Wall clock time and date at job start Tue Mar 31 2020 06:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48498 * 109.47053 * 269.99654 * 3 2 1 5 5 H 1.48502 * 109.47301 * 29.99198 * 3 2 1 6 6 H 1.48501 * 109.47563 * 149.99400 * 3 2 1 7 7 C 1.37876 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 0.02562 * 7 2 1 9 9 C 1.50710 * 120.00043 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46609 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47002 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00294 * 180.02562 * 12 11 10 14 14 O 1.21627 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.47268 * 120.00175 * 180.02562 * 13 12 11 16 16 C 1.36767 * 126.94033 * 0.02562 * 15 13 12 17 17 N 1.34656 * 108.39427 * 179.97438 * 16 15 13 18 18 H 0.96996 * 124.85422 * 180.02562 * 17 16 15 19 19 C 1.36455 * 110.29848 * 0.02562 * 17 16 15 20 20 C 1.50705 * 125.56999 * 179.73823 * 19 17 16 21 21 F 1.39901 * 109.47176 * 0.02654 * 20 19 17 22 22 F 1.39897 * 109.46958 * 120.02202 * 20 19 17 23 23 F 1.39895 * 109.46722 * 240.02482 * 20 19 17 24 24 C 1.34484 * 108.85548 * 359.97438 * 19 17 16 25 25 H 0.96993 * 120.00054 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46724 * 60.00287 * 9 7 2 27 27 H 1.09000 * 109.46919 * 300.00462 * 9 7 2 28 28 H 1.08995 * 109.47466 * 60.00199 * 10 9 7 29 29 H 1.08996 * 109.47060 * 299.99896 * 10 9 7 30 30 H 1.09003 * 109.46850 * 60.00239 * 11 10 9 31 31 H 1.09000 * 109.47121 * 300.00212 * 11 10 9 32 32 H 0.97001 * 119.99742 * 359.97438 * 12 11 10 33 33 H 1.07992 * 125.80550 * 359.97438 * 16 15 13 34 34 H 1.07998 * 126.83004 * 179.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5516 -2.6365 0.0009 12 7 6.0400 -4.0177 0.0002 13 6 7.3650 -4.2640 0.0006 14 8 8.1553 -3.3395 0.0010 15 6 7.8559 -5.6524 -0.0008 16 6 7.0993 -6.7917 -0.0029 17 7 7.9287 -7.8526 -0.0040 18 1 7.6430 -8.7795 -0.0059 19 6 9.2285 -7.4373 -0.0022 20 6 10.4366 -8.3382 0.0029 21 9 10.0220 -9.6743 0.0048 22 9 11.2075 -8.0908 -1.1380 23 9 11.2017 -8.0857 1.1465 24 6 9.2551 -6.0927 -0.0003 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8912 27 1 3.8753 -0.6804 -0.8888 28 1 3.6586 -3.1502 -0.8892 29 1 3.6579 -3.1505 0.8907 30 1 5.9149 -2.1227 0.8910 31 1 5.9149 -2.1226 -0.8890 32 1 5.4096 -4.7549 0.0002 33 1 6.0202 -6.8335 -0.0035 34 1 10.1322 -5.4626 0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292719772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:34 Heat of formation + Delta-G solvation = -156.242591 kcal Electronic energy + Delta-G solvation = -21752.570583 eV Core-core repulsion = 17656.835168 eV Total energy + Delta-G solvation = -4095.735415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.64081 -48.21054 -48.08821 -41.78139 -39.09433 -35.50155 -33.36678 -31.90841 -31.49649 -30.83444 -27.39373 -25.81671 -23.79370 -22.21820 -21.25063 -20.64431 -20.21927 -19.30269 -18.98380 -18.64487 -16.89075 -16.66910 -16.25539 -15.52670 -15.41893 -15.07791 -15.02271 -14.69139 -14.55638 -14.31078 -14.26312 -14.19028 -14.11458 -13.75203 -13.55217 -12.91785 -12.73732 -12.52115 -12.02137 -11.91633 -11.09550 -10.90429 -10.26047 -10.00155 -9.80598 -9.63497 -9.49661 -9.24341 -9.19310 -8.81300 -8.56763 -6.07791 -4.06609 1.21875 1.56464 1.87827 2.52326 3.14591 3.30894 3.38596 3.42945 3.43082 3.47050 3.65724 3.90321 4.38449 4.43532 4.58375 4.87968 5.21642 5.26547 5.37088 5.58195 5.65317 5.97175 6.00968 6.12804 6.34181 6.43407 6.63904 6.70275 6.78002 7.21518 7.35046 7.64284 7.75455 8.35343 8.48637 8.95771 9.54613 11.05428 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.047356 B = 0.002390 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.130473 B =11712.086801 C =12112.814422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.723 5.723 13 C 0.583 3.417 14 O -0.543 6.543 15 C -0.223 4.223 16 C 0.088 3.912 17 N -0.528 5.528 18 H 0.425 0.575 19 C -0.102 4.102 20 C 0.545 3.455 21 F -0.182 7.182 22 F -0.167 7.167 23 F -0.166 7.166 24 C -0.057 4.057 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.189 0.811 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.988 -20.766 0.022 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.373 5.373 13 C 0.370 3.630 14 O -0.421 6.421 15 C -0.232 4.232 16 C -0.051 4.051 17 N -0.123 5.123 18 H 0.263 0.737 19 C -0.211 4.211 20 C 0.490 3.510 21 F -0.163 7.163 22 F -0.148 7.148 23 F -0.148 7.148 24 C -0.083 4.083 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.230 0.770 33 H 0.206 0.794 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 19.423 -20.130 0.025 27.973 hybrid contribution -0.022 -0.082 -0.024 0.088 sum 19.401 -20.212 0.001 28.017 Atomic orbital electron populations 1.69909 1.06333 1.26985 1.51008 1.25031 0.94749 0.99271 0.94447 0.86774 0.80424 0.83487 0.78611 1.20238 1.21391 1.18836 1.21094 0.89321 0.94481 1.51124 0.91036 1.19509 0.97240 0.91495 0.96726 1.21705 0.90641 1.01078 1.01680 1.21667 0.96043 0.80911 1.02125 1.45975 1.06197 1.09988 1.75172 1.17244 0.82375 0.86963 0.76384 1.90791 1.55476 1.45414 1.50456 1.20589 0.93031 0.92821 1.16802 1.22255 0.96712 0.85325 1.00785 1.41198 1.04064 1.09835 1.57252 0.73666 1.19788 0.84661 0.94192 1.22472 1.17233 0.82211 0.77291 0.74309 1.93182 1.90166 1.36672 1.96305 1.93264 1.76836 1.93953 1.50724 1.93264 1.77130 1.93859 1.50515 1.21867 0.97224 0.90954 0.98269 0.92689 0.96255 0.96698 0.92129 0.92097 0.91627 0.91636 0.77001 0.79378 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.86 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.45 9.66 -34.44 -0.33 -14.79 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.69 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.01 5.27 -26.73 -0.14 -2.15 16 11 C 0.12 1.83 5.67 -4.04 -0.02 1.81 16 12 N -0.72 -9.27 5.55 -61.43 -0.34 -9.61 16 13 C 0.58 8.27 7.81 -12.59 -0.10 8.17 16 14 O -0.54 -9.98 16.97 5.25 0.09 -9.89 16 15 C -0.22 -2.38 6.29 -103.35 -0.65 -3.03 16 16 C 0.09 0.59 11.40 -16.84 -0.19 0.40 16 17 N -0.53 -3.15 5.80 -9.12 -0.05 -3.20 16 18 H 0.42 1.27 8.65 -40.82 -0.35 0.91 16 19 C -0.10 -0.85 6.40 -81.86 -0.52 -1.37 16 20 C 0.54 4.34 3.47 36.01 0.12 4.46 16 21 F -0.18 -1.31 16.91 2.25 0.04 -1.27 16 22 F -0.17 -1.46 17.30 2.25 0.04 -1.42 16 23 F -0.17 -1.46 17.30 2.25 0.04 -1.42 16 24 C -0.06 -0.59 10.86 -37.50 -0.41 -1.00 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.40 3.74 7.42 -40.82 -0.30 3.44 16 33 H 0.19 0.58 7.45 -52.49 -0.39 0.19 16 34 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -34.20 313.56 -5.33 -39.52 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.51 Total: -1.48 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.45 Total: -6.08 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.38 Total: -39.53 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.12 Total: -4.12 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.20 -5.33 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292719772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.721 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds