Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39739 * 120.19905 * 9.59998 * 3 2 1 5 5 C 1.37893 * 119.90243 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 119.84133 * 180.02562 * 5 4 3 7 7 C 1.38663 * 120.31940 * 359.97438 * 5 4 3 8 8 C 1.38017 * 120.41065 * 359.72285 * 7 5 4 9 9 C 1.38877 * 120.08326 * 0.55307 * 8 7 5 10 10 N 1.39092 * 120.15850 * 179.72531 * 9 8 7 11 11 C 1.46854 * 110.99647 * 299.72629 * 10 9 8 12 12 C 1.53037 * 109.51886 * 185.84520 * 11 10 9 13 13 C 1.53126 * 109.27801 * 300.81620 * 12 11 10 14 14 C 1.50698 * 109.52311 * 177.56193 * 13 12 11 15 15 H 1.07998 * 119.99689 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99713 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00304 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99718 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46867 * 60.01141 * 18 16 14 20 20 H 1.48506 * 109.47165 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47674 * 300.00604 * 18 16 14 22 22 C 1.53124 * 109.15878 * 57.65645 * 13 12 11 23 23 C 1.46844 * 111.00263 * 63.93418 * 10 9 8 24 24 H 1.07990 * 120.05037 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.79605 * 180.02562 * 7 5 4 26 26 H 1.07999 * 119.96092 * 180.30378 * 8 7 5 27 27 H 1.08994 * 109.46310 * 65.82747 * 11 10 9 28 28 H 1.09004 * 109.45830 * 305.85434 * 11 10 9 29 29 H 1.09000 * 109.50480 * 180.88135 * 12 11 10 30 30 H 1.08992 * 109.50737 * 60.75564 * 12 11 10 31 31 H 1.08999 * 109.51925 * 297.75795 * 13 12 11 32 32 H 0.96995 * 120.00213 * 179.97438 * 17 16 14 33 33 H 1.08999 * 109.50059 * 62.28737 * 22 13 12 34 34 H 1.08993 * 109.49981 * 182.40384 * 22 13 12 35 35 H 1.09002 * 109.46133 * 294.17779 * 23 10 9 36 36 H 1.09002 * 109.46211 * 54.14305 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 -1.1899 -0.2014 5 6 4.6504 -1.1823 -0.1997 6 17 5.5226 -2.6621 -0.4507 7 6 5.3436 0.0018 0.0005 8 6 4.6621 1.1861 0.1945 9 6 3.2734 1.1970 0.2018 10 7 2.5850 2.3888 0.4028 11 6 2.9198 2.9765 1.7063 12 6 2.0396 4.2033 1.9554 13 6 2.2701 5.2259 0.8392 14 6 1.3621 6.4107 1.0463 15 1 0.6879 6.4334 1.8897 16 6 1.3929 7.4661 0.1597 17 7 2.2143 7.4387 -0.8671 18 14 0.2669 8.9344 0.4160 19 1 0.5618 9.5609 1.7297 20 1 0.4914 9.9254 -0.6670 21 1 -1.1478 8.4841 0.3887 22 6 1.9607 4.5740 -0.5113 23 6 2.8431 3.3364 -0.6889 24 1 2.7360 -2.1146 -0.3574 25 1 6.4236 -0.0020 -0.0002 26 1 5.2094 2.1050 0.3449 27 1 3.9682 3.2745 1.7118 28 1 2.7475 2.2403 2.4915 29 1 2.2991 4.6485 2.9159 30 1 0.9917 3.9038 1.9637 31 1 3.3091 5.5548 0.8554 32 1 2.2357 8.1810 -1.4910 33 1 0.9115 4.2803 -0.5417 34 1 2.1638 5.2839 -1.3130 35 1 3.8920 3.6327 -0.6721 36 1 2.6152 2.8617 -1.6433 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336506339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = 46.756876 kcal Electronic energy + Delta-G solvation = -20217.797819 eV Core-core repulsion = 17113.431026 eV Total energy + Delta-G solvation = -3104.366793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 8.61 seconds Orbital eigenvalues (eV) -40.38854 -37.96234 -36.76708 -36.07517 -34.08587 -31.72973 -31.60797 -30.02040 -29.04594 -25.75060 -24.05850 -23.08595 -22.24128 -21.25652 -19.14708 -18.64595 -16.94073 -16.33142 -16.09261 -15.55978 -14.75125 -14.56201 -14.38275 -13.87268 -13.63220 -13.17439 -13.06832 -12.96251 -12.72940 -12.62223 -12.52142 -12.17018 -11.86259 -11.62735 -11.38048 -11.21883 -10.98600 -10.85950 -10.58831 -10.35094 -10.13706 -9.56742 -9.29270 -9.10277 -8.84087 -8.70475 -8.34033 -8.21637 -6.02054 -4.07103 0.52085 0.84594 1.79817 2.82350 2.88964 3.31244 3.35817 3.39070 3.71025 3.87295 3.95076 4.42425 4.54023 4.74697 5.01247 5.09426 5.28579 5.41286 5.52983 5.61003 5.69931 5.78901 5.86098 5.96135 6.10365 6.12909 6.30007 6.42517 6.48402 6.72774 6.93815 7.00263 7.32298 7.38033 7.53912 7.67615 7.73294 7.96165 8.06429 8.42234 8.95832 9.57775 11.04323 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031089 B = 0.003613 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.428566 B = 7748.334594 C = 8149.831770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.269 3.731 3 C -0.002 4.002 4 C -0.060 4.060 5 C -0.049 4.049 6 Cl -0.067 7.067 7 C -0.071 4.071 8 C -0.140 4.140 9 C 0.162 3.838 10 N -0.514 5.514 11 C 0.065 3.935 12 C -0.107 4.107 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.105 4.105 23 C 0.063 3.937 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.045 0.955 34 H 0.098 0.902 35 H 0.035 0.965 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.990 -16.718 0.726 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.047 4.047 3 C -0.007 4.007 4 C -0.082 4.082 5 C -0.076 4.076 6 Cl -0.038 7.038 7 C -0.092 4.092 8 C -0.160 4.160 9 C 0.064 3.936 10 N -0.236 5.236 11 C -0.060 4.060 12 C -0.145 4.145 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.144 4.144 23 C -0.061 4.061 24 H 0.161 0.839 25 H 0.157 0.843 26 H 0.160 0.840 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.053 0.947 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.834 -16.792 0.549 18.137 hybrid contribution 0.799 0.915 0.028 1.215 sum 7.633 -15.877 0.577 17.626 Atomic orbital electron populations 1.81190 1.11868 1.07508 1.07799 1.25068 0.92054 0.93394 0.94180 1.15855 0.85139 0.92957 1.06715 1.20917 0.92071 0.97493 0.97677 1.20600 0.91874 0.88135 1.07005 1.98378 1.76221 1.33916 1.95251 1.21135 1.00792 0.90402 0.96824 1.21783 0.94347 0.98719 1.01178 1.19107 0.90173 0.91419 0.92899 1.59576 1.56209 1.03051 1.04771 1.22245 0.98396 0.97358 0.88006 1.21712 0.98739 0.93896 1.00184 1.18687 0.96928 0.91708 0.89645 1.21145 1.21630 1.02020 1.10225 0.92753 1.24951 0.95504 0.98226 0.95215 1.69840 1.37344 1.31842 1.14115 0.86687 0.81360 0.82443 0.77684 1.20337 1.21337 1.20300 1.21720 0.97023 0.92683 1.02929 1.22418 0.99294 0.93434 0.91001 0.83869 0.84338 0.83980 0.94579 0.91951 0.92584 0.92310 0.95875 0.92976 0.93618 0.88421 0.94691 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.11 18.54 41.84 0.78 -6.33 16 2 C 0.27 4.07 14.81 -22.47 -0.33 3.74 16 3 C 0.00 -0.02 5.76 -106.62 -0.61 -0.64 16 4 C -0.06 -0.59 9.53 -39.15 -0.37 -0.97 16 5 C -0.05 -0.46 6.31 -39.55 -0.25 -0.71 16 6 Cl -0.07 -0.56 28.94 -51.86 -1.50 -2.06 16 7 C -0.07 -0.64 9.81 -39.51 -0.39 -1.03 16 8 C -0.14 -1.52 8.67 -39.43 -0.34 -1.86 16 9 C 0.16 2.16 4.67 -83.54 -0.39 1.77 16 10 N -0.51 -8.43 3.99 -170.89 -0.68 -9.11 16 11 C 0.07 1.07 5.11 -3.83 -0.02 1.05 16 12 C -0.11 -2.13 5.32 -26.65 -0.14 -2.28 16 13 C 0.05 1.15 2.16 -91.64 -0.20 0.95 16 14 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 17 N -0.89 -24.68 11.37 55.43 0.63 -24.05 16 18 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.11 -2.37 5.12 -26.65 -0.14 -2.51 16 23 C 0.06 1.14 5.16 -3.84 -0.02 1.12 16 24 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 25 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 26 H 0.14 1.48 7.12 -52.49 -0.37 1.11 16 27 H 0.04 0.55 7.34 -51.93 -0.38 0.17 16 28 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 2.45 6.17 -51.93 -0.32 2.13 16 35 H 0.03 0.60 7.53 -51.93 -0.39 0.21 16 36 H 0.06 1.03 8.10 -51.93 -0.42 0.60 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -28.21 319.11 -8.97 -37.18 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.39 Total: -2.71 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -3.59 Total: -13.77 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.72 Total: -39.49 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.21 -8.97 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336506339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.939 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.61 seconds