Wall clock time and date at job start Tue Mar 31 2020 07:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47344 * 2 1 4 4 C 1.52991 * 109.47578 * 239.99617 * 2 1 3 5 5 C 1.50699 * 109.47631 * 175.00624 * 4 2 1 6 6 H 1.07998 * 119.99266 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00452 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99835 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99930 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47344 * 60.00007 * 9 7 5 11 11 H 1.48505 * 109.47090 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47296 * 299.99533 * 9 7 5 13 13 S 1.81399 * 109.46746 * 119.99515 * 2 1 3 14 14 C 1.76204 * 103.00218 * 295.00302 * 13 2 1 15 15 N 1.31344 * 125.48950 * 359.97402 * 14 13 2 16 16 N 1.40423 * 106.94762 * 180.02562 * 15 14 13 17 17 H 0.97000 * 126.80243 * 179.97438 * 16 15 14 18 18 C 1.35176 * 106.38820 * 359.97438 * 16 15 14 19 19 C 1.47963 * 126.02514 * 179.97438 * 18 16 15 20 20 C 1.39945 * 120.55138 * 180.02562 * 19 18 16 21 21 C 1.38368 * 118.29467 * 179.72766 * 20 19 18 22 22 C 1.38330 * 119.30272 * 359.97438 * 21 20 19 23 23 N 1.31912 * 121.06886 * 0.02608 * 22 21 20 24 24 C 1.31719 * 121.86449 * 359.95320 * 23 22 21 25 25 N 1.31804 * 107.93939 * 0.24230 * 18 16 15 26 26 H 1.08992 * 109.47277 * 300.00501 * 1 2 3 27 27 H 1.09004 * 109.46317 * 60.00525 * 1 2 3 28 28 H 1.08998 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47268 * 295.00265 * 4 2 1 30 30 H 1.09001 * 109.47506 * 54.99950 * 4 2 1 31 31 H 0.97008 * 120.00135 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.84904 * 359.74609 * 20 19 18 33 33 H 1.08004 * 120.34575 * 180.02562 * 21 20 19 34 34 H 1.08005 * 119.47219 * 180.02562 * 22 21 20 35 35 H 1.08001 * 119.71016 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6151 -1.3125 6 1 4.0789 -0.0856 -0.5393 7 6 4.2305 -1.1929 -2.3580 8 7 3.5766 -1.8371 -3.2997 9 14 6.0921 -1.0605 -2.4368 10 1 6.6846 -1.6866 -1.2276 11 1 6.5871 -1.7597 -3.6499 12 1 6.4846 0.3705 -2.4962 13 16 2.1346 -0.8550 1.4812 14 6 1.5825 0.1848 2.7923 15 7 0.9009 1.2981 2.6471 16 7 0.6692 1.8071 3.9352 17 1 0.1912 2.6203 4.1613 18 6 1.2441 0.9391 4.7974 19 6 1.2592 1.0587 6.2721 20 6 1.8917 0.0889 7.0580 21 6 1.8825 0.2501 8.4322 22 6 1.2548 1.3543 8.9802 23 7 0.6664 2.2527 8.2142 24 6 0.6490 2.1433 6.9017 25 7 1.7938 -0.0293 4.0923 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7517 -1.7716 -1.2054 30 1 1.6056 -0.2619 -2.1369 31 1 4.0610 -2.2433 -4.0355 32 1 2.3750 -0.7634 6.6035 33 1 2.3610 -0.4782 9.0703 34 1 1.2463 1.4831 10.0525 35 1 0.1573 2.8997 6.3079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298130201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:23 Heat of formation + Delta-G solvation = 89.672490 kcal Electronic energy + Delta-G solvation = -19222.121346 eV Core-core repulsion = 16153.951971 eV Total energy + Delta-G solvation = -3068.169375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.18365 -40.97732 -36.47430 -34.57747 -34.03348 -33.92823 -32.87842 -31.00804 -29.35591 -25.60501 -25.27770 -24.97053 -23.78623 -22.62031 -21.80468 -19.72598 -18.50352 -18.03525 -17.55181 -17.06281 -17.03187 -16.82873 -16.56126 -16.12457 -14.95719 -14.93738 -14.76176 -14.29751 -14.15825 -13.76970 -13.54372 -13.31241 -13.01540 -12.83753 -12.65487 -12.48988 -12.38556 -11.99813 -11.61245 -11.53982 -11.46790 -11.20868 -10.94020 -10.76012 -10.64026 -10.51948 -9.96202 -8.64522 -8.18719 -6.27482 -0.57555 0.17518 0.22662 0.64136 1.20470 1.42483 1.44974 1.52554 1.64842 1.75466 2.43351 2.77761 2.87628 3.16470 3.38258 3.56030 3.73947 3.96080 4.05382 4.11176 4.18171 4.38297 4.50826 4.63144 4.64673 4.87462 4.90744 4.97720 5.06627 5.13047 5.17889 5.39242 5.50542 5.55628 5.78311 5.96970 6.18283 6.70057 6.81060 6.83936 7.40573 8.92630 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028459 B = 0.003227 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.638556 B = 8675.572931 C = 9262.404731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.055 4.055 3 H 0.077 0.923 4 C 0.047 3.953 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.269 1.269 13 S 0.012 5.988 14 C 0.204 3.796 15 N -0.325 5.325 16 N -0.463 5.463 17 H 0.457 0.543 18 C 0.340 3.660 19 C -0.101 4.101 20 C -0.033 4.033 21 C -0.161 4.161 22 C 0.118 3.882 23 N -0.501 5.501 24 C 0.128 3.872 25 N -0.535 5.535 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.007 0.993 30 H 0.023 0.977 31 H 0.264 0.736 32 H 0.146 0.854 33 H 0.177 0.823 34 H 0.196 0.804 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 7.061 24.681 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 H 0.096 0.904 4 C 0.008 3.992 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.194 1.194 13 S 0.240 5.760 14 C -0.185 4.185 15 N -0.159 5.159 16 N -0.184 5.184 17 H 0.306 0.694 18 C 0.062 3.938 19 C -0.106 4.106 20 C -0.061 4.061 21 C -0.180 4.180 22 C -0.039 4.039 23 N -0.209 5.209 24 C -0.032 4.032 25 N -0.265 5.265 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.026 0.974 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.194 0.806 34 H 0.213 0.787 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.355 6.689 24.345 26.035 hybrid contribution 0.333 0.838 -0.901 1.275 sum -6.022 7.528 23.444 25.349 Atomic orbital electron populations 1.22022 0.92180 1.02595 1.02698 1.23473 0.99081 1.01491 0.94369 0.90412 1.18845 0.95528 0.94721 0.90086 1.21543 0.92846 1.34620 1.08373 0.92027 1.25804 1.03210 0.94763 0.95216 1.70054 1.37569 1.36593 1.12643 0.85636 0.80039 0.78612 0.77661 1.19370 1.20754 1.19394 1.86191 1.68951 1.28396 0.92492 1.26391 0.98709 0.96544 0.96889 1.78397 1.24639 1.13137 0.99773 1.47802 1.44532 1.23058 1.03008 0.69362 1.22402 0.91870 0.86747 0.92759 1.18689 1.06035 1.00320 0.85557 1.21954 0.92835 0.96917 0.94401 1.22523 1.00686 1.00417 0.94388 1.23630 0.89816 0.88504 1.01962 1.67825 1.18202 1.29590 1.05282 1.23017 0.94168 0.94564 0.91409 1.70675 1.27302 1.27215 1.01350 0.91725 0.90966 0.92012 0.97418 0.95905 0.92688 0.83660 0.80561 0.78743 0.80811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.06 71.98 0.65 -4.22 16 2 C -0.05 -2.33 2.47 30.59 0.08 -2.26 16 3 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 4 C 0.05 2.42 4.45 29.84 0.13 2.55 16 5 C -0.54 -30.05 8.53 25.60 0.22 -29.83 16 6 H 0.06 3.41 7.60 -2.91 -0.02 3.39 16 7 C 0.01 0.48 5.46 84.66 0.46 0.95 16 8 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 9 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 S 0.01 0.50 20.90 -56.49 -1.18 -0.68 16 14 C 0.20 7.67 8.02 180.52 1.45 9.11 16 15 N -0.32 -10.97 10.67 -58.68 -0.63 -11.60 16 16 N -0.46 -11.30 7.34 -51.92 -0.38 -11.68 16 17 H 0.46 6.90 8.14 -213.11 -1.73 5.16 16 18 C 0.34 8.87 7.84 136.87 1.07 9.94 16 19 C -0.10 -1.92 5.89 -19.99 -0.12 -2.04 16 20 C -0.03 -0.55 9.82 22.71 0.22 -0.33 16 21 C -0.16 -1.62 10.10 22.32 0.23 -1.40 16 22 C 0.12 1.20 11.17 84.70 0.95 2.15 16 23 N -0.50 -7.54 10.35 -194.81 -2.02 -9.56 16 24 C 0.13 1.93 10.87 85.00 0.92 2.85 16 25 N -0.53 -18.23 10.94 -190.20 -2.08 -20.31 16 26 H 0.06 2.19 6.22 -2.39 -0.01 2.18 16 27 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 32 H 0.15 2.62 7.93 -2.91 -0.02 2.60 16 33 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 34 H 0.20 0.60 8.06 -2.91 -0.02 0.57 16 35 H 0.17 1.65 7.22 -2.91 -0.02 1.63 16 Total: -1.00 -71.91 320.26 1.68 -70.22 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -0.61 Total: 4.78 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 6.26 Total: -12.52 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.82 Total: -108.43 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -1.18 Total: -0.68 kcal Total: -71.91 1.68 -70.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298130201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.896 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds