Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39850 * 120.08274 * 260.27818 * 3 2 1 5 5 C 1.37605 * 119.93197 * 179.72008 * 4 3 2 6 6 C 1.39236 * 120.11054 * 0.55727 * 5 4 3 7 7 N 1.39186 * 119.91457 * 179.70026 * 6 5 4 8 8 C 1.46838 * 111.00064 * 124.23054 * 7 6 5 9 9 C 1.53045 * 109.52358 * 174.16028 * 8 7 6 10 10 C 1.53116 * 109.27778 * 59.17922 * 9 8 7 11 11 C 1.50700 * 109.52204 * 182.44109 * 10 9 8 12 12 H 1.08001 * 119.99465 * 119.68078 * 11 10 9 13 13 C 1.37871 * 120.00121 * 299.68265 * 11 10 9 14 14 N 1.31515 * 119.99943 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99901 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47328 * 90.00258 * 15 13 11 17 17 H 1.48498 * 109.46892 * 210.00223 * 15 13 11 18 18 H 1.48504 * 109.47038 * 329.99873 * 15 13 11 19 19 C 1.53123 * 109.16121 * 302.34598 * 10 9 8 20 20 C 1.46847 * 110.99903 * 0.02562 * 7 6 5 21 21 C 1.39093 * 120.17091 * 359.71606 * 6 5 4 22 22 C 1.37832 * 120.06414 * 0.02562 * 21 6 5 23 23 Cl 1.73593 * 120.05554 * 180.02562 * 22 21 6 24 24 H 1.08001 * 120.03082 * 359.97438 * 4 3 2 25 25 H 1.07994 * 119.94185 * 180.25488 * 5 4 3 26 26 H 1.09003 * 109.46349 * 294.17495 * 8 7 6 27 27 H 1.08997 * 109.46495 * 54.14260 * 8 7 6 28 28 H 1.08994 * 109.49893 * 299.24076 * 9 8 7 29 29 H 1.08999 * 109.50132 * 179.12220 * 9 8 7 30 30 H 1.09001 * 109.52187 * 62.24949 * 10 9 8 31 31 H 0.97001 * 120.00108 * 180.02562 * 14 13 11 32 32 H 1.08995 * 109.50308 * 297.71863 * 19 10 9 33 33 H 1.08999 * 109.53636 * 177.61564 * 19 10 9 34 34 H 1.09001 * 109.46167 * 305.85830 * 20 7 6 35 35 H 1.09001 * 109.46198 * 65.82543 * 20 7 6 36 36 H 1.08001 * 119.96959 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.2053 1.1927 5 6 4.6449 0.1996 1.1902 6 6 5.3404 0.0019 0.0002 7 7 6.7322 0.0031 0.0013 8 6 7.2600 -1.2411 -0.5728 9 6 8.7829 -1.1449 -0.6895 10 6 9.3823 -0.9071 0.6993 11 6 10.8768 -0.7518 0.5829 12 1 11.3507 0.1648 0.9017 13 6 11.6388 -1.7797 0.0696 14 7 11.0615 -2.8956 -0.3190 15 14 13.4914 -1.5873 -0.0740 16 1 14.1369 -2.0646 1.1753 17 1 13.9846 -2.3880 -1.2232 18 1 13.8253 -0.1562 -0.2882 19 6 8.7801 0.3684 1.2950 20 6 7.2572 0.2282 1.3541 21 6 4.6478 -0.1964 -1.1896 22 6 3.2695 -0.1973 -1.1943 23 17 2.4053 -0.4455 -2.6793 24 1 2.7307 0.3636 2.1156 25 1 5.1863 0.3535 2.1118 26 1 6.9974 -2.0791 0.0730 27 1 6.8290 -1.3962 -1.5619 28 1 9.0458 -0.3157 -1.3461 29 1 9.1758 -2.0746 -1.1011 30 1 9.1524 -1.7545 1.3452 31 1 11.5977 -3.6190 -0.6798 32 1 9.0429 1.2215 0.6695 33 1 9.1709 0.5207 2.3010 34 1 6.8242 1.1404 1.7646 35 1 6.9947 -0.6168 1.9908 36 1 5.1905 -0.3498 -2.1106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334493988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = 46.976363 kcal Electronic energy + Delta-G solvation = -19959.505172 eV Core-core repulsion = 16855.147897 eV Total energy + Delta-G solvation = -3104.357275 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45211 -38.22954 -36.67075 -36.33562 -34.18227 -31.91886 -31.44042 -30.05916 -29.37893 -26.04930 -23.78037 -23.42956 -21.66161 -21.52214 -19.29883 -18.80102 -17.21578 -16.42652 -16.09641 -15.15492 -14.70333 -14.60668 -14.26413 -14.21206 -13.91435 -13.64575 -13.15534 -12.93417 -12.82761 -12.71835 -12.50094 -12.22893 -11.86115 -11.65957 -11.41406 -11.18495 -11.07260 -10.95612 -10.62598 -10.44964 -10.18679 -9.87202 -9.52062 -9.15248 -9.06561 -8.87473 -8.41752 -7.83127 -6.08766 -4.14320 0.55121 1.00983 1.79970 2.55833 2.76546 3.25112 3.32787 3.35614 3.57194 3.72896 3.96730 4.36778 4.52008 4.93027 5.00012 5.11046 5.22082 5.32077 5.47930 5.57970 5.64269 5.78411 5.88018 5.94351 5.99354 6.01835 6.26607 6.30198 6.40141 6.60336 6.84650 6.88517 7.20473 7.24305 7.36018 7.39337 7.63969 7.86077 7.98066 8.33717 8.89014 9.51255 10.97665 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.034390 B = 0.003383 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.992933 B = 8273.749962 C = 8838.783662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.263 3.737 3 C -0.075 4.075 4 C -0.025 4.025 5 C -0.181 4.181 6 C 0.177 3.823 7 N -0.482 5.482 8 C 0.058 3.942 9 C -0.109 4.109 10 C 0.046 3.954 11 C -0.513 4.513 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.110 4.110 20 C 0.050 3.950 21 C -0.145 4.145 22 C 0.038 3.962 23 Cl -0.057 7.057 24 H 0.139 0.861 25 H 0.145 0.855 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.101 0.899 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.234 4.566 0.754 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.052 4.052 3 C -0.080 4.080 4 C -0.046 4.046 5 C -0.203 4.203 6 C 0.074 3.926 7 N -0.193 5.193 8 C -0.065 4.065 9 C -0.147 4.147 10 C 0.028 3.972 11 C -0.551 4.551 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.148 4.148 20 C -0.076 4.076 21 C -0.166 4.166 22 C 0.008 3.992 23 Cl -0.028 7.028 24 H 0.157 0.843 25 H 0.163 0.837 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.712 4.728 0.235 14.506 hybrid contribution 1.186 -0.452 0.104 1.274 sum -12.525 4.276 0.339 13.239 Atomic orbital electron populations 1.81202 1.11884 1.09541 1.07181 1.25436 0.92399 0.93549 0.93846 1.15667 0.84520 1.14081 0.93781 1.20943 0.93755 0.94069 0.95880 1.21419 0.93834 1.06876 0.98144 1.19307 0.89928 0.91115 0.92272 1.58731 1.02194 1.35186 1.23175 1.22568 0.99743 0.86004 0.98197 1.21791 0.88121 1.03808 1.01027 1.18718 0.94687 0.91615 0.92202 1.21155 0.91554 1.00824 1.41555 0.92621 1.24960 0.98464 0.95237 0.95267 1.69843 1.35309 1.05038 1.42857 0.86616 0.85745 0.78140 0.77637 1.20746 1.21246 1.19920 1.21751 0.90504 1.01634 1.00866 1.22467 0.98485 1.00222 0.86408 1.20599 0.90957 1.06132 0.98919 1.20659 0.92072 1.00173 0.86285 1.98398 1.76589 1.94753 1.33092 0.84310 0.83715 0.93864 0.91313 0.93351 0.88130 0.95753 0.92935 0.92132 0.92304 0.91017 0.93538 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.97 18.54 41.83 0.78 -5.19 16 2 C 0.26 3.25 14.38 -22.47 -0.32 2.93 16 3 C -0.07 -0.83 5.75 -106.74 -0.61 -1.44 16 4 C -0.03 -0.24 9.75 -39.21 -0.38 -0.62 16 5 C -0.18 -1.90 8.79 -39.44 -0.35 -2.25 16 6 C 0.18 2.23 5.64 -83.83 -0.47 1.76 16 7 N -0.48 -7.13 4.69 -171.14 -0.80 -7.93 16 8 C 0.06 0.96 5.25 -3.83 -0.02 0.94 16 9 C -0.11 -2.27 5.12 -26.65 -0.14 -2.40 16 10 C 0.05 1.02 2.16 -91.65 -0.20 0.83 16 11 C -0.51 -13.02 8.56 -34.44 -0.29 -13.31 16 12 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 13 C 0.06 1.61 5.31 -17.82 -0.09 1.51 16 14 N -0.89 -23.80 11.37 55.43 0.63 -23.17 16 15 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C -0.11 -1.97 5.32 -26.65 -0.14 -2.11 16 20 C 0.05 0.72 4.14 -3.83 -0.02 0.71 16 21 C -0.14 -1.73 8.91 -39.41 -0.35 -2.08 16 22 C 0.04 0.44 6.34 -39.10 -0.25 0.19 16 23 Cl -0.06 -0.66 28.02 -51.86 -1.45 -2.11 16 24 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 25 H 0.15 1.32 5.77 -52.49 -0.30 1.02 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.02 6.68 -51.93 -0.35 0.67 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.10 2.37 6.17 -51.93 -0.32 2.05 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.87 6.96 -51.93 -0.36 0.51 16 35 H 0.05 0.65 7.72 -51.93 -0.40 0.25 16 36 H 0.15 1.70 7.13 -52.49 -0.37 1.32 16 LS Contribution 314.14 15.07 4.73 4.73 Total: -1.00 -26.62 314.14 -8.96 -35.58 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.18 Total: -1.76 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.64 Total: -15.35 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.60 Total: -36.29 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.45 Total: -2.11 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.62 -8.96 -35.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334493988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.552 kcal (2) G-P(sol) polarization free energy of solvation -26.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds