Wall clock time and date at job start Tue Mar 31 2020 08:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28785 * 125.45109 * 2 1 4 4 N 1.28996 * 108.72566 * 180.02562 * 3 2 1 5 5 C 1.33313 * 107.35502 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.54992 * 180.02562 * 5 4 3 7 7 S 1.81397 * 109.47484 * 90.02261 * 6 5 4 8 8 C 1.81403 * 103.00082 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46787 * 180.02562 * 8 7 6 10 10 C 1.38633 * 119.74564 * 269.72649 * 9 8 7 11 11 C 1.37619 * 120.24817 * 179.72616 * 10 9 8 12 12 C 1.40724 * 119.74092 * 0.56782 * 11 10 9 13 13 C 1.41395 * 120.24277 * 179.68259 * 12 11 10 14 14 H 1.07991 * 120.00031 * 204.40118 * 13 12 11 15 15 C 1.39952 * 119.99990 * 24.40361 * 13 12 11 16 16 N 1.30820 * 120.00058 * 17.85396 * 15 13 12 17 17 Si 1.86801 * 119.99878 * 197.85899 * 15 13 12 18 18 H 1.48498 * 109.47089 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47359 * 119.99680 * 17 15 13 20 20 H 1.48499 * 109.46761 * 239.99738 * 17 15 13 21 21 C 1.40714 * 119.51027 * 359.70268 * 12 11 10 22 22 C 1.37611 * 119.74613 * 0.02562 * 21 12 11 23 23 N 1.28885 * 125.44694 * 180.33884 * 2 1 3 24 24 H 1.08998 * 109.47499 * 89.97316 * 1 2 3 25 25 H 1.08997 * 109.47281 * 209.97721 * 1 2 3 26 26 H 1.09003 * 109.47268 * 329.98009 * 1 2 3 27 27 H 1.08997 * 109.47101 * 330.01982 * 6 5 4 28 28 H 1.08997 * 109.46983 * 210.02630 * 6 5 4 29 29 H 1.08997 * 109.46846 * 299.99674 * 8 7 6 30 30 H 1.09000 * 109.46802 * 59.99937 * 8 7 6 31 31 H 1.08001 * 119.87638 * 359.97438 * 10 9 8 32 32 H 1.07999 * 120.13182 * 180.27638 * 11 10 9 33 33 H 0.96997 * 120.00450 * 180.02562 * 16 15 13 34 34 H 1.07994 * 120.12508 * 179.97438 * 21 12 11 35 35 H 1.08003 * 119.87706 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6779 -0.0005 5 6 3.4620 -0.6552 -0.0003 6 6 4.6824 -1.5393 -0.0002 7 16 5.1718 -1.8943 1.7100 8 6 6.6320 -2.9511 1.5056 9 6 7.1653 -3.3385 2.8608 10 6 8.1187 -2.5434 3.4778 11 6 8.6087 -2.8844 4.7178 12 6 8.1471 -4.0516 5.3540 13 6 8.6482 -4.4156 6.6250 14 1 8.6216 -5.4481 6.9405 15 6 9.1787 -3.4379 7.4743 16 7 8.9067 -2.1750 7.2681 17 14 10.2752 -3.9361 8.9022 18 1 10.4270 -5.4133 8.9177 19 1 11.6092 -3.3027 8.7464 20 1 9.6606 -3.4886 10.1778 21 6 7.1834 -4.8541 4.7157 22 6 6.7034 -4.4906 3.4782 23 7 2.2124 -1.0499 -0.0062 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5141 27 1 5.4988 -1.0316 -0.5139 28 1 4.4546 -2.4730 -0.5143 29 1 6.3558 -3.8496 0.9538 30 1 7.3995 -2.4076 0.9544 31 1 8.4753 -1.6508 2.9853 32 1 9.3481 -2.2612 5.1987 33 1 9.2746 -1.4972 7.8565 34 1 6.8225 -5.7521 5.1947 35 1 5.9640 -5.1051 2.9862 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342056269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:55 Heat of formation + Delta-G solvation = 140.807583 kcal Electronic energy + Delta-G solvation = -18869.305817 eV Core-core repulsion = 15803.353826 eV Total energy + Delta-G solvation = -3065.951990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.43245 -37.64544 -35.48060 -34.03433 -33.69084 -31.26314 -30.35433 -29.33684 -27.94358 -27.43597 -24.02357 -23.24576 -22.50403 -21.04378 -20.06792 -17.73649 -17.65584 -17.35769 -16.02026 -15.35406 -14.97104 -14.47447 -14.32800 -14.06794 -13.98597 -13.81365 -13.49741 -13.23888 -13.11471 -12.58022 -12.13446 -11.98506 -11.91699 -11.59401 -11.14544 -11.09679 -11.07564 -11.02032 -10.70958 -10.53450 -10.19790 -9.72914 -9.50288 -9.43634 -9.16035 -7.52043 -7.34198 -7.24286 -6.83465 -4.40793 1.03019 1.43909 1.79620 2.38731 2.77791 2.96470 3.03873 3.06009 3.09891 3.35428 3.71278 3.88030 4.06653 4.51409 4.57888 4.58966 4.82160 5.17005 5.29737 5.57164 5.57821 5.61722 5.65836 5.76976 5.98597 6.13325 6.31141 6.36083 6.91225 7.00330 7.21770 7.29847 7.55621 7.78429 7.99316 8.04538 8.22723 8.24552 8.57387 8.81699 8.90289 10.09969 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030799 B = 0.002782 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.887887 B =10060.669546 C =10318.908626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.144 5.144 3 N -0.065 5.065 4 N -0.270 5.270 5 C 0.193 3.807 6 C -0.010 4.010 7 S -0.245 6.245 8 C -0.003 4.003 9 C -0.213 4.213 10 C -0.077 4.077 11 C -0.169 4.169 12 C 0.117 3.883 13 C -0.454 4.454 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.783 5.783 17 Si 0.909 3.091 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.229 4.229 22 C -0.065 4.065 23 N -0.297 5.297 24 H 0.100 0.900 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.282 0.718 34 H 0.094 0.906 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.254 2.415 -12.311 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.056 5.056 3 N -0.058 5.058 4 N -0.142 5.142 5 C -0.090 4.090 6 C -0.160 4.160 7 S -0.015 6.015 8 C -0.149 4.149 9 C -0.217 4.217 10 C -0.097 4.097 11 C -0.188 4.188 12 C 0.113 3.887 13 C -0.484 4.484 14 H 0.098 0.902 15 C -0.145 4.145 16 N -0.408 5.408 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.249 4.249 22 C -0.085 4.085 23 N -0.149 5.149 24 H 0.118 0.882 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.185 3.615 -11.383 17.062 hybrid contribution 1.043 -0.874 -0.371 1.410 sum -11.142 2.741 -11.754 16.426 Atomic orbital electron populations 1.22412 0.69203 1.06953 1.05829 1.50015 1.10687 1.00976 1.43934 1.78960 0.96515 1.14379 1.15990 1.75860 1.09699 1.10954 1.17714 1.24619 0.92262 0.90261 1.01811 1.21451 0.93230 0.99635 1.01683 1.87856 1.40023 1.67670 1.05977 1.22074 0.94542 0.98648 0.99645 1.18363 1.06500 1.00240 0.96607 1.20542 0.96673 0.96997 0.95462 1.21299 1.03293 1.00260 0.93968 1.17689 0.88142 0.90775 0.92055 1.19711 1.34004 0.95352 0.99286 0.90169 1.25976 0.94883 0.94418 0.99202 1.69837 1.34058 1.01476 1.35424 0.86247 0.80011 0.80298 0.80138 1.18302 1.19583 1.19906 1.20952 1.03243 1.03305 0.97354 1.20376 0.97711 0.95424 0.95018 1.74710 1.03139 1.15021 1.22030 0.88154 0.87073 0.86963 0.87350 0.87737 0.90912 0.90769 0.89157 0.86288 0.90671 0.88811 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.63 59.84 0.70 1.17 16 2 N -0.14 -1.67 4.40 -16.70 -0.07 -1.75 16 3 N -0.06 -0.91 13.25 60.35 0.80 -0.11 16 4 N -0.27 -4.33 12.50 32.45 0.41 -3.93 16 5 C 0.19 2.90 7.63 -156.63 -1.19 1.70 16 6 C -0.01 -0.13 6.57 36.01 0.24 0.10 16 7 S -0.24 -4.35 21.70 -107.50 -2.33 -6.68 16 8 C 0.00 -0.04 6.06 36.01 0.22 0.17 16 9 C -0.21 -4.56 5.16 -104.33 -0.54 -5.10 16 10 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 11 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 12 C 0.12 3.08 5.58 -106.82 -0.60 2.48 16 13 C -0.45 -11.85 9.05 -37.74 -0.34 -12.19 16 14 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 15 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 16 N -0.78 -20.09 10.95 55.55 0.61 -19.48 16 17 Si 0.91 18.30 29.60 -169.99 -5.03 13.27 16 18 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 C -0.23 -5.55 9.80 -38.88 -0.38 -5.93 16 22 C -0.07 -1.44 9.67 -39.66 -0.38 -1.82 16 23 N -0.30 -4.13 12.13 32.46 0.39 -3.73 16 24 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.07 1.16 8.08 -51.92 -0.42 0.74 16 31 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 32 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16 33 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 34 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 323.90 15.07 4.88 4.88 Total: -1.00 -31.22 323.90 -7.54 -38.75 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -4.09 Total: 3.27 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -3.09 Total: -24.50 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 2.13 Total: -28.99 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -2.33 Total: -6.68 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.22 -7.54 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342056269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.561 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds