Wall clock time and date at job start Tue Mar 31 2020 08:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29038 * 1 3 3 O 1.34924 * 120.00070 * 2 1 4 4 C 1.50700 * 119.99779 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47467 * 3.93422 * 4 2 1 6 6 N 1.46505 * 112.90521 * 65.46945 * 5 4 2 7 7 S 1.65597 * 119.99859 * 47.91478 * 6 5 4 8 8 O 1.42107 * 104.27678 * 177.27796 * 7 6 5 9 9 O 1.42097 * 104.27817 * 305.13325 * 7 6 5 10 10 C 1.81397 * 104.45112 * 61.20469 * 7 6 5 11 11 C 1.53002 * 109.47521 * 174.54873 * 10 7 6 12 12 C 1.50688 * 109.47485 * 184.67874 * 11 10 7 13 13 H 1.08007 * 119.99988 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00139 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99929 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99828 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47395 * 89.99692 * 16 14 12 18 18 H 1.48503 * 109.46610 * 209.99909 * 16 14 12 19 19 H 1.48500 * 109.47051 * 329.99331 * 16 14 12 20 20 C 1.53774 * 113.61530 * 294.22229 * 5 4 2 21 21 C 1.53782 * 87.08243 * 220.01388 * 20 5 4 22 22 C 1.53779 * 113.61678 * 196.71908 * 5 4 2 23 23 H 0.97002 * 119.99871 * 5.05496 * 1 2 3 24 24 H 0.96698 * 113.99781 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.46730 * 243.93618 * 4 2 1 26 26 H 1.09004 * 109.47331 * 123.94103 * 4 2 1 27 27 H 0.96996 * 120.00080 * 227.91328 * 6 5 4 28 28 H 1.08998 * 109.47184 * 294.54523 * 10 7 6 29 29 H 1.09000 * 109.47163 * 54.54829 * 10 7 6 30 30 H 1.09002 * 109.47017 * 304.67802 * 11 10 7 31 31 H 1.09002 * 109.46745 * 64.67055 * 11 10 7 32 32 H 0.97002 * 119.99634 * 180.02562 * 15 14 12 33 33 H 1.09004 * 113.61557 * 105.46763 * 20 5 4 34 34 H 1.08998 * 113.61546 * 334.56105 * 20 5 4 35 35 H 1.09005 * 113.61538 * 139.97584 * 21 20 5 36 36 H 1.08998 * 113.61651 * 270.88635 * 21 20 5 37 37 H 1.08996 * 113.61469 * 25.43720 * 22 5 4 38 38 H 1.08998 * 113.69552 * 254.54256 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2904 0.0000 0.0000 3 8 1.9650 1.1685 0.0000 4 6 2.0438 -1.3051 -0.0006 5 6 1.0526 -2.4663 -0.1001 6 7 0.3306 -2.4921 -1.3746 7 16 1.1601 -2.3361 -2.7993 8 8 0.1624 -2.4708 -3.8023 9 8 1.8895 -1.1258 -2.6495 10 6 2.2856 -3.7584 -2.8260 11 6 3.0196 -3.8030 -4.1677 12 6 3.8678 -5.0467 -4.2352 13 1 3.8823 -5.7363 -3.4041 14 6 4.6262 -5.3039 -5.3576 15 7 4.6089 -4.4640 -6.3695 16 14 5.6770 -6.8460 -5.4416 17 1 4.8827 -7.9551 -6.0281 18 1 6.8682 -6.5876 -6.2899 19 1 6.1158 -7.2211 -4.0733 20 6 0.1381 -2.6026 1.1287 21 6 0.3186 -4.1241 0.9962 22 6 1.6541 -3.8254 0.2947 23 1 -0.4850 0.8368 -0.0740 24 1 1.3966 1.9508 0.0004 25 1 2.6165 -1.3944 0.9225 26 1 2.7224 -1.3326 -0.8532 27 1 -0.6332 -2.6006 -1.3839 28 1 3.0110 -3.6629 -2.0181 29 1 1.7136 -4.6769 -2.6941 30 1 2.2923 -3.8148 -4.9795 31 1 3.6561 -2.9234 -4.2630 32 1 5.1422 -4.6452 -7.1593 33 1 -0.8838 -2.2671 0.9518 34 1 0.5683 -2.1897 2.0411 35 1 0.4323 -4.6352 1.9523 36 1 -0.4192 -4.5965 0.3477 37 1 2.4988 -3.7468 0.9791 38 1 1.8568 -4.4780 -0.5544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332056955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:11 Heat of formation + Delta-G solvation = -112.379751 kcal Electronic energy + Delta-G solvation = -22397.384204 eV Core-core repulsion = 18980.851516 eV Total energy + Delta-G solvation = -3416.532688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.92609 -39.40531 -38.09663 -36.96205 -35.87895 -34.21439 -33.30963 -33.11940 -30.56258 -27.69574 -26.39684 -24.66803 -23.50588 -21.71390 -20.74079 -19.84088 -19.09331 -18.92906 -18.24428 -17.16141 -16.98356 -16.56357 -16.45270 -16.08867 -15.75714 -15.56156 -15.12565 -14.59928 -14.44267 -14.17307 -13.83294 -13.65307 -13.19858 -13.16351 -12.95860 -12.91132 -12.78128 -12.72367 -12.46560 -12.23313 -12.09982 -11.74081 -11.54740 -11.51893 -11.05010 -10.91197 -10.65073 -10.61971 -10.39559 -10.15777 -8.23379 -6.37056 -0.62017 1.43296 1.45007 1.54169 1.56070 1.90119 2.40483 2.64248 2.84633 3.10503 3.32300 3.62968 3.70129 3.80991 4.00160 4.09254 4.13125 4.21063 4.35007 4.60327 4.75885 4.81939 5.01226 5.06653 5.11171 5.24124 5.29356 5.30924 5.31660 5.38218 5.47627 5.71353 5.72060 6.06286 6.08955 6.27834 6.76998 7.33215 7.55089 8.89084 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.004916 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.442598 B = 5694.572132 C = 6119.016172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.376 3.624 3 O -0.540 6.540 4 C -0.087 4.087 5 C 0.163 3.837 6 N -1.072 6.072 7 S 2.611 3.389 8 O -1.010 7.010 9 O -0.988 6.988 10 C -0.586 4.586 11 C 0.022 3.978 12 C -0.535 4.535 13 H 0.079 0.921 14 C -0.005 4.005 15 N -0.937 5.937 16 Si 0.973 3.027 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.254 1.254 20 C -0.099 4.099 21 C -0.136 4.136 22 C -0.168 4.168 23 H 0.338 0.662 24 H 0.408 0.592 25 H 0.134 0.866 26 H 0.100 0.900 27 H 0.424 0.576 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.000 1.000 31 H 0.007 0.993 32 H 0.266 0.734 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 3.903 19.731 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C 0.147 3.853 3 O -0.336 6.336 4 C -0.126 4.126 5 C 0.074 3.926 6 N -0.832 5.832 7 S 2.709 3.291 8 O -1.001 7.001 9 O -0.977 6.977 10 C -0.719 4.719 11 C -0.017 4.017 12 C -0.573 4.573 13 H 0.097 0.903 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.797 3.203 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.178 1.178 20 C -0.138 4.138 21 C -0.173 4.173 22 C -0.207 4.207 23 H 0.155 0.845 24 H 0.264 0.736 25 H 0.152 0.848 26 H 0.118 0.882 27 H 0.261 0.739 28 H 0.165 0.835 29 H 0.160 0.840 30 H 0.019 0.981 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.381 3.692 18.997 20.712 hybrid contribution 0.120 0.677 -0.744 1.013 sum -7.261 4.369 18.253 20.125 Atomic orbital electron populations 1.69639 1.06040 1.36585 1.27295 1.24447 0.87783 0.87212 0.85846 1.84820 1.43410 1.16627 1.88725 1.21266 0.97724 0.86719 1.06860 1.21007 0.93482 0.93079 0.85076 1.54793 1.18926 1.90760 1.18712 1.04685 0.74844 0.76984 0.72635 1.93486 1.58868 1.88289 1.59414 1.93498 1.74835 1.43861 1.85556 1.30480 1.14907 1.19082 1.07390 1.18807 0.94979 0.98407 0.89506 1.21523 1.26108 1.06984 1.02726 0.90287 1.26120 0.98422 1.00550 0.95179 1.70113 1.42015 1.38590 1.06926 0.85322 0.77690 0.78404 0.78907 1.19797 1.21043 1.17810 1.22970 0.99998 0.95538 0.95311 1.22835 0.96585 0.96535 1.01343 1.23856 0.99577 0.95015 1.02269 0.84468 0.73614 0.84768 0.88212 0.73948 0.83468 0.83952 0.98148 0.97461 0.92501 0.90521 0.88264 0.89602 0.90245 0.86458 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.83 11.30 -166.06 -1.88 -18.71 16 2 C 0.38 9.05 7.27 88.52 0.64 9.70 16 3 O -0.54 -12.28 13.58 -81.93 -1.11 -13.39 16 4 C -0.09 -1.96 4.64 29.85 0.14 -1.82 16 5 C 0.16 3.35 0.50 4.12 0.00 3.35 16 6 N -1.07 -27.44 4.95 -150.14 -0.74 -28.18 16 7 S 2.61 94.50 5.29 -56.49 -0.30 94.20 16 8 O -1.01 -44.74 18.08 -127.65 -2.31 -47.05 16 9 O -0.99 -39.66 14.21 -127.65 -1.81 -41.47 16 10 C -0.59 -21.77 4.42 71.98 0.32 -21.45 16 11 C 0.02 1.14 4.98 29.85 0.15 1.29 16 12 C -0.53 -29.19 9.11 25.60 0.23 -28.96 16 13 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 14 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 15 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 16 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 20 C -0.10 -1.56 6.07 31.12 0.19 -1.37 16 21 C -0.14 -1.94 7.99 31.12 0.25 -1.69 16 22 C -0.17 -2.83 6.80 31.12 0.21 -2.62 16 23 H 0.34 6.46 8.57 -92.71 -0.79 5.67 16 24 H 0.41 5.54 8.70 -74.06 -0.64 4.89 16 25 H 0.13 2.09 8.07 -2.39 -0.02 2.07 16 26 H 0.10 2.78 5.70 -2.39 -0.01 2.77 16 27 H 0.42 9.79 8.73 -96.75 -0.84 8.95 16 28 H 0.15 4.62 7.15 -2.39 -0.02 4.60 16 29 H 0.14 4.65 7.80 -2.39 -0.02 4.64 16 30 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 33 H 0.08 1.33 7.93 -2.38 -0.02 1.32 16 34 H 0.10 1.29 8.10 -2.39 -0.02 1.27 16 35 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.12 1.46 8.05 -2.39 -0.02 1.44 16 38 H 0.07 1.44 5.66 -2.39 -0.01 1.42 16 Total: -1.00 -77.96 321.86 -4.42 -82.37 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -1.17 Total: 27.50 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 2.60 Total: -43.36 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -2.34 Total: -103.70 kcal Atomic # 8 Polarization: -96.68 SS G_CDS: -5.23 Total: -101.92 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 94.50 SS G_CDS: -0.30 Total: 94.20 kcal Total: -77.96 -4.42 -82.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332056955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.006 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds