Wall clock time and date at job start Tue Mar 31 2020 08:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46915 * 2 1 4 4 C 1.36932 * 120.00035 * 96.01692 * 3 2 1 5 5 H 1.08005 * 119.99803 * 169.81374 * 4 3 2 6 6 C 1.38808 * 120.00245 * 349.80771 * 4 3 2 7 7 N 1.31623 * 119.99950 * 326.98171 * 6 4 3 8 8 Si 1.86796 * 120.00226 * 146.97967 * 6 4 3 9 9 H 1.48506 * 109.46918 * 94.98645 * 8 6 4 10 10 H 1.48502 * 109.47303 * 214.98356 * 8 6 4 11 11 H 1.48497 * 109.47205 * 334.98627 * 8 6 4 12 12 C 1.46501 * 119.99771 * 276.00851 * 3 2 1 13 13 C 1.50699 * 109.47374 * 264.82670 * 12 3 2 14 14 C 1.36121 * 120.11241 * 261.37203 * 13 12 3 15 15 C 1.39276 * 121.08609 * 179.71957 * 14 13 12 16 16 C 1.36302 * 120.84943 * 0.26308 * 15 14 13 17 17 Cl 1.73606 * 120.20457 * 179.97438 * 16 15 14 18 18 C 1.40494 * 119.58989 * 0.02562 * 16 15 14 19 19 C 1.40733 * 121.38548 * 180.02562 * 18 16 15 20 20 C 1.36598 * 118.15706 * 179.97438 * 19 18 16 21 21 C 1.39323 * 119.93357 * 359.97438 * 20 19 18 22 22 N 1.31097 * 121.75360 * 0.02562 * 21 20 19 23 23 C 1.33693 * 121.31144 * 359.97438 * 22 21 20 24 24 H 1.09004 * 109.47217 * 305.75480 * 1 2 3 25 25 H 1.09000 * 109.46859 * 65.75211 * 1 2 3 26 26 H 1.09000 * 109.47046 * 185.75214 * 1 2 3 27 27 H 1.08994 * 109.47207 * 239.99665 * 2 1 3 28 28 H 1.09001 * 109.47011 * 119.99517 * 2 1 3 29 29 H 0.97004 * 119.99979 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46667 * 144.82592 * 12 3 2 31 31 H 1.09001 * 109.47056 * 24.82744 * 12 3 2 32 32 H 1.07995 * 119.45696 * 0.02562 * 14 13 12 33 33 H 1.07994 * 119.57157 * 180.27570 * 15 14 13 34 34 H 1.08001 * 120.92501 * 359.95308 * 19 18 16 35 35 H 1.07996 * 120.03594 * 180.02562 * 20 19 18 36 36 H 1.08002 * 119.12361 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3637 1.9854 1.1793 5 1 2.8752 2.9366 1.1693 6 6 2.0563 1.3754 2.3877 7 7 0.9630 0.6511 2.4999 8 14 3.1941 1.5824 3.8546 9 1 2.7105 2.7019 4.7021 10 1 3.2082 0.3291 4.6510 11 1 4.5682 1.8809 3.3770 12 6 2.1372 2.1161 -1.2618 13 6 3.5480 2.0015 -1.7789 14 6 4.4376 3.0095 -1.5657 15 6 5.7479 2.9224 -2.0296 16 6 6.1749 1.8249 -2.7159 17 17 7.8118 1.7342 -3.2871 18 6 5.2817 0.7680 -2.9593 19 6 5.6824 -0.3828 -3.6633 20 6 4.7601 -1.3705 -3.8621 21 6 3.4646 -1.2210 -3.3718 22 7 3.0946 -0.1476 -2.7163 23 6 3.9483 0.8556 -2.4878 24 1 -0.3634 0.6005 0.8340 25 1 -0.3633 0.4221 -0.9370 26 1 -0.3633 -1.0225 0.1030 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.7484 0.2245 3.3443 30 1 1.8955 3.1659 -1.0950 31 1 1.4468 1.6961 -1.9933 32 1 4.1234 3.8892 -1.0237 33 1 6.4345 3.7348 -1.8428 34 1 6.6911 -0.4821 -4.0364 35 1 5.0350 -2.2669 -4.3981 36 1 2.7460 -2.0103 -3.5361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299555502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:59 Heat of formation + Delta-G solvation = 63.713825 kcal Electronic energy + Delta-G solvation = -20853.066375 eV Core-core repulsion = 17749.434891 eV Total energy + Delta-G solvation = -3103.631484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82267 -38.49347 -38.02121 -37.06607 -34.58666 -33.12451 -31.92570 -31.53578 -30.26266 -27.34350 -25.28528 -24.90438 -24.51725 -22.82426 -21.39092 -19.24059 -18.57328 -17.97657 -17.82999 -16.90749 -15.87814 -15.77811 -15.68254 -15.35098 -15.09543 -15.03622 -14.24800 -14.09837 -13.83371 -13.71925 -13.64338 -13.23753 -12.83069 -12.70524 -12.62307 -12.38655 -12.32402 -12.08626 -11.91181 -11.82814 -11.62903 -11.23162 -11.15254 -10.42650 -10.21954 -9.74927 -9.09189 -8.76037 -7.83034 -5.05287 -0.59395 -0.13939 0.96493 1.02741 1.43260 1.49254 1.57230 1.96276 2.56075 3.08898 3.24354 3.44457 3.68548 3.81927 3.83427 3.89095 4.06237 4.18129 4.44012 4.51134 4.56991 4.76877 4.81719 4.86505 5.02690 5.05506 5.08984 5.16044 5.26331 5.32250 5.35483 5.54499 5.60316 5.64041 5.75733 5.88206 6.20357 6.34743 7.05259 7.23271 7.95637 8.40304 9.19414 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.005981 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.624679 B = 4680.506763 C = 5609.881112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.174 3.826 3 N -0.592 5.592 4 C -0.261 4.261 5 H 0.073 0.927 6 C -0.040 4.040 7 N -0.902 5.902 8 Si 0.932 3.068 9 H -0.288 1.288 10 H -0.298 1.298 11 H -0.280 1.280 12 C 0.194 3.806 13 C -0.068 4.068 14 C -0.102 4.102 15 C -0.094 4.094 16 C -0.039 4.039 17 Cl -0.054 7.054 18 C -0.112 4.112 19 C -0.069 4.069 20 C -0.160 4.160 21 C 0.118 3.882 22 N -0.484 5.484 23 C 0.124 3.876 24 H 0.061 0.939 25 H 0.023 0.977 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.245 0.755 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.143 0.857 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.177 0.823 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.511 -1.419 -15.113 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.048 3.952 3 N -0.312 5.312 4 C -0.390 4.390 5 H 0.091 0.909 6 C -0.236 4.236 7 N -0.548 5.548 8 Si 0.761 3.239 9 H -0.215 1.215 10 H -0.224 1.224 11 H -0.206 1.206 12 C 0.068 3.932 13 C -0.072 4.072 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.067 4.067 17 Cl -0.025 7.025 18 C -0.115 4.115 19 C -0.095 4.095 20 C -0.179 4.179 21 C -0.055 4.055 22 N -0.192 5.192 23 C 0.003 3.997 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.195 0.805 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.704 -1.333 -14.651 17.623 hybrid contribution 1.276 -0.046 0.949 1.591 sum 10.979 -1.379 -13.701 17.612 Atomic orbital electron populations 1.22092 0.98858 0.99154 0.99559 1.20567 0.92647 0.84464 0.97475 1.44181 1.75168 1.10785 1.01103 1.19388 1.30268 1.05056 0.84327 0.90948 1.25165 0.97860 1.01665 0.98920 1.70381 1.21461 1.38121 1.24839 0.85796 0.80814 0.76415 0.80871 1.21492 1.22441 1.20600 1.19620 0.90191 0.95921 0.87478 1.20876 1.00275 0.92092 0.93910 1.20869 0.92443 0.99624 0.99348 1.21051 0.96353 0.97560 0.96269 1.20600 0.86439 0.96493 1.03131 1.98333 1.18165 1.98244 1.87805 1.18788 0.93945 0.96611 1.02171 1.21731 1.01293 0.91531 0.94981 1.22262 0.93610 1.01019 1.01044 1.23632 0.96205 0.94801 0.90827 1.68088 1.36318 1.01550 1.13279 1.18787 0.89335 0.94211 0.97366 0.92000 0.95818 0.95085 0.93093 0.95685 0.94512 0.92809 0.92411 0.83941 0.82445 0.82454 0.80547 0.79842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 9.69 71.98 0.70 -5.86 16 2 C 0.17 8.65 5.58 86.38 0.48 9.13 16 3 N -0.59 -29.55 2.53 -706.33 -1.78 -31.34 16 4 C -0.26 -14.19 9.60 84.03 0.81 -13.39 16 5 H 0.07 3.82 8.01 -2.91 -0.02 3.80 16 6 C -0.04 -2.22 4.61 84.86 0.39 -1.83 16 7 N -0.90 -52.24 9.13 21.65 0.20 -52.04 16 8 Si 0.93 45.25 29.66 68.60 2.03 47.29 16 9 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 12 C 0.19 8.16 5.52 85.63 0.47 8.63 16 13 C -0.07 -2.54 5.44 -19.79 -0.11 -2.65 16 14 C -0.10 -3.30 9.56 22.03 0.21 -3.09 16 15 C -0.09 -2.60 9.73 22.07 0.21 -2.39 16 16 C -0.04 -1.08 6.32 22.37 0.14 -0.94 16 17 Cl -0.05 -1.21 27.56 -2.72 -0.07 -1.29 16 18 C -0.11 -3.42 5.74 -21.26 -0.12 -3.54 16 19 C -0.07 -1.65 9.53 22.50 0.21 -1.43 16 20 C -0.16 -3.26 10.03 22.15 0.22 -3.03 16 21 C 0.12 2.99 11.15 85.06 0.95 3.94 16 22 N -0.48 -16.75 7.38 -188.63 -1.39 -18.14 16 23 C 0.12 4.45 6.58 40.28 0.27 4.72 16 24 H 0.06 3.37 6.16 -2.38 -0.01 3.36 16 25 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 2.36 5.79 -2.39 -0.01 2.34 16 28 H 0.02 1.40 6.26 -2.39 -0.01 1.39 16 29 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 30 H 0.05 2.18 7.93 -2.38 -0.02 2.16 16 31 H 0.06 2.40 7.71 -2.39 -0.02 2.39 16 32 H 0.14 4.26 8.01 -2.91 -0.02 4.23 16 33 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 34 H 0.16 2.95 7.06 -2.91 -0.02 2.92 16 35 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -65.00 312.35 4.91 -60.09 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.09 Total: 7.16 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.84 Total: -11.74 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -2.98 Total: -101.52 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.07 Total: -1.29 kcal Total: -65.00 4.91 -60.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299555502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.807 kcal (2) G-P(sol) polarization free energy of solvation -65.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds