Wall clock time and date at job start Tue Mar 31 2020 08:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29038 * 1 3 3 O 1.34924 * 120.00070 * 2 1 4 4 C 1.50700 * 119.99779 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47467 * 3.93422 * 4 2 1 6 6 N 1.46505 * 112.90521 * 65.46945 * 5 4 2 7 7 S 1.65597 * 119.99859 * 47.91478 * 6 5 4 8 8 O 1.42107 * 104.27678 * 177.27796 * 7 6 5 9 9 O 1.42097 * 104.27817 * 305.13325 * 7 6 5 10 10 C 1.81397 * 104.45112 * 61.20469 * 7 6 5 11 11 C 1.53002 * 109.47521 * 174.54873 * 10 7 6 12 12 C 1.50688 * 109.47485 * 184.67874 * 11 10 7 13 13 H 1.08007 * 119.99988 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00139 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99929 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99828 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47395 * 89.99692 * 16 14 12 18 18 H 1.48503 * 109.46610 * 209.99909 * 16 14 12 19 19 H 1.48500 * 109.47051 * 329.99331 * 16 14 12 20 20 C 1.53774 * 113.61530 * 294.22229 * 5 4 2 21 21 C 1.53782 * 87.08243 * 220.01388 * 20 5 4 22 22 C 1.53779 * 113.61678 * 196.71908 * 5 4 2 23 23 H 0.97002 * 119.99871 * 5.05496 * 1 2 3 24 24 H 0.96698 * 113.99781 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.46730 * 243.93618 * 4 2 1 26 26 H 1.09004 * 109.47331 * 123.94103 * 4 2 1 27 27 H 0.96996 * 120.00080 * 227.91328 * 6 5 4 28 28 H 1.08998 * 109.47184 * 294.54523 * 10 7 6 29 29 H 1.09000 * 109.47163 * 54.54829 * 10 7 6 30 30 H 1.09002 * 109.47017 * 304.67802 * 11 10 7 31 31 H 1.09002 * 109.46745 * 64.67055 * 11 10 7 32 32 H 0.97002 * 119.99634 * 180.02562 * 15 14 12 33 33 H 1.09004 * 113.61557 * 105.46763 * 20 5 4 34 34 H 1.08998 * 113.61546 * 334.56105 * 20 5 4 35 35 H 1.09005 * 113.61538 * 139.97584 * 21 20 5 36 36 H 1.08998 * 113.61651 * 270.88635 * 21 20 5 37 37 H 1.08996 * 113.61469 * 25.43720 * 22 5 4 38 38 H 1.08998 * 113.69552 * 254.54256 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2904 0.0000 0.0000 3 8 1.9650 1.1685 0.0000 4 6 2.0438 -1.3051 -0.0006 5 6 1.0526 -2.4663 -0.1001 6 7 0.3306 -2.4921 -1.3746 7 16 1.1601 -2.3361 -2.7993 8 8 0.1624 -2.4708 -3.8023 9 8 1.8895 -1.1258 -2.6495 10 6 2.2856 -3.7584 -2.8260 11 6 3.0196 -3.8030 -4.1677 12 6 3.8678 -5.0467 -4.2352 13 1 3.8823 -5.7363 -3.4041 14 6 4.6262 -5.3039 -5.3576 15 7 4.6089 -4.4640 -6.3695 16 14 5.6770 -6.8460 -5.4416 17 1 4.8827 -7.9551 -6.0281 18 1 6.8682 -6.5876 -6.2899 19 1 6.1158 -7.2211 -4.0733 20 6 0.1381 -2.6026 1.1287 21 6 0.3186 -4.1241 0.9962 22 6 1.6541 -3.8254 0.2947 23 1 -0.4850 0.8368 -0.0740 24 1 1.3966 1.9508 0.0004 25 1 2.6165 -1.3944 0.9225 26 1 2.7224 -1.3326 -0.8532 27 1 -0.6332 -2.6006 -1.3839 28 1 3.0110 -3.6629 -2.0181 29 1 1.7136 -4.6769 -2.6941 30 1 2.2923 -3.8148 -4.9795 31 1 3.6561 -2.9234 -4.2630 32 1 5.1422 -4.6452 -7.1593 33 1 -0.8838 -2.2671 0.9518 34 1 0.5683 -2.1897 2.0411 35 1 0.4323 -4.6352 1.9523 36 1 -0.4192 -4.5965 0.3477 37 1 2.4988 -3.7468 0.9791 38 1 1.8568 -4.4780 -0.5544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332056955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:11 Heat of formation + Delta-G solvation = -80.718213 kcal Electronic energy + Delta-G solvation = -22396.011257 eV Core-core repulsion = 18980.851516 eV Total energy + Delta-G solvation = -3415.159741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05606 -38.52638 -36.53786 -35.39587 -33.89993 -33.30813 -32.24988 -31.17729 -29.63986 -26.06472 -25.26861 -23.82594 -21.62351 -20.82847 -19.68270 -18.55324 -18.16156 -17.35360 -16.53434 -16.03432 -15.45298 -15.39723 -15.06863 -14.76747 -14.64742 -14.52778 -13.73418 -13.37866 -13.19607 -12.75902 -12.52405 -12.36980 -11.92117 -11.75842 -11.61157 -11.52141 -11.26905 -11.07676 -10.99887 -10.80240 -10.67034 -10.40254 -10.32431 -10.06060 -9.77220 -9.70199 -9.48838 -9.34162 -8.95986 -8.49244 -6.11395 -4.16823 0.85065 2.47567 3.18576 3.26904 3.33194 3.35626 3.45281 4.25559 4.38458 4.50686 4.53633 4.59731 4.77450 4.82029 4.93624 5.18565 5.23969 5.38553 5.62481 5.68328 5.70833 5.75423 5.80049 5.93200 5.99247 6.11446 6.14780 6.31197 6.50409 6.52241 6.79743 7.29392 7.31625 7.38308 7.81612 8.18760 8.41042 8.86659 9.47938 10.99698 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.004916 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.442598 B = 5694.572132 C = 6119.016172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.389 3.611 3 O -0.528 6.528 4 C -0.076 4.076 5 C 0.178 3.822 6 N -1.089 6.089 7 S 2.590 3.410 8 O -0.969 6.969 9 O -0.968 6.968 10 C -0.592 4.592 11 C 0.028 3.972 12 C -0.519 4.519 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.111 4.111 21 C -0.142 4.142 22 C -0.167 4.167 23 H 0.330 0.670 24 H 0.391 0.609 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.416 0.584 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 5.240 17.067 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.159 3.841 3 O -0.321 6.321 4 C -0.116 4.116 5 C 0.087 3.913 6 N -0.845 5.845 7 S 2.688 3.312 8 O -0.959 6.959 9 O -0.958 6.958 10 C -0.725 4.725 11 C -0.010 4.010 12 C -0.558 4.558 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.529 5.529 16 Si 0.726 3.274 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.150 4.150 21 C -0.179 4.179 22 C -0.206 4.206 23 H 0.147 0.853 24 H 0.244 0.756 25 H 0.122 0.878 26 H 0.141 0.859 27 H 0.251 0.749 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.467 5.021 16.321 18.637 hybrid contribution 0.199 0.162 0.021 0.258 sum -7.268 5.184 16.342 18.622 Atomic orbital electron populations 1.69650 1.06157 1.35906 1.27472 1.24258 0.87485 0.86765 0.85547 1.84856 1.42531 1.15909 1.88822 1.21117 0.97628 0.86513 1.06297 1.20634 0.92742 0.92257 0.85665 1.55246 1.18804 1.91135 1.19318 1.05593 0.75570 0.77705 0.72356 1.93548 1.57632 1.87951 1.56811 1.93515 1.74243 1.43024 1.85012 1.30595 1.14222 1.17321 1.10399 1.18955 0.95567 0.99734 0.86790 1.21001 1.26289 1.06301 1.02242 0.91997 1.25067 0.96849 0.96991 0.95566 1.69958 1.40689 1.36179 1.06071 0.86481 0.79831 0.82909 0.78130 1.20487 1.21052 1.19736 1.23002 1.00848 0.95042 0.96081 1.22844 0.97528 0.96900 1.00652 1.23757 0.98126 0.96646 1.02037 0.85277 0.75553 0.87849 0.85852 0.74934 0.86096 0.85970 0.94918 0.94925 0.92557 0.89907 0.89878 0.91424 0.89960 0.88694 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -8.94 11.30 32.47 0.37 -8.57 16 2 C 0.39 4.95 7.27 -13.45 -0.10 4.85 16 3 O -0.53 -6.28 13.58 -16.49 -0.22 -6.51 16 4 C -0.08 -0.93 4.64 -27.88 -0.13 -1.06 16 5 C 0.18 2.03 0.50 -131.01 -0.07 1.96 16 6 N -1.09 -14.59 4.95 1.19 0.01 -14.58 16 7 S 2.59 46.52 5.29 -107.50 -0.57 45.95 16 8 O -0.97 -20.93 18.08 -57.54 -1.04 -21.97 16 9 O -0.97 -19.15 14.21 -57.54 -0.82 -19.96 16 10 C -0.59 -11.08 4.42 37.16 0.16 -10.92 16 11 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 12 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 16 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.11 -1.05 6.07 -25.92 -0.16 -1.20 16 21 C -0.14 -1.26 7.99 -25.92 -0.21 -1.47 16 22 C -0.17 -1.67 6.80 -25.92 -0.18 -1.85 16 23 H 0.33 3.37 8.57 -40.82 -0.35 3.02 16 24 H 0.39 2.85 8.70 45.56 0.40 3.25 16 25 H 0.10 0.95 8.07 -51.93 -0.42 0.54 16 26 H 0.12 1.77 5.70 -51.93 -0.30 1.47 16 27 H 0.42 5.07 8.73 -34.47 -0.30 4.77 16 28 H 0.12 1.97 7.15 -51.92 -0.37 1.60 16 29 H 0.12 2.07 7.80 -51.92 -0.40 1.66 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 34 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16 38 H 0.08 0.94 5.66 -51.93 -0.29 0.64 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -35.53 321.86 -7.45 -42.98 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.52 Total: 9.53 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.22 Total: -22.04 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 1.11 Total: -48.85 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -2.08 Total: -48.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 46.52 SS G_CDS: -0.57 Total: 45.95 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.53 -7.45 -42.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332056955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.739 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds