Wall clock time and date at job start Tue Mar 31 2020 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48498 * 109.47053 * 269.99654 * 3 2 1 5 5 H 1.48502 * 109.47301 * 29.99198 * 3 2 1 6 6 H 1.48501 * 109.47563 * 149.99400 * 3 2 1 7 7 C 1.37876 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 0.02562 * 7 2 1 9 9 C 1.50710 * 120.00043 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46609 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47002 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00294 * 180.02562 * 12 11 10 14 14 O 1.21627 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.47268 * 120.00175 * 180.02562 * 13 12 11 16 16 C 1.36767 * 126.94033 * 0.02562 * 15 13 12 17 17 N 1.34656 * 108.39427 * 179.97438 * 16 15 13 18 18 H 0.96996 * 124.85422 * 180.02562 * 17 16 15 19 19 C 1.36455 * 110.29848 * 0.02562 * 17 16 15 20 20 C 1.50705 * 125.56999 * 179.73823 * 19 17 16 21 21 F 1.39901 * 109.47176 * 0.02654 * 20 19 17 22 22 F 1.39897 * 109.46958 * 120.02202 * 20 19 17 23 23 F 1.39895 * 109.46722 * 240.02482 * 20 19 17 24 24 C 1.34484 * 108.85548 * 359.97438 * 19 17 16 25 25 H 0.96993 * 120.00054 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46724 * 60.00287 * 9 7 2 27 27 H 1.09000 * 109.46919 * 300.00462 * 9 7 2 28 28 H 1.08995 * 109.47466 * 60.00199 * 10 9 7 29 29 H 1.08996 * 109.47060 * 299.99896 * 10 9 7 30 30 H 1.09003 * 109.46850 * 60.00239 * 11 10 9 31 31 H 1.09000 * 109.47121 * 300.00212 * 11 10 9 32 32 H 0.97001 * 119.99742 * 359.97438 * 12 11 10 33 33 H 1.07992 * 125.80550 * 359.97438 * 16 15 13 34 34 H 1.07998 * 126.83004 * 179.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5516 -2.6365 0.0009 12 7 6.0400 -4.0177 0.0002 13 6 7.3650 -4.2640 0.0006 14 8 8.1553 -3.3395 0.0010 15 6 7.8559 -5.6524 -0.0008 16 6 7.0993 -6.7917 -0.0029 17 7 7.9287 -7.8526 -0.0040 18 1 7.6430 -8.7795 -0.0059 19 6 9.2285 -7.4373 -0.0022 20 6 10.4366 -8.3382 0.0029 21 9 10.0220 -9.6743 0.0048 22 9 11.2075 -8.0908 -1.1380 23 9 11.2017 -8.0857 1.1465 24 6 9.2551 -6.0927 -0.0003 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8912 27 1 3.8753 -0.6804 -0.8888 28 1 3.6586 -3.1502 -0.8892 29 1 3.6579 -3.1505 0.8907 30 1 5.9149 -2.1227 0.8910 31 1 5.9149 -2.1226 -0.8890 32 1 5.4096 -4.7549 0.0002 33 1 6.0202 -6.8335 -0.0035 34 1 10.1322 -5.4626 0.0018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292719772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:33 Heat of formation + Delta-G solvation = -180.371617 kcal Electronic energy + Delta-G solvation = -21753.616896 eV Core-core repulsion = 17656.835168 eV Total energy + Delta-G solvation = -4096.781728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.28393 -48.83227 -48.75968 -42.44513 -40.20359 -36.91849 -35.12351 -33.42945 -32.27238 -31.77735 -28.97340 -26.61584 -25.07430 -23.45598 -22.19003 -21.91485 -20.93974 -20.31085 -19.63372 -19.32302 -18.90295 -17.46853 -17.17922 -16.67730 -16.60548 -16.09018 -15.86155 -15.65749 -15.51628 -15.20344 -14.96454 -14.92682 -14.91012 -14.78729 -14.75549 -14.63791 -13.81703 -13.59494 -13.55456 -13.22393 -12.70584 -12.65906 -11.90443 -11.75883 -11.55154 -11.29466 -11.02514 -10.73718 -10.25820 -10.05536 -9.73505 -8.27263 -6.30501 0.59407 0.74597 1.24614 1.38684 1.40671 1.52106 1.93144 2.27058 2.38387 2.45552 2.69120 3.06312 3.08947 3.25413 3.78783 3.94216 4.14112 4.23333 4.26717 4.48669 4.56266 4.71234 4.94253 4.99360 5.09013 5.25520 5.43525 5.44069 5.55866 5.60678 5.68211 6.21969 6.30147 6.67428 6.78077 7.33037 7.34557 8.89010 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.047356 B = 0.002390 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.130473 B =11712.086801 C =12112.814422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.527 4.527 8 H 0.040 0.960 9 C -0.014 4.014 10 C -0.099 4.099 11 C 0.127 3.873 12 N -0.710 5.710 13 C 0.584 3.416 14 O -0.596 6.596 15 C -0.262 4.262 16 C 0.127 3.873 17 N -0.511 5.511 18 H 0.443 0.557 19 C -0.099 4.099 20 C 0.550 3.450 21 F -0.174 7.174 22 F -0.172 7.172 23 F -0.172 7.172 24 C -0.079 4.079 25 H 0.265 0.735 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.415 0.585 33 H 0.233 0.767 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.603 -22.216 0.004 29.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.566 4.566 8 H 0.059 0.941 9 C -0.053 4.053 10 C -0.137 4.137 11 C 0.003 3.997 12 N -0.362 5.362 13 C 0.373 3.627 14 O -0.478 6.478 15 C -0.271 4.271 16 C -0.014 4.014 17 N -0.107 5.107 18 H 0.285 0.715 19 C -0.209 4.209 20 C 0.495 3.505 21 F -0.156 7.156 22 F -0.154 7.154 23 F -0.153 7.153 24 C -0.105 4.105 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.252 0.748 33 H 0.249 0.751 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 20.035 -21.658 0.007 29.504 hybrid contribution -0.255 0.233 -0.019 0.346 sum 19.780 -21.425 -0.012 29.159 Atomic orbital electron populations 1.70052 1.08175 1.28057 1.52890 1.25961 0.95556 1.03355 0.94364 0.85732 0.79555 0.78707 0.79122 1.19349 1.21201 1.17140 1.21479 0.91893 0.93265 1.49917 0.94129 1.19489 0.94054 0.94955 0.96752 1.21473 0.91776 0.97974 1.02445 1.21300 0.94449 0.82596 1.01322 1.45710 1.06382 1.09348 1.74739 1.17680 0.82027 0.87916 0.75059 1.90758 1.56709 1.47302 1.53050 1.20302 0.93777 0.92117 1.20922 1.22777 0.98157 0.83829 0.96613 1.41240 1.03069 1.10815 1.55614 0.71471 1.19671 0.85667 0.93484 1.22055 1.17133 0.81949 0.77513 0.73927 1.93198 1.90037 1.36067 1.96249 1.93255 1.77024 1.94037 1.51037 1.93254 1.77317 1.93944 1.50832 1.21901 0.97232 0.91943 0.99417 0.92578 0.96200 0.96318 0.91360 0.91374 0.92600 0.92532 0.74773 0.75118 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.72 13.96 21.45 0.30 -58.43 16 2 C 0.00 0.25 5.47 84.65 0.46 0.72 16 3 Si 0.94 43.99 27.47 68.60 1.88 45.87 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 7 C -0.53 -29.25 9.66 25.60 0.25 -29.00 16 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 9 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 10 C -0.10 -3.34 5.27 30.60 0.16 -3.18 16 11 C 0.13 3.86 5.67 86.38 0.49 4.35 16 12 N -0.71 -16.81 5.55 -466.52 -2.59 -19.40 16 13 C 0.58 16.02 7.81 86.62 0.68 16.70 16 14 O -0.60 -22.25 16.97 -4.12 -0.07 -22.32 16 15 C -0.26 -5.17 6.29 -19.04 -0.12 -5.29 16 16 C 0.13 1.22 11.40 83.91 0.96 2.18 16 17 N -0.51 -4.30 5.80 -182.76 -1.06 -5.36 16 18 H 0.44 0.77 8.65 -92.71 -0.80 -0.04 16 19 C -0.10 -1.46 6.40 40.98 0.26 -1.20 16 20 C 0.55 7.94 3.47 71.24 0.25 8.18 16 21 F -0.17 -2.11 16.91 44.97 0.76 -1.35 16 22 F -0.17 -2.86 17.30 44.97 0.78 -2.08 16 23 F -0.17 -2.86 17.30 44.97 0.78 -2.08 16 24 C -0.08 -1.58 10.86 23.62 0.26 -1.32 16 25 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 27 H 0.02 0.81 7.57 -2.39 -0.02 0.80 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.42 6.46 7.42 -92.71 -0.69 5.77 16 33 H 0.23 0.11 7.45 -2.91 -0.02 0.09 16 34 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -76.00 313.56 4.17 -71.83 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -0.38 Total: 1.71 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 3.76 Total: -8.39 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -3.35 Total: -83.19 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.07 Total: -22.32 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 2.32 Total: -5.51 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -76.00 4.17 -71.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292719772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.539 kcal (2) G-P(sol) polarization free energy of solvation -76.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds