Wall clock time and date at job start Tue Mar 31 2020 07:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47344 * 2 1 4 4 C 1.52991 * 109.47578 * 239.99617 * 2 1 3 5 5 C 1.50699 * 109.47631 * 175.00624 * 4 2 1 6 6 H 1.07998 * 119.99266 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00452 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99835 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99930 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47344 * 60.00007 * 9 7 5 11 11 H 1.48505 * 109.47090 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47296 * 299.99533 * 9 7 5 13 13 S 1.81399 * 109.46746 * 119.99515 * 2 1 3 14 14 C 1.76204 * 103.00218 * 295.00302 * 13 2 1 15 15 N 1.31344 * 125.48950 * 359.97402 * 14 13 2 16 16 N 1.40423 * 106.94762 * 180.02562 * 15 14 13 17 17 H 0.97000 * 126.80243 * 179.97438 * 16 15 14 18 18 C 1.35176 * 106.38820 * 359.97438 * 16 15 14 19 19 C 1.47963 * 126.02514 * 179.97438 * 18 16 15 20 20 C 1.39945 * 120.55138 * 180.02562 * 19 18 16 21 21 C 1.38368 * 118.29467 * 179.72766 * 20 19 18 22 22 C 1.38330 * 119.30272 * 359.97438 * 21 20 19 23 23 N 1.31912 * 121.06886 * 0.02608 * 22 21 20 24 24 C 1.31719 * 121.86449 * 359.95320 * 23 22 21 25 25 N 1.31804 * 107.93939 * 0.24230 * 18 16 15 26 26 H 1.08992 * 109.47277 * 300.00501 * 1 2 3 27 27 H 1.09004 * 109.46317 * 60.00525 * 1 2 3 28 28 H 1.08998 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47268 * 295.00265 * 4 2 1 30 30 H 1.09001 * 109.47506 * 54.99950 * 4 2 1 31 31 H 0.97008 * 120.00135 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.84904 * 359.74609 * 20 19 18 33 33 H 1.08004 * 120.34575 * 180.02562 * 21 20 19 34 34 H 1.08005 * 119.47219 * 180.02562 * 22 21 20 35 35 H 1.08001 * 119.71016 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6151 -1.3125 6 1 4.0789 -0.0856 -0.5393 7 6 4.2305 -1.1929 -2.3580 8 7 3.5766 -1.8371 -3.2997 9 14 6.0921 -1.0605 -2.4368 10 1 6.6846 -1.6866 -1.2276 11 1 6.5871 -1.7597 -3.6499 12 1 6.4846 0.3705 -2.4962 13 16 2.1346 -0.8550 1.4812 14 6 1.5825 0.1848 2.7923 15 7 0.9009 1.2981 2.6471 16 7 0.6692 1.8071 3.9352 17 1 0.1912 2.6203 4.1613 18 6 1.2441 0.9391 4.7974 19 6 1.2592 1.0587 6.2721 20 6 1.8917 0.0889 7.0580 21 6 1.8825 0.2501 8.4322 22 6 1.2548 1.3543 8.9802 23 7 0.6664 2.2527 8.2142 24 6 0.6490 2.1433 6.9017 25 7 1.7938 -0.0293 4.0923 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7517 -1.7716 -1.2054 30 1 1.6056 -0.2619 -2.1369 31 1 4.0610 -2.2433 -4.0355 32 1 2.3750 -0.7634 6.6035 33 1 2.3610 -0.4782 9.0703 34 1 1.2463 1.4831 10.0525 35 1 0.1573 2.8997 6.3079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298130201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:25 Heat of formation + Delta-G solvation = 109.608219 kcal Electronic energy + Delta-G solvation = -19221.256868 eV Core-core repulsion = 16153.951971 eV Total energy + Delta-G solvation = -3067.304896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.00829 -40.31057 -34.61148 -33.66954 -32.91032 -32.13096 -31.98877 -29.97420 -27.46243 -24.77515 -24.17901 -23.31554 -22.67632 -21.35972 -20.30068 -18.69974 -17.34400 -16.51901 -16.36759 -16.14167 -15.87714 -15.65246 -14.75655 -14.48872 -14.26657 -14.19037 -13.48454 -13.01282 -12.75972 -12.57030 -12.00690 -11.77254 -11.59621 -11.16364 -11.09384 -10.75444 -10.60765 -10.52422 -10.45234 -10.20439 -10.06847 -9.98503 -9.52628 -9.37151 -9.16703 -9.06768 -8.38404 -7.08542 -6.03764 -4.06097 0.18582 0.79391 1.71521 1.75452 2.44948 2.81869 3.11722 3.35827 3.39249 3.43374 3.44919 3.73703 4.03259 4.34757 4.42187 4.45768 4.55892 4.84949 5.09585 5.16983 5.33729 5.64541 5.68107 5.69613 5.80061 5.84388 6.07138 6.10840 6.23647 6.45991 6.59324 6.70099 6.91239 7.40960 7.49068 7.55708 7.90871 7.93234 8.29078 8.98551 9.58399 11.07249 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.003227 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.638556 B = 8675.572931 C = 9262.404731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 H 0.086 0.914 4 C 0.039 3.961 5 C -0.524 4.524 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.277 1.277 13 S 0.044 5.956 14 C 0.214 3.786 15 N -0.309 5.309 16 N -0.479 5.479 17 H 0.437 0.563 18 C 0.323 3.677 19 C -0.076 4.076 20 C -0.023 4.023 21 C -0.170 4.170 22 C 0.111 3.889 23 N -0.481 5.481 24 C 0.122 3.878 25 N -0.504 5.504 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.162 0.838 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 5.898 21.866 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 H 0.104 0.896 4 C 0.001 3.999 5 C -0.562 4.562 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.202 1.202 13 S 0.272 5.728 14 C -0.174 4.174 15 N -0.143 5.143 16 N -0.198 5.198 17 H 0.283 0.717 18 C 0.044 3.956 19 C -0.081 4.081 20 C -0.051 4.051 21 C -0.190 4.190 22 C -0.046 4.046 23 N -0.189 5.189 24 C -0.038 4.038 25 N -0.234 5.234 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.179 0.821 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.403 5.489 21.513 23.108 hybrid contribution 0.413 1.131 -0.290 1.239 sum -5.991 6.620 21.224 23.025 Atomic orbital electron populations 1.22113 0.94503 1.02134 1.01781 1.23771 0.97281 1.02863 0.95736 0.89600 1.19059 0.96532 0.95729 0.88611 1.21224 0.91468 1.35002 1.08532 0.91844 1.24975 0.98558 0.95041 0.95505 1.69941 1.35800 1.35585 1.11982 0.86634 0.85554 0.78295 0.77488 1.19907 1.21337 1.20229 1.86303 1.67592 1.27363 0.91531 1.26897 0.97477 0.96186 0.96873 1.78527 1.24759 1.13520 0.97514 1.47937 1.44934 1.22539 1.04416 0.71737 1.21967 0.93889 0.88144 0.91589 1.18653 1.03477 0.98526 0.87476 1.21824 0.92843 0.97281 0.93117 1.22212 1.01444 0.99973 0.95368 1.22987 0.91733 0.89447 1.00481 1.67717 1.17261 1.28648 1.05271 1.22729 0.95044 0.94927 0.91126 1.70748 1.25533 1.25307 1.01842 0.92675 0.92009 0.92229 0.95309 0.94192 0.92810 0.82838 0.83688 0.82075 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.06 37.16 0.34 -2.28 16 2 C -0.07 -1.40 2.47 -26.73 -0.07 -1.46 16 3 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 4 C 0.04 0.98 4.45 -27.89 -0.12 0.86 16 5 C -0.52 -14.38 8.53 -34.44 -0.29 -14.67 16 6 H 0.06 1.72 7.60 -52.49 -0.40 1.33 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 S 0.04 0.90 20.90 -107.50 -2.25 -1.35 16 14 C 0.21 4.00 8.02 -91.10 -0.73 3.26 16 15 N -0.31 -5.31 10.67 30.10 0.32 -4.99 16 16 N -0.48 -6.18 7.34 32.24 0.24 -5.95 16 17 H 0.44 3.76 8.14 -182.35 -1.48 2.27 16 18 C 0.32 4.37 7.84 -155.49 -1.22 3.15 16 19 C -0.08 -0.79 5.89 -104.82 -0.62 -1.41 16 20 C -0.02 -0.21 9.82 -38.89 -0.38 -0.59 16 21 C -0.17 -1.13 10.10 -39.50 -0.40 -1.53 16 22 C 0.11 0.77 11.17 -17.48 -0.20 0.57 16 23 N -0.48 -4.35 10.35 -12.93 -0.13 -4.48 16 24 C 0.12 1.06 10.87 -17.14 -0.19 0.88 16 25 N -0.50 -8.61 10.94 -11.47 -0.13 -8.74 16 26 H 0.05 0.95 6.22 -51.93 -0.32 0.62 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.15 1.43 7.93 -52.48 -0.42 1.01 16 33 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.16 0.63 8.06 -52.48 -0.42 0.20 16 35 H 0.15 0.94 7.22 -52.49 -0.38 0.56 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -32.85 320.26 -10.47 -43.32 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -5.09 Total: -2.12 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.97 Total: -11.60 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 1.03 Total: -49.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.25 Total: -1.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.85 -10.47 -43.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298130201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.929 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds