Wall clock time and date at job start Tue Mar 31 2020 08:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28785 * 125.45109 * 2 1 4 4 N 1.28996 * 108.72566 * 180.02562 * 3 2 1 5 5 C 1.33313 * 107.35502 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.54992 * 180.02562 * 5 4 3 7 7 S 1.81397 * 109.47484 * 90.02261 * 6 5 4 8 8 C 1.81403 * 103.00082 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46787 * 180.02562 * 8 7 6 10 10 C 1.38633 * 119.74564 * 269.72649 * 9 8 7 11 11 C 1.37619 * 120.24817 * 179.72616 * 10 9 8 12 12 C 1.40724 * 119.74092 * 0.56782 * 11 10 9 13 13 C 1.41395 * 120.24277 * 179.68259 * 12 11 10 14 14 H 1.07991 * 120.00031 * 204.40118 * 13 12 11 15 15 C 1.39952 * 119.99990 * 24.40361 * 13 12 11 16 16 N 1.30820 * 120.00058 * 17.85396 * 15 13 12 17 17 Si 1.86801 * 119.99878 * 197.85899 * 15 13 12 18 18 H 1.48498 * 109.47089 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47359 * 119.99680 * 17 15 13 20 20 H 1.48499 * 109.46761 * 239.99738 * 17 15 13 21 21 C 1.40714 * 119.51027 * 359.70268 * 12 11 10 22 22 C 1.37611 * 119.74613 * 0.02562 * 21 12 11 23 23 N 1.28885 * 125.44694 * 180.33884 * 2 1 3 24 24 H 1.08998 * 109.47499 * 89.97316 * 1 2 3 25 25 H 1.08997 * 109.47281 * 209.97721 * 1 2 3 26 26 H 1.09003 * 109.47268 * 329.98009 * 1 2 3 27 27 H 1.08997 * 109.47101 * 330.01982 * 6 5 4 28 28 H 1.08997 * 109.46983 * 210.02630 * 6 5 4 29 29 H 1.08997 * 109.46846 * 299.99674 * 8 7 6 30 30 H 1.09000 * 109.46802 * 59.99937 * 8 7 6 31 31 H 1.08001 * 119.87638 * 359.97438 * 10 9 8 32 32 H 1.07999 * 120.13182 * 180.27638 * 11 10 9 33 33 H 0.96997 * 120.00450 * 180.02562 * 16 15 13 34 34 H 1.07994 * 120.12508 * 179.97438 * 21 12 11 35 35 H 1.08003 * 119.87706 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6779 -0.0005 5 6 3.4620 -0.6552 -0.0003 6 6 4.6824 -1.5393 -0.0002 7 16 5.1718 -1.8943 1.7100 8 6 6.6320 -2.9511 1.5056 9 6 7.1653 -3.3385 2.8608 10 6 8.1187 -2.5434 3.4778 11 6 8.6087 -2.8844 4.7178 12 6 8.1471 -4.0516 5.3540 13 6 8.6482 -4.4156 6.6250 14 1 8.6216 -5.4481 6.9405 15 6 9.1787 -3.4379 7.4743 16 7 8.9067 -2.1750 7.2681 17 14 10.2752 -3.9361 8.9022 18 1 10.4270 -5.4133 8.9177 19 1 11.6092 -3.3027 8.7464 20 1 9.6606 -3.4886 10.1778 21 6 7.1834 -4.8541 4.7157 22 6 6.7034 -4.4906 3.4782 23 7 2.2124 -1.0499 -0.0062 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5141 27 1 5.4988 -1.0316 -0.5139 28 1 4.4546 -2.4730 -0.5143 29 1 6.3558 -3.8496 0.9538 30 1 7.3995 -2.4076 0.9544 31 1 8.4753 -1.6508 2.9853 32 1 9.3481 -2.2612 5.1987 33 1 9.2746 -1.4972 7.8565 34 1 6.8225 -5.7521 5.1947 35 1 5.9640 -5.1051 2.9862 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342056269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:52 Heat of formation + Delta-G solvation = 122.587340 kcal Electronic energy + Delta-G solvation = -18870.095906 eV Core-core repulsion = 15803.353826 eV Total energy + Delta-G solvation = -3066.742080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.43605 -39.46306 -36.37423 -35.84472 -34.72836 -33.00219 -31.22690 -31.17533 -29.32999 -28.62340 -25.75267 -24.17590 -23.56371 -22.89605 -21.84379 -19.23513 -18.65557 -18.55515 -17.40854 -17.08640 -16.07152 -15.95085 -15.67150 -15.62401 -15.35862 -14.94098 -14.45701 -14.33503 -14.15667 -13.90289 -13.80992 -13.50441 -13.28995 -12.93173 -12.86180 -12.72659 -12.38634 -12.15949 -12.12456 -12.03073 -11.52135 -11.40561 -11.28493 -10.97618 -10.70696 -9.36912 -9.18279 -8.66008 -8.62101 -6.34242 -0.03916 0.24831 0.91586 1.08458 1.15923 1.36104 1.39217 1.53864 1.62025 1.82206 2.20209 2.70551 2.77201 3.15486 3.75662 3.96509 4.14680 4.20047 4.20897 4.23010 4.37064 4.51081 4.54361 4.58319 4.62397 4.73662 4.74949 5.05382 5.14394 5.15499 5.35849 5.44325 5.69710 5.94215 6.09393 6.19749 6.36796 6.68756 6.91999 7.01696 7.21701 8.30527 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030799 B = 0.002782 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.887887 B =10060.669546 C =10318.908626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.126 5.126 3 N -0.078 5.078 4 N -0.303 5.303 5 C 0.177 3.823 6 C 0.011 3.989 7 S -0.297 6.297 8 C 0.007 3.993 9 C -0.201 4.201 10 C -0.084 4.084 11 C -0.194 4.194 12 C 0.084 3.916 13 C -0.495 4.495 14 H 0.078 0.922 15 C 0.033 3.967 16 N -0.822 5.822 17 Si 0.984 3.016 18 H -0.256 1.256 19 H -0.263 1.263 20 H -0.266 1.266 21 C -0.246 4.246 22 C -0.068 4.068 23 N -0.304 5.304 24 H 0.130 0.870 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.289 0.711 34 H 0.099 0.901 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 2.169 -14.063 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.041 5.041 3 N -0.071 5.071 4 N -0.175 5.175 5 C -0.106 4.106 6 C -0.139 4.139 7 S -0.069 6.069 8 C -0.140 4.140 9 C -0.205 4.205 10 C -0.104 4.104 11 C -0.213 4.213 12 C 0.081 3.919 13 C -0.524 4.524 14 H 0.096 0.904 15 C -0.182 4.182 16 N -0.447 5.447 17 Si 0.804 3.196 18 H -0.180 1.180 19 H -0.188 1.188 20 H -0.191 1.191 21 C -0.265 4.265 22 C -0.088 4.088 23 N -0.157 5.157 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.575 3.365 -13.130 19.184 hybrid contribution 1.175 -0.726 -0.088 1.384 sum -12.400 2.639 -13.219 18.316 Atomic orbital electron populations 1.23086 0.65763 1.08828 1.08349 1.50605 1.12376 0.99936 1.41187 1.78881 0.96402 1.15072 1.16756 1.75815 1.10857 1.11727 1.19052 1.24816 0.92997 0.90194 1.02577 1.21452 0.93459 1.00934 0.98082 1.87970 1.40300 1.68068 1.10548 1.22010 0.94670 1.00026 0.97286 1.18762 1.04737 0.99021 0.97938 1.20791 0.97008 0.97789 0.94790 1.21271 1.04100 1.00625 0.95352 1.18027 0.89322 0.91715 0.92862 1.19929 1.36573 0.95709 1.00218 0.90421 1.26824 0.95595 0.94077 1.01716 1.69893 1.35303 1.02561 1.36992 0.85136 0.77976 0.79902 0.76564 1.17974 1.18781 1.19123 1.21171 1.03267 1.03525 0.98575 1.20710 0.97803 0.95951 0.94326 1.74677 1.03045 1.15825 1.22139 0.85231 0.85496 0.84883 0.85615 0.85149 0.88062 0.88768 0.87568 0.88153 0.90053 0.88320 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.63 127.77 1.49 2.01 16 2 N -0.13 -2.64 4.40 -206.74 -0.91 -3.55 16 3 N -0.08 -2.07 13.25 37.02 0.49 -1.58 16 4 N -0.30 -9.34 12.50 -51.26 -0.64 -9.98 16 5 C 0.18 4.95 7.63 138.55 1.06 6.00 16 6 C 0.01 0.26 6.57 71.24 0.47 0.73 16 7 S -0.30 -9.91 21.70 -56.49 -1.23 -11.14 16 8 C 0.01 0.21 6.06 71.24 0.43 0.64 16 9 C -0.20 -8.35 5.16 -19.67 -0.10 -8.45 16 10 C -0.08 -3.89 9.67 22.22 0.21 -3.68 16 11 C -0.19 -10.36 8.70 22.73 0.20 -10.16 16 12 C 0.08 4.59 5.58 -21.29 -0.12 4.47 16 13 C -0.49 -26.99 9.05 23.46 0.21 -26.77 16 14 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 15 C 0.03 1.69 5.14 85.26 0.44 2.13 16 16 N -0.82 -43.87 10.95 21.83 0.24 -43.63 16 17 Si 0.98 38.46 29.60 68.60 2.03 40.49 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 20 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 21 C -0.25 -12.14 9.80 22.73 0.22 -11.91 16 22 C -0.07 -2.93 9.67 22.22 0.21 -2.72 16 23 N -0.30 -7.73 12.13 -51.20 -0.62 -8.35 16 24 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 25 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.10 2.64 8.08 -2.39 -0.02 2.62 16 30 H 0.09 2.61 8.08 -2.39 -0.02 2.59 16 31 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 33 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 34 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -70.61 323.90 5.19 -65.42 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 1.10 Total: 20.03 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 4.72 Total: -47.71 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -1.44 Total: -67.09 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Atomic # 16 Polarization: -9.91 SS G_CDS: -1.23 Total: -11.14 kcal Total: -70.61 5.19 -65.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342056269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.008 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds