Wall clock time and date at job start Tue Mar 31 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39759 * 120.19905 * 347.57826 * 3 2 1 5 5 C 1.37783 * 119.93806 * 180.02562 * 4 3 2 6 6 C 1.38573 * 120.35187 * 359.93514 * 5 4 3 7 7 C 1.38088 * 120.41389 * 0.02562 * 6 5 4 8 8 Cl 1.73605 * 119.97846 * 180.02562 * 7 6 5 9 9 C 1.38995 * 120.05047 * 0.02562 * 7 6 5 10 10 N 1.39091 * 120.17623 * 179.69918 * 9 7 6 11 11 C 1.46846 * 110.99911 * 64.21687 * 10 9 7 12 12 C 1.53038 * 109.52188 * 174.15888 * 11 10 9 13 13 C 1.53119 * 109.28114 * 59.18046 * 12 11 10 14 14 C 1.50699 * 109.52402 * 182.43928 * 13 12 11 15 15 H 1.08003 * 119.99629 * 119.67817 * 14 13 12 16 16 C 1.37876 * 120.00141 * 299.67877 * 14 13 12 17 17 N 1.31514 * 119.99558 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00330 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46988 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47344 * 119.99860 * 18 16 14 21 21 H 1.48503 * 109.47419 * 240.00368 * 18 16 14 22 22 C 1.53126 * 109.15741 * 302.34600 * 13 12 11 23 23 C 1.46846 * 111.00389 * 300.00332 * 10 9 7 24 24 H 1.08004 * 120.03456 * 0.03507 * 4 3 2 25 25 H 1.07999 * 119.81981 * 179.97438 * 5 4 3 26 26 H 1.08006 * 119.78959 * 180.02562 * 6 5 4 27 27 H 1.09005 * 109.45771 * 294.17312 * 11 10 9 28 28 H 1.08994 * 109.46826 * 54.13884 * 11 10 9 29 29 H 1.08991 * 109.50352 * 299.23058 * 12 11 10 30 30 H 1.09008 * 109.50128 * 179.11847 * 12 11 10 31 31 H 1.09000 * 109.52256 * 62.24291 * 13 12 11 32 32 H 0.97008 * 119.99828 * 180.02562 * 17 16 14 33 33 H 1.09005 * 109.49840 * 297.71155 * 22 13 12 34 34 H 1.08992 * 109.53421 * 177.61939 * 22 13 12 35 35 H 1.09001 * 109.46348 * 305.85628 * 23 10 9 36 36 H 1.09004 * 109.45964 * 65.82053 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2716 -1.1787 0.2598 5 6 4.6494 -1.1718 0.2590 6 6 5.3436 -0.0008 0.0003 7 6 4.6632 1.1725 -0.2590 8 17 5.5444 2.6330 -0.5824 9 6 3.2733 1.1852 -0.2614 10 7 2.5853 2.3669 -0.5162 11 6 2.8430 2.8419 -1.8816 12 6 1.9609 4.0576 -2.1750 13 6 2.2714 5.1637 -1.1627 14 6 1.3638 6.3412 -1.4092 15 1 0.6898 6.6751 -0.6342 16 6 1.3939 6.9924 -2.6242 17 7 2.2143 6.5854 -3.5681 18 14 0.2685 8.4515 -2.9301 19 1 -0.5517 8.7066 -1.7186 20 1 1.0869 9.6525 -3.2350 21 1 -0.6241 8.1558 -4.0795 22 6 2.0414 4.6280 0.2532 23 6 2.9211 3.3958 0.4763 24 1 2.7358 -2.0946 0.4609 25 1 5.1911 -2.0842 0.4604 26 1 6.4237 -0.0058 0.0015 27 1 3.8920 3.1229 -1.9764 28 1 2.6144 2.0474 -2.5918 29 1 0.9117 3.7740 -2.0939 30 1 2.1638 4.4196 -3.1831 31 1 3.3105 5.4746 -1.2701 32 1 2.2358 7.0437 -4.4228 33 1 0.9933 4.3533 0.3726 34 1 2.3011 5.3971 0.9805 35 1 2.7491 3.0035 1.4786 36 1 3.9696 3.6741 0.3704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334335491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:18 Heat of formation + Delta-G solvation = 39.458572 kcal Electronic energy + Delta-G solvation = -20732.113782 eV Core-core repulsion = 17627.430511 eV Total energy + Delta-G solvation = -3104.683271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -41.46440 -39.07924 -37.77593 -37.16786 -35.83071 -33.51222 -32.19942 -31.57908 -30.36864 -27.50420 -24.82448 -24.42874 -23.85036 -22.60627 -20.54484 -19.92215 -18.49733 -17.87437 -17.04176 -16.59665 -16.25164 -15.99016 -15.54216 -15.18204 -15.00505 -14.64668 -14.44952 -14.33156 -14.21497 -13.80586 -13.72642 -13.22047 -13.04050 -12.84356 -12.73121 -12.60843 -12.59969 -12.38694 -12.10185 -11.95525 -11.58052 -11.39726 -10.87504 -10.72666 -10.40693 -9.90847 -9.69233 -9.31287 -8.09853 -6.22321 -0.31647 0.05094 1.02514 1.37356 1.39642 1.50652 1.78150 1.92826 2.42132 2.73618 2.76131 2.92879 3.17310 3.87458 4.01218 4.08061 4.25037 4.27700 4.36199 4.42924 4.50644 4.56681 4.70267 4.81775 4.92090 5.01826 5.14531 5.15426 5.21927 5.24342 5.26873 5.51662 5.59335 5.66609 5.85979 5.99170 6.16227 6.32820 6.39625 6.56122 6.88291 7.45164 8.95038 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022645 B = 0.005024 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.159416 B = 5572.206495 C = 6314.724235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.287 3.713 3 C -0.021 4.021 4 C -0.045 4.045 5 C -0.095 4.095 6 C -0.064 4.064 7 C -0.089 4.089 8 Cl -0.060 7.060 9 C 0.134 3.866 10 N -0.519 5.519 11 C 0.064 3.936 12 C -0.092 4.092 13 C 0.051 3.949 14 C -0.534 4.534 15 H 0.047 0.953 16 C 0.016 3.984 17 N -0.915 5.915 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.282 1.282 22 C -0.098 4.098 23 C 0.054 3.946 24 H 0.172 0.828 25 H 0.190 0.810 26 H 0.166 0.834 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.066 0.934 31 H -0.002 1.002 32 H 0.260 0.740 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.145 -18.230 8.085 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.027 4.027 3 C -0.026 4.026 4 C -0.066 4.066 5 C -0.112 4.112 6 C -0.083 4.083 7 C -0.118 4.118 8 Cl -0.030 7.030 9 C 0.036 3.964 10 N -0.241 5.241 11 C -0.062 4.062 12 C -0.130 4.130 13 C 0.032 3.968 14 C -0.572 4.572 15 H 0.065 0.935 16 C -0.183 4.183 17 N -0.554 5.554 18 Si 0.776 3.224 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.208 1.208 22 C -0.136 4.136 23 C -0.071 4.071 24 H 0.189 0.811 25 H 0.207 0.793 26 H 0.184 0.816 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.990 -18.104 7.912 21.707 hybrid contribution 0.305 1.801 -0.699 1.956 sum 9.295 -16.304 7.213 20.105 Atomic orbital electron populations 1.81196 1.13517 1.09242 1.10093 1.25613 0.92700 0.91878 0.92556 1.16078 0.83687 0.94366 1.08448 1.21634 0.95121 0.95839 0.94007 1.21524 0.92766 0.98919 0.98021 1.21654 1.02356 0.89775 0.94542 1.21925 0.91711 0.90132 1.07988 1.98387 1.75056 1.36053 1.93553 1.18821 0.89086 0.91392 0.97119 1.59339 1.57205 1.03317 1.04199 1.22279 0.99784 0.97114 0.87011 1.21403 0.96193 0.93536 1.01911 1.18586 0.94677 0.92484 0.91016 1.21600 1.22039 1.14415 0.99183 0.93481 1.25678 0.96877 0.99724 0.96028 1.70002 1.38496 1.41695 1.05245 0.85630 0.79057 0.79743 0.77975 1.19528 1.20309 1.20764 1.21526 0.98357 0.95407 0.98310 1.22409 0.99764 0.91043 0.93897 0.81070 0.79296 0.81632 0.92741 0.92019 0.96270 0.91528 0.98370 0.93034 0.94215 0.92333 0.90538 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.48 18.54 19.01 0.35 -16.13 16 2 C 0.29 8.59 14.81 88.33 1.31 9.89 16 3 C -0.02 -0.49 5.76 -21.16 -0.12 -0.61 16 4 C -0.05 -0.56 9.75 22.53 0.22 -0.34 16 5 C -0.09 -0.76 10.02 22.24 0.22 -0.54 16 6 C -0.06 -0.83 9.81 22.31 0.22 -0.61 16 7 C -0.09 -2.00 5.96 22.42 0.13 -1.86 16 8 Cl -0.06 -1.60 22.74 -2.72 -0.06 -1.66 16 9 C 0.13 3.67 4.67 38.68 0.18 3.85 16 10 N -0.52 -18.47 3.98 -694.49 -2.76 -21.23 16 11 C 0.06 2.54 5.08 86.33 0.44 2.98 16 12 C -0.09 -4.59 5.12 30.65 0.16 -4.43 16 13 C 0.05 2.63 2.16 -11.46 -0.02 2.61 16 14 C -0.53 -30.64 8.56 25.60 0.22 -30.42 16 15 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 16 C 0.02 0.88 5.31 84.65 0.45 1.33 16 17 N -0.91 -53.64 11.37 21.45 0.24 -53.40 16 18 Si 0.95 45.08 29.54 68.60 2.03 47.10 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 C -0.10 -4.29 5.32 30.65 0.16 -4.13 16 23 C 0.05 1.95 5.02 86.32 0.43 2.39 16 24 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 25 H 0.19 -0.13 8.06 -2.91 -0.02 -0.15 16 26 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 27 H 0.05 2.14 5.24 -2.38 -0.01 2.13 16 28 H 0.06 2.34 8.10 -2.39 -0.02 2.33 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 3.69 6.17 -2.38 -0.01 3.68 16 31 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 33 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.08 2.45 8.10 -2.39 -0.02 2.43 16 36 H 0.06 2.17 4.83 -2.38 -0.01 2.16 16 Total: -1.00 -70.13 310.10 4.90 -65.23 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: 1.10 Total: -0.03 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 4.00 Total: -19.89 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -2.17 Total: -90.76 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.06 Total: -1.66 kcal Total: -70.13 4.90 -65.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334335491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.689 kcal (2) G-P(sol) polarization free energy of solvation -70.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds