Wall clock time and date at job start Tue Mar 31 2020 08:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46915 * 2 1 4 4 C 1.36932 * 120.00035 * 96.01692 * 3 2 1 5 5 H 1.08005 * 119.99803 * 169.81374 * 4 3 2 6 6 C 1.38808 * 120.00245 * 349.80771 * 4 3 2 7 7 N 1.31623 * 119.99950 * 326.98171 * 6 4 3 8 8 Si 1.86796 * 120.00226 * 146.97967 * 6 4 3 9 9 H 1.48506 * 109.46918 * 94.98645 * 8 6 4 10 10 H 1.48502 * 109.47303 * 214.98356 * 8 6 4 11 11 H 1.48497 * 109.47205 * 334.98627 * 8 6 4 12 12 C 1.46501 * 119.99771 * 276.00851 * 3 2 1 13 13 C 1.50699 * 109.47374 * 264.82670 * 12 3 2 14 14 C 1.36121 * 120.11241 * 261.37203 * 13 12 3 15 15 C 1.39276 * 121.08609 * 179.71957 * 14 13 12 16 16 C 1.36302 * 120.84943 * 0.26308 * 15 14 13 17 17 Cl 1.73606 * 120.20457 * 179.97438 * 16 15 14 18 18 C 1.40494 * 119.58989 * 0.02562 * 16 15 14 19 19 C 1.40733 * 121.38548 * 180.02562 * 18 16 15 20 20 C 1.36598 * 118.15706 * 179.97438 * 19 18 16 21 21 C 1.39323 * 119.93357 * 359.97438 * 20 19 18 22 22 N 1.31097 * 121.75360 * 0.02562 * 21 20 19 23 23 C 1.33693 * 121.31144 * 359.97438 * 22 21 20 24 24 H 1.09004 * 109.47217 * 305.75480 * 1 2 3 25 25 H 1.09000 * 109.46859 * 65.75211 * 1 2 3 26 26 H 1.09000 * 109.47046 * 185.75214 * 1 2 3 27 27 H 1.08994 * 109.47207 * 239.99665 * 2 1 3 28 28 H 1.09001 * 109.47011 * 119.99517 * 2 1 3 29 29 H 0.97004 * 119.99979 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46667 * 144.82592 * 12 3 2 31 31 H 1.09001 * 109.47056 * 24.82744 * 12 3 2 32 32 H 1.07995 * 119.45696 * 0.02562 * 14 13 12 33 33 H 1.07994 * 119.57157 * 180.27570 * 15 14 13 34 34 H 1.08001 * 120.92501 * 359.95308 * 19 18 16 35 35 H 1.07996 * 120.03594 * 180.02562 * 20 19 18 36 36 H 1.08002 * 119.12361 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3637 1.9854 1.1793 5 1 2.8752 2.9366 1.1693 6 6 2.0563 1.3754 2.3877 7 7 0.9630 0.6511 2.4999 8 14 3.1941 1.5824 3.8546 9 1 2.7105 2.7019 4.7021 10 1 3.2082 0.3291 4.6510 11 1 4.5682 1.8809 3.3770 12 6 2.1372 2.1161 -1.2618 13 6 3.5480 2.0015 -1.7789 14 6 4.4376 3.0095 -1.5657 15 6 5.7479 2.9224 -2.0296 16 6 6.1749 1.8249 -2.7159 17 17 7.8118 1.7342 -3.2871 18 6 5.2817 0.7680 -2.9593 19 6 5.6824 -0.3828 -3.6633 20 6 4.7601 -1.3705 -3.8621 21 6 3.4646 -1.2210 -3.3718 22 7 3.0946 -0.1476 -2.7163 23 6 3.9483 0.8556 -2.4878 24 1 -0.3634 0.6005 0.8340 25 1 -0.3633 0.4221 -0.9370 26 1 -0.3633 -1.0225 0.1030 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.7484 0.2245 3.3443 30 1 1.8955 3.1659 -1.0950 31 1 1.4468 1.6961 -1.9933 32 1 4.1234 3.8892 -1.0237 33 1 6.4345 3.7348 -1.8428 34 1 6.6911 -0.4821 -4.0364 35 1 5.0350 -2.2669 -4.3981 36 1 2.7460 -2.0103 -3.5361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299555502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:00 Heat of formation + Delta-G solvation = 78.015301 kcal Electronic energy + Delta-G solvation = -20852.446217 eV Core-core repulsion = 17749.434891 eV Total energy + Delta-G solvation = -3103.011326 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.63528 -37.25372 -36.62933 -35.60548 -33.25917 -31.41416 -30.39984 -30.29676 -28.58493 -25.68213 -23.99610 -23.53611 -22.99598 -21.22457 -19.79771 -18.08089 -16.98922 -16.81376 -16.32871 -15.06099 -14.72735 -14.31784 -14.14955 -14.07835 -13.55027 -13.39504 -13.02650 -12.92909 -12.54077 -12.18340 -11.87682 -11.60529 -11.44905 -11.07093 -10.92500 -10.78871 -10.70373 -10.59203 -10.44571 -10.15099 -9.98069 -9.69847 -9.41759 -8.97367 -8.58953 -8.33873 -7.79199 -6.88784 -5.83691 -3.01924 0.55673 1.02343 2.14077 2.18733 3.13013 3.38557 3.48333 3.52879 4.28661 4.53009 4.56748 4.83657 4.87823 4.97047 5.11979 5.25158 5.39798 5.50571 5.62661 5.67970 5.91493 5.98012 6.08565 6.22035 6.29345 6.47855 6.62620 6.68091 6.73827 6.95354 7.01342 7.07921 7.22532 7.23085 7.64354 7.77210 8.17316 8.19920 8.31403 9.21485 9.85880 10.33166 11.19783 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.005981 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.624679 B = 4680.506763 C = 5609.881112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.163 3.837 3 N -0.575 5.575 4 C -0.261 4.261 5 H 0.073 0.927 6 C 0.010 3.990 7 N -0.874 5.874 8 Si 0.876 3.124 9 H -0.289 1.289 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.189 3.811 13 C -0.040 4.040 14 C -0.106 4.106 15 C -0.085 4.085 16 C -0.045 4.045 17 Cl -0.080 7.080 18 C -0.092 4.092 19 C -0.068 4.068 20 C -0.173 4.173 21 C 0.117 3.883 22 N -0.443 5.443 23 C 0.147 3.853 24 H 0.092 0.908 25 H 0.012 0.988 26 H 0.019 0.981 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.252 0.748 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.209 -0.793 -13.120 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 N -0.293 5.293 4 C -0.389 4.389 5 H 0.091 0.909 6 C -0.189 4.189 7 N -0.517 5.517 8 Si 0.704 3.296 9 H -0.216 1.216 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.061 3.939 13 C -0.045 4.045 14 C -0.128 4.128 15 C -0.104 4.104 16 C -0.073 4.073 17 Cl -0.051 7.051 18 C -0.095 4.095 19 C -0.094 4.094 20 C -0.193 4.193 21 C -0.056 4.056 22 N -0.150 5.150 23 C 0.025 3.975 24 H 0.111 0.889 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.349 -0.740 -12.603 14.608 hybrid contribution 1.862 -0.202 0.631 1.976 sum 9.211 -0.943 -11.972 15.135 Atomic orbital electron populations 1.22269 0.99150 0.99063 1.00470 1.20745 0.92499 0.84245 0.98715 1.44106 1.73821 1.10914 1.00410 1.19162 1.31513 1.04910 0.83324 0.90908 1.24615 0.96805 1.00521 0.96958 1.70257 1.20288 1.36208 1.24899 0.86682 0.82512 0.77098 0.83276 1.21641 1.21599 1.20620 1.19683 0.88655 0.96629 0.88948 1.21100 1.01737 0.90438 0.91232 1.20674 0.91880 0.99921 1.00301 1.20828 0.96659 0.96571 0.96347 1.20394 0.85436 0.97009 1.04510 1.98323 1.20251 1.98318 1.88233 1.18559 0.94446 0.95136 1.01369 1.21386 0.99950 0.92300 0.95764 1.21823 0.94977 1.00106 1.02437 1.22965 0.94565 0.95444 0.92615 1.68135 1.35300 1.00326 1.11238 1.18693 0.88146 0.94091 0.96605 0.88900 0.96918 0.96160 0.94539 0.92144 0.93729 0.92787 0.92023 0.84682 0.85155 0.84720 0.84925 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.69 37.16 0.36 -3.16 16 2 C 0.16 3.96 5.58 -4.04 -0.02 3.94 16 3 N -0.57 -14.02 2.53 -174.61 -0.44 -14.46 16 4 C -0.26 -6.94 9.60 -15.06 -0.14 -7.08 16 5 H 0.07 1.89 8.01 -52.48 -0.42 1.47 16 6 C 0.01 0.28 4.61 -17.43 -0.08 0.20 16 7 N -0.87 -24.39 9.13 55.49 0.51 -23.89 16 8 Si 0.88 21.41 29.66 -169.99 -5.04 16.37 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.19 3.88 5.52 -5.19 -0.03 3.85 16 13 C -0.04 -0.75 5.44 -104.51 -0.57 -1.32 16 14 C -0.11 -1.76 9.56 -39.96 -0.38 -2.14 16 15 C -0.09 -1.26 9.73 -39.89 -0.39 -1.65 16 16 C -0.05 -0.69 6.32 -39.43 -0.25 -0.94 16 17 Cl -0.08 -1.02 27.56 -51.86 -1.43 -2.45 16 18 C -0.09 -1.50 5.74 -106.78 -0.61 -2.11 16 19 C -0.07 -0.92 9.53 -39.23 -0.37 -1.29 16 20 C -0.17 -2.11 10.03 -39.77 -0.40 -2.51 16 21 C 0.12 1.64 11.15 -17.46 -0.19 1.45 16 22 N -0.44 -7.87 7.38 -10.97 -0.08 -7.95 16 23 C 0.15 2.69 6.58 -84.86 -0.56 2.13 16 24 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.83 5.79 -51.93 -0.30 0.53 16 28 H 0.06 1.65 6.26 -51.93 -0.33 1.32 16 29 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 31 H 0.06 1.25 7.71 -51.93 -0.40 0.85 16 32 H 0.14 2.05 8.01 -52.49 -0.42 1.63 16 33 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.14 1.55 7.06 -52.49 -0.37 1.18 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 312.35 15.07 4.71 4.71 Total: -1.00 -29.27 312.35 -9.64 -38.91 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.22 Total: -0.61 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.64 Total: -10.64 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.02 Total: -46.29 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.04 Total: 16.37 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.43 Total: -2.45 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.27 -9.64 -38.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299555502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.925 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds