Wall clock time and date at job start Tue Mar 31 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39759 * 120.19905 * 347.57826 * 3 2 1 5 5 C 1.37783 * 119.93806 * 180.02562 * 4 3 2 6 6 C 1.38573 * 120.35187 * 359.93514 * 5 4 3 7 7 C 1.38088 * 120.41389 * 0.02562 * 6 5 4 8 8 Cl 1.73605 * 119.97846 * 180.02562 * 7 6 5 9 9 C 1.38995 * 120.05047 * 0.02562 * 7 6 5 10 10 N 1.39091 * 120.17623 * 179.69918 * 9 7 6 11 11 C 1.46846 * 110.99911 * 64.21687 * 10 9 7 12 12 C 1.53038 * 109.52188 * 174.15888 * 11 10 9 13 13 C 1.53119 * 109.28114 * 59.18046 * 12 11 10 14 14 C 1.50699 * 109.52402 * 182.43928 * 13 12 11 15 15 H 1.08003 * 119.99629 * 119.67817 * 14 13 12 16 16 C 1.37876 * 120.00141 * 299.67877 * 14 13 12 17 17 N 1.31514 * 119.99558 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00330 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46988 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47344 * 119.99860 * 18 16 14 21 21 H 1.48503 * 109.47419 * 240.00368 * 18 16 14 22 22 C 1.53126 * 109.15741 * 302.34600 * 13 12 11 23 23 C 1.46846 * 111.00389 * 300.00332 * 10 9 7 24 24 H 1.08004 * 120.03456 * 0.03507 * 4 3 2 25 25 H 1.07999 * 119.81981 * 179.97438 * 5 4 3 26 26 H 1.08006 * 119.78959 * 180.02562 * 6 5 4 27 27 H 1.09005 * 109.45771 * 294.17312 * 11 10 9 28 28 H 1.08994 * 109.46826 * 54.13884 * 11 10 9 29 29 H 1.08991 * 109.50352 * 299.23058 * 12 11 10 30 30 H 1.09008 * 109.50128 * 179.11847 * 12 11 10 31 31 H 1.09000 * 109.52256 * 62.24291 * 13 12 11 32 32 H 0.97008 * 119.99828 * 180.02562 * 17 16 14 33 33 H 1.09005 * 109.49840 * 297.71155 * 22 13 12 34 34 H 1.08992 * 109.53421 * 177.61939 * 22 13 12 35 35 H 1.09001 * 109.46348 * 305.85628 * 23 10 9 36 36 H 1.09004 * 109.45964 * 65.82053 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2716 -1.1787 0.2598 5 6 4.6494 -1.1718 0.2590 6 6 5.3436 -0.0008 0.0003 7 6 4.6632 1.1725 -0.2590 8 17 5.5444 2.6330 -0.5824 9 6 3.2733 1.1852 -0.2614 10 7 2.5853 2.3669 -0.5162 11 6 2.8430 2.8419 -1.8816 12 6 1.9609 4.0576 -2.1750 13 6 2.2714 5.1637 -1.1627 14 6 1.3638 6.3412 -1.4092 15 1 0.6898 6.6751 -0.6342 16 6 1.3939 6.9924 -2.6242 17 7 2.2143 6.5854 -3.5681 18 14 0.2685 8.4515 -2.9301 19 1 -0.5517 8.7066 -1.7186 20 1 1.0869 9.6525 -3.2350 21 1 -0.6241 8.1558 -4.0795 22 6 2.0414 4.6280 0.2532 23 6 2.9211 3.3958 0.4763 24 1 2.7358 -2.0946 0.4609 25 1 5.1911 -2.0842 0.4604 26 1 6.4237 -0.0058 0.0015 27 1 3.8920 3.1229 -1.9764 28 1 2.6144 2.0474 -2.5918 29 1 0.9117 3.7740 -2.0939 30 1 2.1638 4.4196 -3.1831 31 1 3.3105 5.4746 -1.2701 32 1 2.2358 7.0437 -4.4228 33 1 0.9933 4.3533 0.3726 34 1 2.3011 5.3971 0.9805 35 1 2.7491 3.0035 1.4786 36 1 3.9696 3.6741 0.3704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334335491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:20 Heat of formation + Delta-G solvation = 56.112303 kcal Electronic energy + Delta-G solvation = -20731.391622 eV Core-core repulsion = 17627.430511 eV Total energy + Delta-G solvation = -3103.961111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -40.37552 -37.76460 -36.70919 -36.04554 -34.11926 -31.75563 -31.28601 -29.92590 -29.12112 -25.69022 -23.91819 -22.98869 -22.17203 -21.29621 -19.09327 -18.70805 -16.87807 -16.26649 -16.04396 -15.36100 -14.74108 -14.61256 -14.45226 -13.97982 -13.57439 -13.18714 -13.11933 -12.88487 -12.67018 -12.49828 -12.23093 -11.93339 -11.83493 -11.50613 -11.48766 -11.05448 -10.95780 -10.74640 -10.44272 -10.12138 -10.03794 -9.48588 -9.08135 -8.96894 -8.79031 -8.71147 -8.28781 -7.95538 -5.96592 -4.01314 0.54499 0.88706 1.96774 2.85173 2.92516 3.31721 3.39939 3.44304 3.74000 3.91063 3.97684 4.46821 4.61639 4.80556 4.94169 5.14534 5.30761 5.34091 5.65994 5.76994 5.80434 5.88963 5.98221 6.05925 6.20446 6.26281 6.31850 6.53639 6.58591 6.83042 7.02100 7.08999 7.40312 7.46625 7.60506 7.70566 7.79963 8.04443 8.13799 8.49094 9.02290 9.63232 11.09798 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022645 B = 0.005024 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.159416 B = 5572.206495 C = 6314.724235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.269 3.731 3 C -0.004 4.004 4 C -0.064 4.064 5 C -0.122 4.122 6 C -0.077 4.077 7 C -0.077 4.077 8 Cl -0.038 7.038 9 C 0.166 3.834 10 N -0.509 5.509 11 C 0.049 3.951 12 C -0.102 4.102 13 C 0.050 3.950 14 C -0.509 4.509 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.104 4.104 23 C 0.046 3.954 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.023 0.977 32 H 0.258 0.742 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -15.615 6.983 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.046 4.046 3 C -0.009 4.009 4 C -0.085 4.085 5 C -0.140 4.140 6 C -0.097 4.097 7 C -0.107 4.107 8 Cl -0.009 7.009 9 C 0.067 3.933 10 N -0.231 5.231 11 C -0.075 4.075 12 C -0.140 4.140 13 C 0.031 3.969 14 C -0.547 4.547 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.142 4.142 23 C -0.079 4.079 24 H 0.157 0.843 25 H 0.158 0.842 26 H 0.156 0.844 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.244 -15.474 6.797 18.388 hybrid contribution 0.761 1.111 -0.386 1.401 sum 8.004 -14.363 6.410 17.649 Atomic orbital electron populations 1.81189 1.11887 1.07560 1.07874 1.25088 0.92079 0.93364 0.94110 1.15894 0.85145 0.93325 1.06525 1.21207 0.94320 0.96481 0.96520 1.20963 0.93500 0.98059 1.01469 1.21237 1.00827 0.90826 0.96818 1.21918 0.92592 0.89682 1.06487 1.98394 1.74947 1.34224 1.93299 1.18873 0.88130 0.92494 0.93797 1.59591 1.55630 1.02222 1.05617 1.22601 1.00896 0.98917 0.85107 1.21676 0.96802 0.91764 1.03791 1.18668 0.96891 0.92751 0.88541 1.21240 1.21467 1.13026 0.99012 0.92698 1.24951 0.95530 0.97217 0.96244 1.69877 1.37481 1.40764 1.05002 0.86589 0.80809 0.82740 0.78179 1.19840 1.21139 1.21094 1.21670 0.98521 0.93542 1.00495 1.22537 1.00418 0.92140 0.92799 0.84287 0.84182 0.84442 0.93085 0.92626 0.93882 0.88513 0.95866 0.93158 0.92594 0.92740 0.92420 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.20 18.54 41.84 0.78 -6.43 16 2 C 0.27 4.13 14.81 -22.47 -0.33 3.79 16 3 C 0.00 -0.05 5.76 -106.62 -0.61 -0.67 16 4 C -0.06 -0.56 9.75 -39.18 -0.38 -0.94 16 5 C -0.12 -0.88 10.02 -39.62 -0.40 -1.28 16 6 C -0.08 -0.69 9.81 -39.51 -0.39 -1.08 16 7 C -0.08 -0.97 5.96 -39.36 -0.23 -1.20 16 8 Cl -0.04 -0.53 22.74 -51.86 -1.18 -1.71 16 9 C 0.17 2.40 4.67 -83.51 -0.39 2.01 16 10 N -0.51 -9.01 3.98 -170.86 -0.68 -9.69 16 11 C 0.05 0.96 5.08 -3.83 -0.02 0.94 16 12 C -0.10 -2.41 5.12 -26.65 -0.14 -2.55 16 13 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 14 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 15 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 17 N -0.89 -25.32 11.37 55.43 0.63 -24.69 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.10 -2.20 5.32 -26.65 -0.14 -2.35 16 23 C 0.05 0.83 5.02 -3.84 -0.02 0.81 16 24 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 25 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 26 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 27 H 0.05 0.98 5.24 -51.93 -0.27 0.70 16 28 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 29 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 2.53 6.17 -51.92 -0.32 2.21 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.06 0.97 4.83 -51.93 -0.25 0.72 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -30.05 310.10 -8.63 -38.68 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.19 Total: -3.13 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -3.64 Total: -14.19 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.73 Total: -40.81 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.18 Total: -1.71 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.05 -8.63 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334335491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.795 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds