Wall clock time and date at job start Tue Mar 31 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39739 * 120.19905 * 9.59998 * 3 2 1 5 5 C 1.37893 * 119.90243 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 119.84133 * 180.02562 * 5 4 3 7 7 C 1.38663 * 120.31940 * 359.97438 * 5 4 3 8 8 C 1.38017 * 120.41065 * 359.72285 * 7 5 4 9 9 C 1.38877 * 120.08326 * 0.55307 * 8 7 5 10 10 N 1.39092 * 120.15850 * 179.72531 * 9 8 7 11 11 C 1.46854 * 110.99647 * 299.72629 * 10 9 8 12 12 C 1.53037 * 109.51886 * 185.84520 * 11 10 9 13 13 C 1.53126 * 109.27801 * 300.81620 * 12 11 10 14 14 C 1.50698 * 109.52311 * 177.56193 * 13 12 11 15 15 H 1.07998 * 119.99689 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99713 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00304 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99718 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46867 * 60.01141 * 18 16 14 20 20 H 1.48506 * 109.47165 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47674 * 300.00604 * 18 16 14 22 22 C 1.53124 * 109.15878 * 57.65645 * 13 12 11 23 23 C 1.46844 * 111.00263 * 63.93418 * 10 9 8 24 24 H 1.07990 * 120.05037 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.79605 * 180.02562 * 7 5 4 26 26 H 1.07999 * 119.96092 * 180.30378 * 8 7 5 27 27 H 1.08994 * 109.46310 * 65.82747 * 11 10 9 28 28 H 1.09004 * 109.45830 * 305.85434 * 11 10 9 29 29 H 1.09000 * 109.50480 * 180.88135 * 12 11 10 30 30 H 1.08992 * 109.50737 * 60.75564 * 12 11 10 31 31 H 1.08999 * 109.51925 * 297.75795 * 13 12 11 32 32 H 0.96995 * 120.00213 * 179.97438 * 17 16 14 33 33 H 1.08999 * 109.50059 * 62.28737 * 22 13 12 34 34 H 1.08993 * 109.49981 * 182.40384 * 22 13 12 35 35 H 1.09002 * 109.46133 * 294.17779 * 23 10 9 36 36 H 1.09002 * 109.46211 * 54.14305 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 -1.1899 -0.2014 5 6 4.6504 -1.1823 -0.1997 6 17 5.5226 -2.6621 -0.4507 7 6 5.3436 0.0018 0.0005 8 6 4.6621 1.1861 0.1945 9 6 3.2734 1.1970 0.2018 10 7 2.5850 2.3888 0.4028 11 6 2.9198 2.9765 1.7063 12 6 2.0396 4.2033 1.9554 13 6 2.2701 5.2259 0.8392 14 6 1.3621 6.4107 1.0463 15 1 0.6879 6.4334 1.8897 16 6 1.3929 7.4661 0.1597 17 7 2.2143 7.4387 -0.8671 18 14 0.2669 8.9344 0.4160 19 1 0.5618 9.5609 1.7297 20 1 0.4914 9.9254 -0.6670 21 1 -1.1478 8.4841 0.3887 22 6 1.9607 4.5740 -0.5113 23 6 2.8431 3.3364 -0.6889 24 1 2.7360 -2.1146 -0.3574 25 1 6.4236 -0.0020 -0.0002 26 1 5.2094 2.1050 0.3449 27 1 3.9682 3.2745 1.7118 28 1 2.7475 2.2403 2.4915 29 1 2.2991 4.6485 2.9159 30 1 0.9917 3.9038 1.9637 31 1 3.3091 5.5548 0.8554 32 1 2.2357 8.1810 -1.4910 33 1 0.9115 4.2803 -0.5417 34 1 2.1638 5.2839 -1.3130 35 1 3.8920 3.6327 -0.6721 36 1 2.6152 2.8617 -1.6433 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336506339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:04 Heat of formation + Delta-G solvation = 32.769263 kcal Electronic energy + Delta-G solvation = -20218.404367 eV Core-core repulsion = 17113.431026 eV Total energy + Delta-G solvation = -3104.973341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 6.82 seconds Orbital eigenvalues (eV) -41.44260 -39.18180 -37.70562 -37.15621 -35.71249 -33.43142 -32.51863 -31.56029 -30.26257 -27.48996 -24.94213 -24.50556 -23.80814 -22.55470 -20.38955 -19.97250 -18.48052 -17.88489 -17.03327 -16.63288 -16.40805 -15.97504 -15.29238 -15.03994 -14.99928 -14.64136 -14.35166 -14.17480 -14.13447 -13.96606 -13.92096 -13.35021 -13.11753 -12.92708 -12.79977 -12.61559 -12.43540 -12.25465 -11.99498 -11.94625 -11.91608 -11.40034 -10.86340 -10.71825 -10.38511 -10.13394 -9.62017 -9.47395 -8.08860 -6.20639 -0.37847 0.01959 1.05129 1.40589 1.41967 1.48918 1.74383 1.86552 2.43331 2.69140 2.71861 2.92052 3.18644 3.76431 3.98152 4.03252 4.15433 4.24622 4.31129 4.39604 4.49576 4.67060 4.69637 4.77536 4.82771 4.92845 5.03472 5.06990 5.19755 5.23391 5.27464 5.43655 5.56543 5.63680 5.88591 6.01185 6.18685 6.36032 6.41327 6.54262 6.89618 7.46721 8.95363 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031089 B = 0.003613 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.428566 B = 7748.334594 C = 8149.831770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.287 3.713 3 C -0.015 4.015 4 C -0.047 4.047 5 C -0.045 4.045 6 Cl -0.052 7.052 7 C -0.054 4.054 8 C -0.136 4.136 9 C 0.142 3.858 10 N -0.527 5.527 11 C 0.073 3.927 12 C -0.101 4.101 13 C 0.047 3.953 14 C -0.536 4.536 15 H 0.046 0.954 16 C 0.017 3.983 17 N -0.913 5.913 18 Si 0.947 3.053 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.278 1.278 22 C -0.096 4.096 23 C 0.078 3.922 24 H 0.162 0.838 25 H 0.168 0.832 26 H 0.150 0.850 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.003 0.997 32 H 0.261 0.739 33 H 0.019 0.981 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.948 -18.431 1.032 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.028 4.028 3 C -0.019 4.019 4 C -0.068 4.068 5 C -0.072 4.072 6 Cl -0.023 7.023 7 C -0.073 4.073 8 C -0.156 4.156 9 C 0.045 3.955 10 N -0.249 5.249 11 C -0.052 4.052 12 C -0.139 4.139 13 C 0.029 3.971 14 C -0.574 4.574 15 H 0.064 0.936 16 C -0.182 4.182 17 N -0.552 5.552 18 Si 0.773 3.227 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.204 1.204 22 C -0.134 4.134 23 C -0.048 4.048 24 H 0.180 0.820 25 H 0.185 0.815 26 H 0.167 0.833 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.797 -18.523 0.864 20.524 hybrid contribution 0.278 1.361 -0.074 1.391 sum 9.075 -17.161 0.790 19.429 Atomic orbital electron populations 1.81198 1.13428 1.09134 1.09926 1.25542 0.92617 0.91946 0.92690 1.15888 0.83693 0.93851 1.08498 1.21052 0.92468 0.97118 0.96200 1.20690 0.91698 0.88861 1.05903 1.98397 1.75767 1.33066 1.95076 1.21404 1.02150 0.89328 0.94445 1.21778 0.93021 0.99835 1.00978 1.19044 0.91192 0.89978 0.95285 1.59330 1.57764 1.03719 1.04067 1.22134 0.98150 0.96134 0.88791 1.21558 0.98545 0.94762 0.99012 1.18641 0.94905 0.91977 0.91620 1.21550 1.22151 1.03625 1.10089 0.93557 1.25643 0.96833 1.00652 0.95085 1.69960 1.38350 1.32385 1.14552 0.85790 0.79448 0.79593 0.77876 1.19608 1.20792 1.20373 1.21442 0.96402 0.94275 1.01303 1.22104 0.98483 0.91991 0.92189 0.82043 0.81472 0.83279 0.93041 0.89851 0.92070 0.94201 0.97866 0.93030 0.96231 0.91451 0.93676 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.24 18.54 19.01 0.35 -15.88 16 2 C 0.29 8.54 14.81 88.33 1.31 9.85 16 3 C -0.01 -0.34 5.76 -21.16 -0.12 -0.46 16 4 C -0.05 -0.78 9.53 22.55 0.21 -0.57 16 5 C -0.04 -0.65 6.31 22.29 0.14 -0.51 16 6 Cl -0.05 -0.68 28.94 -2.72 -0.08 -0.76 16 7 C -0.05 -0.73 9.81 22.32 0.22 -0.51 16 8 C -0.14 -2.50 8.67 22.37 0.19 -2.31 16 9 C 0.14 3.50 4.67 38.66 0.18 3.68 16 10 N -0.53 -16.79 3.99 -694.56 -2.77 -19.56 16 11 C 0.07 2.30 5.11 86.32 0.44 2.74 16 12 C -0.10 -4.05 5.32 30.65 0.16 -3.88 16 13 C 0.05 2.28 2.16 -11.46 -0.02 2.26 16 14 C -0.54 -29.57 8.56 25.60 0.22 -29.35 16 15 H 0.05 2.55 7.74 -2.91 -0.02 2.53 16 16 C 0.02 0.92 5.31 84.65 0.45 1.37 16 17 N -0.91 -51.71 11.37 21.45 0.24 -51.47 16 18 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 C -0.10 -4.47 5.12 30.65 0.16 -4.31 16 23 C 0.08 2.78 5.16 86.33 0.45 3.22 16 24 H 0.16 2.08 8.06 -2.92 -0.02 2.05 16 25 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 26 H 0.15 2.58 7.12 -2.91 -0.02 2.56 16 27 H 0.05 1.46 7.34 -2.39 -0.02 1.44 16 28 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 3.53 6.17 -2.39 -0.01 3.51 16 35 H 0.05 1.51 7.53 -2.39 -0.02 1.49 16 36 H 0.07 2.29 8.10 -2.39 -0.02 2.27 16 Total: -1.00 -63.08 319.11 4.85 -58.23 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 1.09 Total: 2.33 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 3.99 Total: -18.78 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.18 Total: -86.91 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -63.08 4.85 -58.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336506339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.002 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.82 seconds