 1.36770 * 126.94130 * 359.68813 * 16 14 13 18 18 N 1.34661 * 108.39697 * 179.83168 * 17 16 14 19 19 H 0.97001 * 124.85292 * 180.18973 * 18 17 16 20 20 C 1.36443 * 110.29672 * 0.44796 * 18 17 16 21 21 C 1.50701 * 125.57337 * 179.74873 * 20 18 17 22 22 F 1.39903 * 109.46643 * 359.97033 * 21 20 18 23 23 F 1.39898 * 109.47449 * 119.96791 * 21 20 18 24 24 F 1.39900 * 109.47229 * 239.97349 * 21 20 18 25 25 C 1.34484 * 108.85693 * 359.72253 * 20 18 17 26 26 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 28 28 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 29 29 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 30 30 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 31 31 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 33 33 H 1.08001 * 125.79992 * 359.97438 * 17 16 14 34 34 H 1.08001 * 126.83030 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3392 2.6308 0.4489 16 6 0.0614 3.3167 2.6415 17 6 0.8216 3.4274 3.7731 18 7 0.1104 4.0987 4.6989 19 1 0.4247 4.3132 5.5911 20 6 -1.1177 4.4289 4.2044 21 6 -2.1909 5.1782 4.9513 22 9 -1.7355 5.4859 6.2378 23 9 -2.4949 6.3610 4.2689 24 9 -3.3386 4.3831 5.0406 25 6 -1.2136 3.9770 2.9414 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.8033 0.3145 -3.1314 32 1 2.2841 2.1188 1.9977 33 1 1.8230 3.0439 3.9015 34 1 -2.0608 4.0801 2.2795 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292497398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:06 Heat of formation + Delta-G solvation = -171.777802 kcal Electronic energy + Delta-G solvation = -22891.927227 eV Core-core repulsion = 18795.518154 eV Total energy + Delta-G solvation = -4096.409072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.26651 -48.81184 -48.73978 -42.37909 -40.16987 -36.78892 -34.26725 -33.12501 -32.13700 -31.50108 -28.89721 -26.57099 -25.13295 -23.94647 -21.94171 -21.61324 -20.84083 -20.50840 -19.61520 -19.32944 -18.39660 -17.39575 -16.94857 -16.80287 -16.24878 -15.91584 -15.68987 -15.62679 -15.20530 -15.16829 -14.94001 -14.90210 -14.73230 -14.70730 -14.52722 -13.77654 -13.54131 -13.36083 -13.25376 -13.15756 -12.84531 -12.58269 -12.15165 -12.02437 -11.56933 -11.02358 -10.72319 -10.48177 -10.11905 -9.81655 -9.48022 -8.13470 -6.27502 0.66007 0.85618 1.26826 1.48759 1.49415 1.58821 1.98229 2.39981 2.56682 2.66969 2.89004 3.09713 3.18636 3.27720 3.90963 4.01671 4.29610 4.52404 4.58365 4.59642 4.76916 4.81220 5.11994 5.27285 5.34420 5.47748 5.49881 5.60652 5.67907 5.82002 6.00913 6.14250 6.28398 6.82092 7.11992 7.39635 7.70548 8.94946 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.031100 B = 0.003486 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.114382 B = 8031.218341 C = 8497.469222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.077 0.923 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.262 1.262 13 N -0.699 5.699 14 C 0.571 3.429 15 O -0.596 6.596 16 C -0.256 4.256 17 C 0.120 3.880 18 N -0.510 5.510 19 H 0.443 0.557 20 C -0.098 4.098 21 C 0.553 3.447 22 F -0.173 7.173 23 F -0.172 7.172 24 F -0.171 7.171 25 C -0.082 4.082 26 H 0.046 0.954 27 H 0.023 0.977 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.263 0.737 32 H 0.404 0.596 33 H 0.227 0.773 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.056 7.058 19.687 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.095 0.905 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.186 1.186 13 N -0.347 5.347 14 C 0.360 3.640 15 O -0.479 6.479 16 C -0.266 4.266 17 C -0.020 4.020 18 N -0.107 5.107 19 H 0.285 0.715 20 C -0.208 4.208 21 C 0.498 3.502 22 F -0.154 7.154 23 F -0.153 7.153 24 F -0.153 7.153 25 C -0.109 4.109 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.239 0.761 33 H 0.244 0.756 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.594 7.046 19.025 21.045 hybrid contribution 0.801 0.041 -0.067 0.805 sum -4.793 7.087 18.958 20.799 Atomic orbital electron populations 1.21690 0.97011 0.99148 1.00407 1.21701 0.93791 0.99149 1.00525 1.18361 0.93817 0.89027 0.81431 0.98242 1.21568 0.91274 1.42973 1.02552 0.90509 1.25780 1.03090 0.94842 0.94765 1.70133 1.37424 1.44207 1.03911 0.85424 0.79340 0.79025 0.76926 1.19596 1.21807 1.18618 1.45995 1.14974 1.56212 1.17549 1.17771 0.81798 0.77765 0.86677 1.90731 1.52560 1.62084 1.42540 1.20488 0.97602 1.12912 0.95572 1.22670 0.98468 0.94303 0.86551 1.41154 1.10368 1.43212 1.15917 0.71512 1.19655 0.90516 1.14185 0.96398 1.17060 0.80192 0.76741 0.76248 1.93193 1.88725 1.93440 1.40042 1.93252 1.93685 1.48581 1.79820 1.93252 1.52106 1.73912 1.96001 1.21866 0.97842 0.97511 0.93640 0.93518 0.95796 0.93516 0.93117 0.92845 0.92767 0.76099 0.75624 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.52 71.98 0.61 -5.04 16 2 C -0.11 -5.41 5.49 30.59 0.17 -5.24 16 3 C 0.28 13.92 2.11 44.25 0.09 14.01 16 4 H 0.00 -0.02 7.55 -2.38 -0.02 -0.04 16 5 C -0.55 -27.88 8.67 25.60 0.22 -27.66 16 6 H 0.08 3.58 7.73 -2.91 -0.02 3.55 16 7 C 0.02 0.81 5.19 84.65 0.44 1.25 16 8 N -0.92 -52.77 12.00 21.45 0.26 -52.51 16 9 Si 0.97 41.06 29.54 68.60 2.03 43.09 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 13 N -0.70 -27.49 5.01 -449.55 -2.25 -29.75 16 14 C 0.57 22.76 6.39 86.62 0.55 23.31 16 15 O -0.60 -29.47 14.10 -4.11 -0.06 -29.53 16 16 C -0.26 -7.45 6.29 -19.04 -0.12 -7.57 16 17 C 0.12 2.13 11.40 83.91 0.96 3.08 16 18 N -0.51 -7.35 5.80 -182.76 -1.06 -8.41 16 19 H 0.44 3.00 8.65 -92.71 -0.80 2.20 16 20 C -0.10 -2.00 6.40 40.98 0.26 -1.74 16 21 C 0.55 10.36 3.47 71.24 0.25 10.60 16 22 F -0.17 -2.70 16.91 44.97 0.76 -1.94 16 23 F -0.17 -3.58 17.30 44.97 0.78 -2.80 16 24 F -0.17 -3.52 17.30 44.97 0.78 -2.74 16 25 C -0.08 -2.25 10.86 23.62 0.26 -2.00 16 26 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.02 1.17 7.86 -2.39 -0.02 1.15 16 28 H 0.05 2.05 5.64 -2.38 -0.01 2.04 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 2.87 6.64 -2.38 -0.02 2.86 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.40 12.41 7.47 -92.71 -0.69 11.72 16 33 H 0.23 2.12 7.45 -2.91 -0.02 2.10 16 34 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -70.74 305.74 4.61 -66.14 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -0.32 Total: 15.44 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 3.69 Total: 3.02 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -3.06 Total: -90.67 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.06 Total: -29.53 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 2.32 Total: -7.48 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -70.74 4.61 -66.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292497398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.642 kcal (2) G-P(sol) polarization free energy of solvation -70.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds