Wall clock time and date at job start Tue Mar 31 2020 08:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99827 * 2 1 4 4 H 1.48503 * 109.47171 * 269.99765 * 3 2 1 5 5 H 1.48502 * 109.47165 * 29.99916 * 3 2 1 6 6 H 1.48502 * 109.47195 * 150.00102 * 3 2 1 7 7 C 1.38942 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00296 * 198.00510 * 7 2 1 9 9 N 1.37102 * 120.00183 * 18.00264 * 7 2 1 10 10 C 1.34773 * 119.99662 * 44.47439 * 9 7 2 11 11 O 1.21289 * 120.00337 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99584 * 180.02562 * 10 9 7 13 13 C 1.50704 * 109.46903 * 180.02562 * 12 10 9 14 14 C 1.38230 * 120.00471 * 89.99738 * 13 12 10 15 15 C 1.38234 * 120.00442 * 180.02562 * 14 13 12 16 16 C 1.38242 * 119.99684 * 0.02562 * 15 14 13 17 17 N 1.48017 * 119.99728 * 179.97438 * 16 15 14 18 18 O 1.21800 * 120.00190 * 359.97438 * 17 16 15 19 19 O 1.21800 * 119.99772 * 179.72197 * 17 16 15 20 20 C 1.38226 * 119.99895 * 0.24924 * 16 15 14 21 21 C 1.38238 * 120.00392 * 359.49493 * 20 16 15 22 22 C 1.46498 * 120.00072 * 224.47827 * 9 7 2 23 23 C 1.53001 * 117.49771 * 3.20315 * 22 9 7 24 24 C 1.53004 * 117.49652 * 294.54306 * 22 9 7 25 25 H 0.97004 * 120.00037 * 354.96296 * 1 2 3 26 26 H 1.08997 * 109.47566 * 59.99995 * 12 10 9 27 27 H 1.09004 * 109.47339 * 299.99547 * 12 10 9 28 28 H 1.08009 * 119.99736 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.00408 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.00238 * 179.73166 * 20 16 15 31 31 H 1.07994 * 120.00365 * 180.23703 * 21 20 16 32 32 H 1.09002 * 115.55356 * 148.87637 * 22 9 7 33 33 H 1.08996 * 117.50141 * 359.97438 * 23 22 9 34 34 H 1.09005 * 117.49945 * 145.02279 * 23 22 9 35 35 H 1.09004 * 117.49814 * 214.97607 * 24 22 9 36 36 H 1.08999 * 117.50174 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0491 -1.2261 0.2896 9 7 1.3737 -2.3617 -0.3659 10 6 0.5768 -2.3785 -1.4526 11 8 0.4218 -1.3689 -2.1067 12 6 -0.1218 -3.6518 -1.8551 13 6 -0.9440 -3.4038 -3.0935 14 6 -0.3839 -3.5886 -4.3436 15 6 -1.1379 -3.3606 -5.4795 16 6 -2.4521 -2.9472 -5.3652 17 7 -3.2594 -2.7025 -6.5815 18 8 -2.7656 -2.8649 -7.6830 19 8 -4.4188 -2.3431 -6.4808 20 6 -3.0105 -2.7569 -4.1152 21 6 -2.2581 -2.9900 -2.9792 22 6 1.5613 -3.5813 0.4239 23 6 2.4173 -3.4796 1.6879 24 6 2.9615 -4.1975 0.4502 25 1 -0.4850 0.8368 0.0738 26 1 -0.7735 -3.9802 -1.0455 27 1 0.6198 -4.4238 -2.0604 28 1 0.6430 -3.9112 -4.4329 29 1 -0.7001 -3.5046 -6.4562 30 1 -4.0359 -2.4297 -4.0258 31 1 -2.6955 -2.8450 -2.0025 32 1 0.7110 -4.2629 0.4453 33 1 2.8413 -2.5056 1.9317 34 1 2.1304 -4.0947 2.5409 35 1 3.0323 -5.2845 0.4895 36 1 3.7430 -3.6958 -0.1204 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299187147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:13 Heat of formation + Delta-G solvation = 26.097984 kcal Electronic energy + Delta-G solvation = -22595.765103 eV Core-core repulsion = 19049.793309 eV Total energy + Delta-G solvation = -3545.971794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -42.01831 -39.65323 -38.44331 -36.42569 -36.22105 -33.36697 -32.61624 -31.25526 -31.07127 -28.75140 -25.82740 -24.38798 -23.03692 -21.95490 -21.70588 -21.22510 -19.38799 -19.18606 -18.53224 -17.38858 -16.65047 -16.21037 -15.68249 -15.50784 -14.80385 -14.61459 -14.35012 -13.85869 -13.79081 -13.49883 -13.15105 -12.68034 -12.12418 -11.84913 -11.62695 -11.49098 -11.26659 -11.18598 -11.03706 -11.02837 -10.99082 -10.94918 -10.64745 -10.28273 -10.11055 -9.88302 -9.24530 -9.21812 -8.81441 -8.20287 -7.18930 -6.24985 -4.01146 0.02172 1.14790 1.54041 1.58805 3.22563 3.29382 3.33358 3.44514 3.91306 4.14974 4.51087 4.59280 4.62540 4.64156 4.84700 5.02370 5.14510 5.16469 5.37960 5.43865 5.50817 5.60061 5.64948 5.80812 5.83049 5.88306 5.94163 6.01544 6.10004 6.31468 6.38702 6.46689 6.59911 6.68781 6.81193 7.49635 7.79606 8.12659 8.90652 8.98140 9.50416 10.09928 10.84056 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.004493 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.638399 B = 6230.595310 C = 7147.506665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.350 4.350 8 H 0.079 0.921 9 N -0.424 5.424 10 C 0.485 3.515 11 O -0.526 6.526 12 C -0.113 4.113 13 C 0.017 3.983 14 C -0.109 4.109 15 C -0.054 4.054 16 C -0.059 4.059 17 N 0.036 4.964 18 O -0.173 6.173 19 O -0.172 6.172 20 C -0.052 4.052 21 C -0.102 4.102 22 C 0.071 3.929 23 C -0.172 4.172 24 C -0.207 4.207 25 H 0.265 0.735 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 -10.401 -2.034 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.096 0.904 9 N -0.145 5.145 10 C 0.272 3.728 11 O -0.403 6.403 12 C -0.153 4.153 13 C 0.016 3.984 14 C -0.128 4.128 15 C -0.073 4.073 16 C -0.142 4.142 17 N 0.553 4.447 18 O -0.387 6.387 19 O -0.386 6.386 20 C -0.072 4.072 21 C -0.121 4.121 22 C -0.035 4.035 23 C -0.210 4.210 24 C -0.246 4.246 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.021 -9.833 -1.872 10.062 hybrid contribution 0.147 0.900 -0.103 0.918 sum -0.874 -8.933 -1.975 9.190 Atomic orbital electron populations 1.69796 1.06572 1.27584 1.42668 1.25229 0.94850 0.99426 0.94058 0.86209 0.79339 0.82079 0.78408 1.20301 1.21197 1.19804 1.18858 0.94490 0.83657 1.50605 0.90369 1.42729 1.43921 1.07023 1.20868 1.19445 0.83437 0.88079 0.81878 1.90584 1.62420 1.34411 1.52931 1.20943 0.99244 1.00196 0.94929 1.20013 0.93279 0.90105 0.95033 1.21042 1.00252 1.00932 0.90544 1.20931 0.90656 0.94705 1.01041 1.21024 0.93568 1.15092 0.84563 1.43664 1.01039 0.97318 1.02728 1.94499 1.74871 1.55822 1.13523 1.94507 1.01502 1.48895 1.93734 1.20959 1.01421 0.95220 0.89565 1.21095 0.93752 0.98739 0.98475 1.21739 0.92636 0.91587 0.97556 1.23078 1.04295 1.02537 0.91073 1.23337 0.99600 0.98523 1.03151 0.92488 0.88810 0.88781 0.83854 0.83387 0.83357 0.83678 0.87965 0.87433 0.89716 0.89711 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.40 11.74 55.50 0.65 -22.75 16 2 C 0.08 2.01 4.39 -17.47 -0.08 1.94 16 3 Si 0.91 21.20 29.59 -169.99 -5.03 16.17 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.35 -8.94 7.91 -14.93 -0.12 -9.06 16 8 H 0.08 1.96 7.26 -52.49 -0.38 1.57 16 9 N -0.42 -9.65 2.83 -107.73 -0.31 -9.95 16 10 C 0.48 10.93 6.96 -10.99 -0.08 10.86 16 11 O -0.53 -14.24 13.81 5.55 0.08 -14.16 16 12 C -0.11 -1.80 4.45 -29.03 -0.13 -1.93 16 13 C 0.02 0.26 4.37 -104.62 -0.46 -0.20 16 14 C -0.11 -1.54 9.70 -39.59 -0.38 -1.92 16 15 C -0.05 -0.76 9.56 -39.58 -0.38 -1.14 16 16 C -0.06 -0.91 6.85 -79.95 -0.55 -1.46 16 17 N 0.04 0.59 4.45 33.96 0.15 0.74 16 18 O -0.17 -2.88 18.45 -29.46 -0.54 -3.43 16 19 O -0.17 -2.90 18.45 -29.46 -0.54 -3.44 16 20 C -0.05 -0.76 9.55 -39.59 -0.38 -1.14 16 21 C -0.10 -1.53 9.70 -39.58 -0.38 -1.91 16 22 C 0.07 1.26 5.87 -67.93 -0.40 0.86 16 23 C -0.17 -2.81 9.80 -26.69 -0.26 -3.07 16 24 C -0.21 -3.13 10.36 -26.69 -0.28 -3.41 16 25 H 0.27 7.22 8.32 -40.82 -0.34 6.88 16 26 H 0.09 1.33 7.51 -51.93 -0.39 0.94 16 27 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 28 H 0.14 1.72 8.06 -52.48 -0.42 1.29 16 29 H 0.15 1.78 7.61 -52.49 -0.40 1.38 16 30 H 0.15 1.90 7.61 -52.49 -0.40 1.50 16 31 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.10 1.55 6.96 -51.93 -0.36 1.19 16 33 H 0.11 1.99 6.73 -51.93 -0.35 1.64 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -31.90 320.73 -8.52 -40.43 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.95 Total: 3.15 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -3.87 Total: -11.59 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.50 Total: -31.96 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.01 Total: -21.03 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.90 -8.52 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299187147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.524 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds