Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99745 * 2 1 4 4 H 1.48503 * 109.47408 * 240.00504 * 3 2 1 5 5 H 1.48502 * 109.47242 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46996 * 120.00250 * 3 2 1 7 7 C 1.37875 * 120.00577 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00617 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47022 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47260 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47340 * 179.97438 * 11 10 9 13 13 C 1.38668 * 119.99771 * 179.97438 * 12 11 10 14 14 C 1.38599 * 121.05479 * 359.97438 * 13 12 11 15 15 C 1.38805 * 119.68827 * 180.02562 * 14 13 12 16 16 N 1.31278 * 121.86399 * 359.97438 * 15 14 13 17 17 C 1.33794 * 121.67948 * 0.02562 * 16 15 14 18 18 C 1.40568 * 120.98506 * 180.27984 * 17 16 15 19 19 C 1.36114 * 119.76821 * 180.27713 * 18 17 16 20 20 C 1.39377 * 121.02909 * 359.44303 * 19 18 17 21 21 Cl 1.73598 * 119.60671 * 180.26234 * 20 19 18 22 22 C 1.36353 * 120.78920 * 0.28104 * 20 19 18 23 23 C 1.40174 * 119.61888 * 0.02562 * 22 20 19 24 24 H 0.96998 * 120.00142 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46809 * 60.00332 * 9 7 2 26 26 H 1.09000 * 109.46974 * 300.00274 * 9 7 2 27 27 H 1.09006 * 109.46823 * 59.99789 * 10 9 7 28 28 H 1.09000 * 109.46950 * 300.00188 * 10 9 7 29 29 H 1.09007 * 109.46960 * 59.99808 * 11 10 9 30 30 H 1.09000 * 109.46828 * 300.00269 * 11 10 9 31 31 H 0.97000 * 119.99961 * 0.02562 * 12 11 10 32 32 H 1.08000 * 120.15897 * 0.04843 * 14 13 12 33 33 H 1.07997 * 119.06672 * 179.97438 * 15 14 13 34 34 H 1.07997 * 120.11527 * 359.96897 * 18 17 16 35 35 H 1.08005 * 119.47987 * 179.72396 * 19 18 17 36 36 H 1.07998 * 120.18876 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 7 2.4326 -6.1005 -0.0018 13 6 1.9704 -7.4079 -0.0019 14 6 0.6127 -7.6862 -0.0009 15 6 0.1813 -9.0056 -0.0005 16 7 1.0257 -10.0107 -0.0016 17 6 2.3495 -9.8164 -0.0025 18 6 3.2405 -10.9036 -0.0095 19 6 4.5827 -10.6773 -0.0047 20 6 5.0927 -9.3802 -0.0044 21 17 6.8111 -9.1343 -0.0051 22 6 4.2579 -8.3021 -0.0033 23 6 2.8703 -8.5003 -0.0019 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6042 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 0.8542 -5.0446 -0.8914 30 1 0.8536 -5.0450 0.8886 31 1 3.3863 -5.9232 -0.0014 32 1 -0.1064 -6.8804 -0.0008 33 1 -0.8789 -9.2109 0.0007 34 1 2.8615 -11.9148 -0.0137 35 1 5.2631 -11.5161 -0.0056 36 1 4.6636 -7.3012 -0.0036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301265680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = 11.480886 kcal Electronic energy + Delta-G solvation = -19225.322935 eV Core-core repulsion = 16119.426461 eV Total energy + Delta-G solvation = -3105.896474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87870 -38.75160 -38.00950 -36.95933 -35.83226 -34.02743 -32.15196 -31.44843 -30.38289 -28.25355 -25.48337 -24.94663 -24.13206 -22.37828 -22.15885 -19.44900 -18.86627 -18.42097 -17.97663 -16.55982 -16.46644 -16.41387 -16.01805 -15.59367 -15.48004 -15.20804 -14.78263 -14.40062 -14.10963 -13.98568 -13.74467 -13.72992 -13.02044 -12.84718 -12.65569 -12.47453 -12.34223 -12.25254 -11.94218 -11.92335 -11.55813 -11.50780 -11.23499 -10.56162 -10.44712 -10.09842 -9.72224 -8.48107 -8.21853 -6.32499 -0.51867 -0.23214 1.02090 1.09012 1.40507 1.42200 1.50172 1.86924 2.14397 2.40818 3.11319 3.12331 3.41986 3.57090 3.61460 3.94714 4.01216 4.08573 4.17923 4.28290 4.35406 4.52580 4.61938 4.73622 4.83562 4.91197 4.95911 5.03593 5.12346 5.14555 5.16883 5.39116 5.48626 5.69370 5.73547 5.82306 6.01734 6.22423 6.48555 6.84269 7.09084 7.37049 8.89582 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018900 B = 0.003092 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.141440 B = 9054.780566 C =10510.171001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.107 4.107 11 C 0.129 3.871 12 N -0.712 5.712 13 C 0.269 3.731 14 C -0.290 4.290 15 C 0.179 3.821 16 N -0.548 5.548 17 C 0.150 3.850 18 C -0.097 4.097 19 C -0.080 4.080 20 C -0.057 4.057 21 Cl -0.066 7.066 22 C -0.077 4.077 23 C -0.162 4.162 24 H 0.264 0.736 25 H -0.002 1.002 26 H -0.002 1.002 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.407 0.593 32 H 0.144 0.856 33 H 0.185 0.815 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -21.580 -0.013 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.145 4.145 11 C 0.006 3.994 12 N -0.337 5.337 13 C 0.152 3.848 14 C -0.318 4.318 15 C 0.012 3.988 16 N -0.261 5.261 17 C 0.028 3.972 18 C -0.116 4.116 19 C -0.100 4.100 20 C -0.084 4.084 21 Cl -0.037 7.037 22 C -0.097 4.097 23 C -0.167 4.167 24 H 0.073 0.927 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.244 0.756 32 H 0.162 0.838 33 H 0.202 0.798 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.612 -22.135 -0.014 23.407 hybrid contribution 0.839 2.281 0.003 2.430 sum 8.451 -19.854 -0.011 21.578 Atomic orbital electron populations 1.70064 1.07687 1.27879 1.51473 1.25922 0.95731 1.03215 0.94761 0.85561 0.78328 0.78399 0.79141 1.19248 1.20978 1.19258 1.21657 0.93600 0.92370 1.50765 0.92121 1.18902 0.94267 0.92363 0.95480 1.21601 0.98694 0.92598 1.01573 1.21491 0.91779 0.84423 1.01711 1.44835 1.09896 1.01993 1.77013 1.18187 0.93324 0.84446 0.88841 1.21693 0.93884 0.99723 1.16462 1.23029 1.00641 0.87044 0.88100 1.68149 1.01908 1.35443 1.20588 1.19112 0.91365 0.91302 0.95442 1.20928 0.91348 0.98941 1.00369 1.21000 0.95732 0.95653 0.97583 1.20574 0.85047 0.95073 1.07684 1.98376 1.11159 1.97177 1.97025 1.20733 0.91285 0.99266 0.98384 1.18460 0.93524 0.93708 1.11049 0.92730 0.98377 0.98384 0.92101 0.92110 0.91571 0.91565 0.75561 0.83825 0.79843 0.82232 0.81847 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.55 -29.65 9.11 25.60 0.23 -29.42 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.11 -3.83 5.27 30.59 0.16 -3.67 16 11 C 0.13 3.78 4.94 86.38 0.43 4.21 16 12 N -0.71 -18.00 5.65 -338.25 -1.91 -19.91 16 13 C 0.27 6.92 6.70 38.96 0.26 7.18 16 14 C -0.29 -7.03 9.36 22.49 0.21 -6.82 16 15 C 0.18 4.04 11.13 84.91 0.94 4.99 16 16 N -0.55 -13.98 10.33 -189.00 -1.95 -15.94 16 17 C 0.15 3.74 6.61 40.23 0.27 4.01 16 18 C -0.10 -1.88 9.98 22.34 0.22 -1.66 16 19 C -0.08 -1.35 9.72 22.05 0.21 -1.14 16 20 C -0.06 -1.11 6.28 22.10 0.14 -0.97 16 21 Cl -0.07 -1.20 28.92 -2.72 -0.08 -1.28 16 22 C -0.08 -1.68 9.27 22.30 0.21 -1.47 16 23 C -0.16 -4.04 5.75 -21.18 -0.12 -4.16 16 24 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 25 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 1.95 7.99 -2.38 -0.02 1.93 16 30 H 0.07 1.95 7.98 -2.39 -0.02 1.93 16 31 H 0.41 9.21 6.68 -92.71 -0.62 8.59 16 32 H 0.14 3.24 6.85 -2.91 -0.02 3.22 16 33 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 34 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.14 2.71 6.52 -2.91 -0.02 2.69 16 Total: -1.00 -63.26 322.39 2.63 -60.64 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.48 Total: 13.04 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 3.77 Total: -26.86 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -3.58 Total: -90.52 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -63.26 2.63 -60.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301265680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.118 kcal (2) G-P(sol) polarization free energy of solvation -63.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds