Wall clock time and date at job start Tue Mar 31 2020 08:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99827 * 2 1 4 4 H 1.48503 * 109.47171 * 269.99765 * 3 2 1 5 5 H 1.48502 * 109.47165 * 29.99916 * 3 2 1 6 6 H 1.48502 * 109.47195 * 150.00102 * 3 2 1 7 7 C 1.38942 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00296 * 198.00510 * 7 2 1 9 9 N 1.37102 * 120.00183 * 18.00264 * 7 2 1 10 10 C 1.34773 * 119.99662 * 44.47439 * 9 7 2 11 11 O 1.21289 * 120.00337 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99584 * 180.02562 * 10 9 7 13 13 C 1.50704 * 109.46903 * 180.02562 * 12 10 9 14 14 C 1.38230 * 120.00471 * 89.99738 * 13 12 10 15 15 C 1.38234 * 120.00442 * 180.02562 * 14 13 12 16 16 C 1.38242 * 119.99684 * 0.02562 * 15 14 13 17 17 N 1.48017 * 119.99728 * 179.97438 * 16 15 14 18 18 O 1.21800 * 120.00190 * 359.97438 * 17 16 15 19 19 O 1.21800 * 119.99772 * 179.72197 * 17 16 15 20 20 C 1.38226 * 119.99895 * 0.24924 * 16 15 14 21 21 C 1.38238 * 120.00392 * 359.49493 * 20 16 15 22 22 C 1.46498 * 120.00072 * 224.47827 * 9 7 2 23 23 C 1.53001 * 117.49771 * 3.20315 * 22 9 7 24 24 C 1.53004 * 117.49652 * 294.54306 * 22 9 7 25 25 H 0.97004 * 120.00037 * 354.96296 * 1 2 3 26 26 H 1.08997 * 109.47566 * 59.99995 * 12 10 9 27 27 H 1.09004 * 109.47339 * 299.99547 * 12 10 9 28 28 H 1.08009 * 119.99736 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.00408 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.00238 * 179.73166 * 20 16 15 31 31 H 1.07994 * 120.00365 * 180.23703 * 21 20 16 32 32 H 1.09002 * 115.55356 * 148.87637 * 22 9 7 33 33 H 1.08996 * 117.50141 * 359.97438 * 23 22 9 34 34 H 1.09005 * 117.49945 * 145.02279 * 23 22 9 35 35 H 1.09004 * 117.49814 * 214.97607 * 24 22 9 36 36 H 1.08999 * 117.50174 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0491 -1.2261 0.2896 9 7 1.3737 -2.3617 -0.3659 10 6 0.5768 -2.3785 -1.4526 11 8 0.4218 -1.3689 -2.1067 12 6 -0.1218 -3.6518 -1.8551 13 6 -0.9440 -3.4038 -3.0935 14 6 -0.3839 -3.5886 -4.3436 15 6 -1.1379 -3.3606 -5.4795 16 6 -2.4521 -2.9472 -5.3652 17 7 -3.2594 -2.7025 -6.5815 18 8 -2.7656 -2.8649 -7.6830 19 8 -4.4188 -2.3431 -6.4808 20 6 -3.0105 -2.7569 -4.1152 21 6 -2.2581 -2.9900 -2.9792 22 6 1.5613 -3.5813 0.4239 23 6 2.4173 -3.4796 1.6879 24 6 2.9615 -4.1975 0.4502 25 1 -0.4850 0.8368 0.0738 26 1 -0.7735 -3.9802 -1.0455 27 1 0.6198 -4.4238 -2.0604 28 1 0.6430 -3.9112 -4.4329 29 1 -0.7001 -3.5046 -6.4562 30 1 -4.0359 -2.4297 -4.0258 31 1 -2.6955 -2.8450 -2.0025 32 1 0.7110 -4.2629 0.4453 33 1 2.8413 -2.5056 1.9317 34 1 2.1304 -4.0947 2.5409 35 1 3.0323 -5.2845 0.4895 36 1 3.7430 -3.6958 -0.1204 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299187147.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:07 Heat of formation + Delta-G solvation = 8.952072 kcal Electronic energy + Delta-G solvation = -22596.508606 eV Core-core repulsion = 19049.793309 eV Total energy + Delta-G solvation = -3546.715297 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 10.84 seconds Orbital eigenvalues (eV) -43.28017 -40.96240 -39.89922 -37.72061 -37.71236 -34.96508 -34.10927 -32.80644 -32.36836 -30.10679 -27.38990 -25.93167 -24.15639 -23.28614 -22.94880 -22.62965 -21.02574 -20.38432 -19.80660 -18.66078 -18.32305 -17.79592 -17.01701 -16.74224 -16.49976 -15.90140 -15.61248 -15.50804 -15.08807 -14.76968 -14.57831 -13.95596 -13.76326 -13.28269 -12.98620 -12.92891 -12.77876 -12.76614 -12.60433 -12.33855 -12.28239 -12.25627 -12.16018 -12.06739 -11.63766 -11.17713 -10.76748 -10.43437 -10.32620 -9.90018 -8.96093 -8.22028 -5.98566 -1.21748 0.04300 0.30983 0.36912 1.34262 1.42048 1.46036 2.20006 2.32100 2.41144 3.11354 3.16062 3.37215 3.43008 3.52162 3.59663 3.90588 4.03466 4.12975 4.20112 4.29620 4.32835 4.45594 4.57346 4.65540 4.72545 4.79920 4.83490 4.94818 5.09932 5.16496 5.30831 5.34242 5.48291 5.52298 5.53660 6.19916 6.49874 7.04121 7.19058 7.71567 8.35855 8.85870 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.004493 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.638399 B = 6230.595310 C = 7147.506665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.028 3.972 3 Si 0.960 3.040 4 H -0.295 1.295 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.352 4.352 8 H 0.075 0.925 9 N -0.443 5.443 10 C 0.473 3.527 11 O -0.583 6.583 12 C -0.097 4.097 13 C 0.003 3.997 14 C -0.108 4.108 15 C -0.052 4.052 16 C -0.072 4.072 17 N 0.036 4.964 18 O -0.176 6.176 19 O -0.188 6.188 20 C -0.055 4.055 21 C -0.110 4.110 22 C 0.046 3.954 23 C -0.177 4.177 24 C -0.179 4.179 25 H 0.258 0.742 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.160 0.840 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 -12.674 -1.633 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.179 4.179 3 Si 0.786 3.214 4 H -0.222 1.222 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.479 4.479 8 H 0.093 0.907 9 N -0.164 5.164 10 C 0.262 3.738 11 O -0.464 6.464 12 C -0.137 4.137 13 C 0.002 3.998 14 C -0.126 4.126 15 C -0.071 4.071 16 C -0.156 4.156 17 N 0.550 4.450 18 O -0.391 6.391 19 O -0.399 6.399 20 C -0.074 4.074 21 C -0.128 4.128 22 C -0.058 4.058 23 C -0.215 4.215 24 C -0.218 4.218 25 H 0.067 0.933 26 H 0.132 0.868 27 H 0.147 0.853 28 H 0.184 0.816 29 H 0.185 0.815 30 H 0.178 0.822 31 H 0.169 0.831 32 H 0.152 0.848 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.121 -12.135 -1.434 12.220 hybrid contribution -0.038 1.525 -0.226 1.542 sum -0.159 -10.611 -1.660 10.741 Atomic orbital electron populations 1.69887 1.07661 1.27385 1.45353 1.25894 0.95445 1.02092 0.94459 0.85464 0.79257 0.79358 0.77333 1.22161 1.20924 1.17880 1.19023 0.94559 0.85154 1.49193 0.90725 1.42981 1.43757 1.07816 1.21839 1.20460 0.82737 0.89542 0.81041 1.90547 1.64161 1.37070 1.54609 1.20821 0.99856 0.97330 0.95694 1.20153 0.93462 0.90700 0.95512 1.21323 1.01174 1.00172 0.89924 1.21199 0.90051 0.93804 1.02083 1.21243 0.94134 1.15966 0.84212 1.43845 1.01057 0.97063 1.03043 1.94481 1.74799 1.55776 1.14002 1.94500 1.01966 1.49622 1.93850 1.21114 1.02073 0.94952 0.89300 1.21246 0.94008 0.98722 0.98842 1.22088 0.95171 0.90455 0.98116 1.23120 1.04042 1.02029 0.92266 1.23344 0.96863 1.00509 1.01058 0.93319 0.86755 0.85317 0.81565 0.81474 0.82226 0.83114 0.84818 0.90470 0.86608 0.85552 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.95 11.74 21.66 0.25 -49.69 16 2 C 0.03 1.50 4.39 84.92 0.37 1.88 16 3 Si 0.96 44.36 29.59 68.60 2.03 46.39 16 4 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.35 -18.10 7.91 84.04 0.67 -17.44 16 8 H 0.08 3.77 7.26 -2.91 -0.02 3.75 16 9 N -0.44 -19.74 2.83 -613.13 -1.74 -21.47 16 10 C 0.47 20.90 6.96 87.66 0.61 21.51 16 11 O -0.58 -31.85 13.81 -3.06 -0.04 -31.90 16 12 C -0.10 -2.83 4.45 29.10 0.13 -2.70 16 13 C 0.00 0.07 4.37 -19.86 -0.09 -0.01 16 14 C -0.11 -2.78 9.70 22.27 0.22 -2.56 16 15 C -0.05 -1.37 9.56 22.27 0.21 -1.16 16 16 C -0.07 -2.15 6.85 36.37 0.25 -1.90 16 17 N 0.04 1.15 4.45 -46.47 -0.21 0.94 16 18 O -0.18 -5.71 18.45 18.89 0.35 -5.36 16 19 O -0.19 -6.29 18.45 18.89 0.35 -5.94 16 20 C -0.06 -1.57 9.55 22.27 0.21 -1.36 16 21 C -0.11 -3.16 9.70 22.27 0.22 -2.95 16 22 C 0.05 1.51 5.87 44.99 0.26 1.78 16 23 C -0.18 -5.34 9.80 30.62 0.30 -5.04 16 24 C -0.18 -4.77 10.36 30.62 0.32 -4.45 16 25 H 0.26 14.52 8.32 -92.70 -0.77 13.75 16 26 H 0.11 2.86 7.51 -2.39 -0.02 2.84 16 27 H 0.13 2.83 8.05 -2.39 -0.02 2.81 16 28 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 29 H 0.17 3.65 7.61 -2.91 -0.02 3.62 16 30 H 0.16 4.02 7.61 -2.91 -0.02 4.00 16 31 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 32 H 0.13 3.47 6.96 -2.39 -0.02 3.45 16 33 H 0.08 2.81 6.73 -2.39 -0.02 2.80 16 34 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -71.30 320.73 5.78 -65.51 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.11 Total: 15.92 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.68 Total: -14.40 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -1.69 Total: -70.22 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: 0.65 Total: -43.20 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.30 5.78 -65.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299187147.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.466 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.84 seconds