Wall clock time and date at job start Tue Mar 31 2020 07:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47082 * 2 1 4 4 C 1.50707 * 109.46856 * 119.99298 * 2 1 3 5 5 H 1.08000 * 119.99545 * 120.00596 * 4 2 1 6 6 C 1.37869 * 120.00067 * 299.99997 * 4 2 1 7 7 N 1.31515 * 120.00417 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99916 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47025 * 0.02562 * 8 6 4 10 10 H 1.48512 * 109.46980 * 120.00160 * 8 6 4 11 11 H 1.48498 * 109.47458 * 239.99926 * 8 6 4 12 12 N 1.46500 * 109.47571 * 239.99407 * 2 1 3 13 13 C 1.46502 * 119.99741 * 300.00262 * 12 2 1 14 14 C 1.34771 * 119.99961 * 119.99978 * 12 2 1 15 15 O 1.21628 * 120.00257 * 1.74047 * 14 12 2 16 16 C 1.47265 * 120.00063 * 181.74686 * 14 12 2 17 17 C 1.36767 * 126.94459 * 163.24615 * 16 14 12 18 18 N 1.34659 * 108.39488 * 179.97438 * 17 16 14 19 19 H 0.97010 * 124.84739 * 180.02562 * 18 17 16 20 20 C 1.36439 * 110.30002 * 0.02562 * 18 17 16 21 21 C 1.50708 * 125.57088 * 179.73583 * 20 18 17 22 22 F 1.39903 * 109.47042 * 0.02562 * 21 20 18 23 23 F 1.39898 * 109.46845 * 120.02132 * 21 20 18 24 24 F 1.39897 * 109.46926 * 240.02014 * 21 20 18 25 25 C 1.34488 * 108.85909 * 359.97438 * 20 18 17 26 26 H 1.09001 * 109.46732 * 60.00845 * 1 2 3 27 27 H 1.09006 * 109.46601 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46990 * 300.00426 * 1 2 3 29 29 H 0.97000 * 120.00564 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.46881 * 264.32514 * 13 12 2 31 31 H 1.08996 * 109.47170 * 24.32875 * 13 12 2 32 32 H 1.08999 * 109.47011 * 144.32800 * 13 12 2 33 33 H 1.07994 * 125.80229 * 359.97438 * 17 16 14 34 34 H 1.08001 * 126.83567 * 180.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.1463 -2.2867 3.6040 10 1 3.1465 -0.1869 4.8166 11 1 1.1659 -1.5862 4.8163 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0832 15 8 3.1132 1.1191 -1.8751 16 6 3.2525 -0.7184 -3.3046 17 6 3.7576 -0.1332 -4.4329 18 7 4.0588 -1.1036 -5.3165 19 1 4.4337 -0.9533 -6.1985 20 6 3.7612 -2.3284 -4.7942 21 6 3.9560 -3.6499 -5.4920 22 9 4.4924 -3.4303 -6.7653 23 9 4.8333 -4.4456 -4.7473 24 9 2.7232 -4.3006 -5.6110 25 6 3.2608 -2.1634 -3.5568 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7086 1.1616 3.4843 30 1 2.4649 -2.7354 -1.0603 31 1 0.7400 -2.3268 -0.8997 32 1 1.5253 -2.2613 -2.4957 33 1 3.8921 0.9270 -4.5886 34 1 2.9309 -2.9402 -2.8829 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292627944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:01 Heat of formation + Delta-G solvation = -145.382504 kcal Electronic energy + Delta-G solvation = -23296.408229 eV Core-core repulsion = 19201.143743 eV Total energy + Delta-G solvation = -4095.264486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.23375 -48.78451 -48.69898 -42.46671 -40.19789 -37.08852 -34.88119 -32.71074 -31.77049 -30.75368 -27.89132 -27.27012 -26.42968 -24.65660 -22.06213 -21.82428 -20.85195 -19.57950 -19.36381 -19.21467 -18.40577 -17.61850 -16.95713 -16.70614 -16.23358 -16.01270 -15.63163 -15.59335 -15.15789 -15.09449 -15.03079 -14.86288 -14.84762 -14.58736 -14.38658 -13.95780 -13.61076 -13.45436 -13.17210 -12.95518 -12.75055 -12.66187 -12.30607 -12.12473 -12.08384 -11.13747 -10.77046 -10.48392 -10.06585 -9.81342 -9.24338 -8.11582 -6.27834 0.65030 0.84431 1.28094 1.42694 1.44516 1.55930 1.97389 2.37051 2.48474 2.56068 2.70498 3.12000 3.16181 3.30905 3.89690 4.01185 4.21062 4.35751 4.48189 4.72327 4.72691 4.80568 4.92578 5.05163 5.10256 5.31041 5.45859 5.51972 5.70585 5.72257 6.07946 6.19863 6.26040 6.80054 6.89483 7.35942 7.53827 8.92862 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.024808 B = 0.004079 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.413057 B = 6863.013055 C = 7349.530355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.012 0.988 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.594 5.594 13 C 0.075 3.925 14 C 0.567 3.433 15 O -0.610 6.610 16 C -0.253 4.253 17 C 0.129 3.871 18 N -0.511 5.511 19 H 0.442 0.558 20 C -0.096 4.096 21 C 0.553 3.447 22 F -0.175 7.175 23 F -0.171 7.171 24 F -0.168 7.168 25 C -0.102 4.102 26 H 0.021 0.979 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.264 0.736 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.210 0.790 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.811 -10.022 -19.171 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.030 0.970 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.067 4.067 14 C 0.358 3.642 15 O -0.494 6.494 16 C -0.262 4.262 17 C -0.012 4.012 18 N -0.108 5.108 19 H 0.284 0.716 20 C -0.206 4.206 21 C 0.498 3.502 22 F -0.156 7.156 23 F -0.152 7.152 24 F -0.149 7.149 25 C -0.127 4.127 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.227 0.773 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.926 -9.424 -19.085 21.848 hybrid contribution 0.343 -0.135 0.746 0.832 sum 5.269 -9.558 -18.339 21.341 Atomic orbital electron populations 1.21886 0.97037 1.00162 1.00018 1.18578 0.91684 0.92318 0.81556 0.97035 1.21604 1.31739 1.12954 0.91181 0.92307 1.25714 0.95097 0.95652 1.01935 1.70024 1.37377 1.23919 1.24328 0.85413 0.78209 0.78472 0.78936 1.19049 1.21141 1.19932 1.48013 1.48720 1.13215 1.22293 1.22297 1.01261 0.80801 1.02366 1.17920 0.77978 0.85223 0.83068 1.90693 1.60267 1.19796 1.78669 1.20358 1.15608 0.93758 0.96490 1.22249 0.95838 0.95420 0.87654 1.41170 1.49250 1.03222 1.17122 0.71638 1.19856 1.17006 0.86176 0.97575 1.17040 0.74179 0.83112 0.75840 1.93192 1.86435 1.94741 1.41273 1.93259 1.69541 1.75723 1.76668 1.93259 1.43120 1.82784 1.95760 1.22700 0.99763 0.95567 0.94711 0.96023 0.93361 0.91280 0.92655 0.92325 0.91069 0.88585 0.77306 0.80504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.96 71.98 0.64 -5.84 16 2 C 0.26 13.87 2.63 44.25 0.12 13.99 16 3 H 0.01 0.74 6.90 -2.39 -0.02 0.72 16 4 C -0.54 -29.69 8.37 25.60 0.21 -29.48 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.16 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -53.27 11.32 21.44 0.24 -53.03 16 8 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.59 -26.14 2.75 -830.86 -2.29 -28.43 16 13 C 0.07 2.48 7.98 127.77 1.02 3.50 16 14 C 0.57 24.50 7.66 86.62 0.66 25.16 16 15 O -0.61 -31.54 16.28 -4.12 -0.07 -31.60 16 16 C -0.25 -7.77 5.97 -19.04 -0.11 -7.89 16 17 C 0.13 2.83 11.73 83.91 0.98 3.81 16 18 N -0.51 -8.14 5.80 -182.76 -1.06 -9.20 16 19 H 0.44 3.71 8.65 -92.70 -0.80 2.91 16 20 C -0.10 -1.89 6.40 40.99 0.26 -1.62 16 21 C 0.55 9.67 3.47 71.24 0.25 9.92 16 22 F -0.18 -2.67 16.91 44.97 0.76 -1.91 16 23 F -0.17 -3.31 17.30 44.97 0.78 -2.53 16 24 F -0.17 -3.09 17.30 44.97 0.78 -2.32 16 25 C -0.10 -2.51 8.64 23.62 0.20 -2.31 16 26 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 2.13 6.67 -2.38 -0.02 2.12 16 28 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 29 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.06 1.82 7.51 -2.39 -0.02 1.80 16 31 H 0.07 2.38 6.44 -2.39 -0.02 2.36 16 32 H 0.10 2.55 5.04 -2.39 -0.01 2.54 16 33 H 0.21 3.72 8.06 -2.91 -0.02 3.69 16 34 H 0.18 3.98 5.13 -2.91 -0.01 3.97 16 Total: -1.00 -71.73 300.19 6.24 -65.49 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.38 Total: 7.40 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 4.69 Total: 10.55 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -3.10 Total: -90.66 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.07 Total: -31.60 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 2.32 Total: -6.75 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -71.73 6.24 -65.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292627944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.895 kcal (2) G-P(sol) polarization free energy of solvation -71.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds