Wall clock time and date at job start Tue Mar 31 2020 06:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39850 * 120.08274 * 260.27818 * 3 2 1 5 5 C 1.37605 * 119.93197 * 179.72008 * 4 3 2 6 6 C 1.39236 * 120.11054 * 0.55727 * 5 4 3 7 7 N 1.39186 * 119.91457 * 179.70026 * 6 5 4 8 8 C 1.46838 * 111.00064 * 124.23054 * 7 6 5 9 9 C 1.53045 * 109.52358 * 174.16028 * 8 7 6 10 10 C 1.53116 * 109.27778 * 59.17922 * 9 8 7 11 11 C 1.50700 * 109.52204 * 182.44109 * 10 9 8 12 12 H 1.08001 * 119.99465 * 119.68078 * 11 10 9 13 13 C 1.37871 * 120.00121 * 299.68265 * 11 10 9 14 14 N 1.31515 * 119.99943 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99901 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47328 * 90.00258 * 15 13 11 17 17 H 1.48498 * 109.46892 * 210.00223 * 15 13 11 18 18 H 1.48504 * 109.47038 * 329.99873 * 15 13 11 19 19 C 1.53123 * 109.16121 * 302.34598 * 10 9 8 20 20 C 1.46847 * 110.99903 * 0.02562 * 7 6 5 21 21 C 1.39093 * 120.17091 * 359.71606 * 6 5 4 22 22 C 1.37832 * 120.06414 * 0.02562 * 21 6 5 23 23 Cl 1.73593 * 120.05554 * 180.02562 * 22 21 6 24 24 H 1.08001 * 120.03082 * 359.97438 * 4 3 2 25 25 H 1.07994 * 119.94185 * 180.25488 * 5 4 3 26 26 H 1.09003 * 109.46349 * 294.17495 * 8 7 6 27 27 H 1.08997 * 109.46495 * 54.14260 * 8 7 6 28 28 H 1.08994 * 109.49893 * 299.24076 * 9 8 7 29 29 H 1.08999 * 109.50132 * 179.12220 * 9 8 7 30 30 H 1.09001 * 109.52187 * 62.24949 * 10 9 8 31 31 H 0.97001 * 120.00108 * 180.02562 * 14 13 11 32 32 H 1.08995 * 109.50308 * 297.71863 * 19 10 9 33 33 H 1.08999 * 109.53636 * 177.61564 * 19 10 9 34 34 H 1.09001 * 109.46167 * 305.85830 * 20 7 6 35 35 H 1.09001 * 109.46198 * 65.82543 * 20 7 6 36 36 H 1.08001 * 119.96959 * 180.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.2053 1.1927 5 6 4.6449 0.1996 1.1902 6 6 5.3404 0.0019 0.0002 7 7 6.7322 0.0031 0.0013 8 6 7.2600 -1.2411 -0.5728 9 6 8.7829 -1.1449 -0.6895 10 6 9.3823 -0.9071 0.6993 11 6 10.8768 -0.7518 0.5829 12 1 11.3507 0.1648 0.9017 13 6 11.6388 -1.7797 0.0696 14 7 11.0615 -2.8956 -0.3190 15 14 13.4914 -1.5873 -0.0740 16 1 14.1369 -2.0646 1.1753 17 1 13.9846 -2.3880 -1.2232 18 1 13.8253 -0.1562 -0.2882 19 6 8.7801 0.3684 1.2950 20 6 7.2572 0.2282 1.3541 21 6 4.6478 -0.1964 -1.1896 22 6 3.2695 -0.1973 -1.1943 23 17 2.4053 -0.4455 -2.6793 24 1 2.7307 0.3636 2.1156 25 1 5.1863 0.3535 2.1118 26 1 6.9974 -2.0791 0.0730 27 1 6.8290 -1.3962 -1.5619 28 1 9.0458 -0.3157 -1.3461 29 1 9.1758 -2.0746 -1.1011 30 1 9.1524 -1.7545 1.3452 31 1 11.5977 -3.6190 -0.6798 32 1 9.0429 1.2215 0.6695 33 1 9.1709 0.5207 2.3010 34 1 6.8242 1.1404 1.7646 35 1 6.9947 -0.6168 1.9908 36 1 5.1905 -0.3498 -2.1106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334493988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:59 Heat of formation + Delta-G solvation = 34.182957 kcal Electronic energy + Delta-G solvation = -19960.059935 eV Core-core repulsion = 16855.147897 eV Total energy + Delta-G solvation = -3104.912039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47560 -39.35403 -37.59557 -37.44478 -35.69456 -33.49442 -32.50665 -31.28522 -30.57746 -27.67264 -24.97419 -24.70101 -22.93961 -22.68719 -20.55867 -19.97212 -18.50730 -18.10755 -17.07037 -16.52355 -16.09935 -15.74026 -15.31283 -15.23519 -15.01063 -14.77277 -14.64855 -14.31093 -14.13612 -13.81919 -13.73835 -13.30680 -13.15020 -12.93150 -12.84237 -12.47052 -12.33830 -12.31563 -12.09301 -12.00429 -11.85910 -11.41407 -10.89527 -10.67057 -10.56213 -10.35297 -9.92571 -8.87761 -8.05830 -6.17476 -0.37060 0.17326 0.90992 1.43009 1.45714 1.53992 1.58992 1.81849 2.46408 2.61107 2.78480 2.93838 3.22478 3.70947 3.99433 4.10010 4.15690 4.27541 4.32798 4.38792 4.51588 4.70700 4.71564 4.82414 4.85849 4.93828 5.06334 5.10119 5.16533 5.23750 5.39566 5.45292 5.59426 5.67851 5.95069 6.04721 6.21072 6.30059 6.42012 6.44113 6.94279 7.50586 8.98485 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.034390 B = 0.003383 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.992933 B = 8273.749962 C = 8838.783662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.279 3.721 3 C -0.075 4.075 4 C -0.010 4.010 5 C -0.172 4.172 6 C 0.162 3.838 7 N -0.491 5.491 8 C 0.072 3.928 9 C -0.100 4.100 10 C 0.041 3.959 11 C -0.530 4.530 12 H 0.051 0.949 13 C 0.015 3.985 14 N -0.915 5.915 15 Si 0.946 3.054 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.270 1.270 19 C -0.103 4.103 20 C 0.056 3.944 21 C -0.146 4.146 22 C 0.034 3.966 23 Cl -0.061 7.061 24 H 0.172 0.828 25 H 0.165 0.835 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.067 0.933 30 H -0.003 1.003 31 H 0.259 0.741 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.297 5.624 1.838 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.035 4.035 3 C -0.080 4.080 4 C -0.031 4.031 5 C -0.193 4.193 6 C 0.060 3.940 7 N -0.203 5.203 8 C -0.053 4.053 9 C -0.139 4.139 10 C 0.023 3.977 11 C -0.569 4.569 12 H 0.069 0.931 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.773 3.227 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.195 1.195 19 C -0.141 4.141 20 C -0.070 4.070 21 C -0.167 4.167 22 C 0.004 3.996 23 Cl -0.032 7.032 24 H 0.189 0.811 25 H 0.183 0.817 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.015 0.985 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.796 5.800 1.324 15.947 hybrid contribution 1.484 -0.779 -0.224 1.691 sum -13.312 5.021 1.100 14.270 Atomic orbital electron populations 1.81228 1.12873 1.10707 1.08231 1.25550 0.92464 0.92606 0.92878 1.15802 0.83852 1.14078 0.94308 1.21247 0.93379 0.92081 0.96347 1.21623 0.94184 1.05497 0.97952 1.19325 0.88700 0.92620 0.93348 1.58629 1.03779 1.34390 1.23471 1.22258 0.96582 0.87130 0.99296 1.21504 0.91418 1.01318 0.99615 1.18703 0.93502 0.92788 0.92726 1.21583 0.93698 1.00504 1.41069 0.93120 1.25651 1.02186 0.95198 0.95331 1.69976 1.36394 1.05537 1.43599 0.85739 0.81423 0.78085 0.77491 1.20394 1.21229 1.19501 1.21592 0.93325 0.98728 1.00452 1.22432 0.95742 1.02193 0.86627 1.20590 0.91083 1.06111 0.98952 1.20673 0.91976 1.00542 0.86422 1.98401 1.76567 1.94789 1.33430 0.81081 0.81737 0.94302 0.89820 0.94754 0.91503 0.98479 0.93151 0.92995 0.91789 0.87599 0.92799 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.07 18.54 19.00 0.35 -11.72 16 2 C 0.28 6.28 14.38 88.33 1.27 7.55 16 3 C -0.07 -1.44 5.75 -21.23 -0.12 -1.56 16 4 C -0.01 -0.14 9.75 22.51 0.22 0.08 16 5 C -0.17 -2.89 8.79 22.36 0.20 -2.69 16 6 C 0.16 3.63 5.64 38.42 0.22 3.85 16 7 N -0.49 -13.56 4.69 -695.38 -3.26 -16.82 16 8 C 0.07 2.32 5.25 86.33 0.45 2.78 16 9 C -0.10 -4.26 5.12 30.65 0.16 -4.10 16 10 C 0.04 1.86 2.16 -11.46 -0.02 1.84 16 11 C -0.53 -27.47 8.56 25.60 0.22 -27.25 16 12 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 13 C 0.01 0.79 5.31 84.65 0.45 1.24 16 14 N -0.92 -50.23 11.37 21.45 0.24 -49.99 16 15 Si 0.95 41.99 29.54 68.60 2.03 44.02 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 17 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 C -0.10 -3.62 5.32 30.65 0.16 -3.46 16 20 C 0.06 1.47 4.14 86.33 0.36 1.82 16 21 C -0.15 -3.20 8.91 22.38 0.20 -3.00 16 22 C 0.03 0.71 6.34 22.58 0.14 0.86 16 23 Cl -0.06 -1.32 28.02 -2.72 -0.08 -1.40 16 24 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 25 H 0.17 2.16 5.77 -2.91 -0.02 2.14 16 26 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.08 2.43 6.68 -2.39 -0.02 2.41 16 28 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 3.29 6.17 -2.39 -0.01 3.27 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.11 2.10 6.96 -2.39 -0.02 2.09 16 35 H 0.05 1.35 7.72 -2.39 -0.02 1.33 16 36 H 0.15 3.18 7.13 -2.91 -0.02 3.15 16 Total: -1.00 -58.66 314.14 4.29 -54.37 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.10 Total: 3.60 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: 3.90 Total: -22.05 kcal Atomic # 7 Polarization: -75.87 SS G_CDS: -2.66 Total: -78.53 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -58.66 4.29 -54.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334493988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.555 kcal (2) G-P(sol) polarization free energy of solvation -58.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds