Wall clock time and date at job start Tue Mar 31 2020 08:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37304 * 126.01744 * 2 1 4 4 N 1.31050 * 126.55634 * 359.97438 * 3 2 1 5 5 N 1.36709 * 106.88155 * 179.97438 * 3 2 1 6 6 H 0.96996 * 126.35324 * 179.97438 * 5 3 2 7 7 N 1.40116 * 107.30607 * 0.02562 * 5 3 2 8 8 C 1.29962 * 108.68944 * 359.71735 * 7 5 3 9 9 S 1.76196 * 125.42625 * 180.26488 * 8 7 5 10 10 C 1.81003 * 99.99995 * 0.21342 * 9 8 7 11 11 C 1.50700 * 109.47316 * 180.02562 * 10 9 8 12 12 C 1.38630 * 119.74867 * 269.72831 * 11 10 9 13 13 C 1.37617 * 120.24669 * 179.72038 * 12 11 10 14 14 C 1.40708 * 119.74576 * 0.57026 * 13 12 11 15 15 C 1.41399 * 120.24610 * 179.68147 * 14 13 12 16 16 H 1.08001 * 119.99948 * 24.41106 * 15 14 13 17 17 C 1.39943 * 120.00039 * 204.41106 * 15 14 13 18 18 N 1.30825 * 119.99895 * 17.85442 * 17 15 14 19 19 Si 1.86805 * 120.00199 * 197.85624 * 17 15 14 20 20 H 1.48498 * 109.46921 * 89.99783 * 19 17 15 21 21 H 1.48495 * 109.47411 * 210.00001 * 19 17 15 22 22 H 1.48501 * 109.46684 * 330.00364 * 19 17 15 23 23 C 1.40716 * 119.51142 * 359.70247 * 14 13 12 24 24 C 1.37614 * 119.74686 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.46605 * 90.02255 * 1 2 3 26 26 H 1.09001 * 109.47253 * 210.02154 * 1 2 3 27 27 H 1.08996 * 109.47016 * 330.02396 * 1 2 3 28 28 H 0.97005 * 119.99712 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46773 * 299.99958 * 10 9 8 30 30 H 1.08995 * 109.46877 * 59.99705 * 10 9 8 31 31 H 1.08001 * 119.87715 * 359.97438 * 12 11 10 32 32 H 1.08001 * 120.12483 * 180.27895 * 13 12 11 33 33 H 0.97002 * 119.99815 * 180.02562 * 18 17 15 34 34 H 1.07998 * 120.12934 * 179.97438 * 23 14 13 35 35 H 1.08000 * 119.87992 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2724 1.1106 0.0000 4 7 1.8800 2.3609 -0.0005 5 7 3.5640 0.6624 0.0006 6 1 4.3632 1.2120 0.0004 7 7 3.5192 -0.7380 0.0003 8 6 2.2755 -1.1150 0.0057 9 16 1.7145 -2.7852 0.0143 10 6 3.3042 -3.6507 0.0196 11 6 3.0661 -5.1387 0.0267 12 6 2.9622 -5.8130 1.2336 13 6 2.7391 -7.1708 1.2521 14 6 2.6283 -7.8767 0.0399 15 6 2.4058 -9.2730 0.0466 16 1 1.9385 -9.7413 0.9003 17 6 2.7910 -10.0482 -1.0530 18 7 3.6507 -9.5748 -1.9180 19 14 2.0776 -11.7590 -1.2856 20 1 0.8368 -11.6717 -2.0968 21 1 3.0671 -12.6170 -1.9854 22 1 1.7617 -12.3479 0.0405 23 6 2.7411 -7.1828 -1.1791 24 6 2.9586 -5.8240 -1.1737 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 2.5363 3.0752 0.0000 29 1 3.8694 -3.3778 -0.8716 30 1 3.8686 -3.3684 0.9083 31 1 3.0527 -5.2699 2.1627 32 1 2.6540 -7.6933 2.1934 33 1 3.9174 -10.1120 -2.6804 34 1 2.6581 -7.7147 -2.1153 35 1 3.0459 -5.2893 -2.1080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342512158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:02 Heat of formation + Delta-G solvation = 109.042138 kcal Electronic energy + Delta-G solvation = -19196.647706 eV Core-core repulsion = 16129.318262 eV Total energy + Delta-G solvation = -3067.329444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.65676 -37.77770 -34.62982 -34.16561 -34.09916 -31.41328 -29.55136 -29.43625 -27.66122 -27.10371 -24.15134 -23.34455 -21.18234 -21.03814 -20.14800 -18.62656 -17.46413 -16.40127 -16.19403 -15.94810 -15.50288 -15.45318 -14.49876 -14.14260 -14.08962 -13.73602 -13.36657 -12.80583 -12.66861 -12.40848 -12.10107 -11.76833 -11.70070 -11.41554 -11.22580 -11.16382 -10.89446 -10.60722 -10.43029 -10.32111 -9.81441 -9.63783 -9.55023 -9.27438 -8.20192 -7.63719 -7.48021 -7.38401 -6.94771 -4.52096 1.08817 1.88115 1.94371 2.31150 2.58462 2.80447 2.94239 2.99079 3.01734 3.21083 3.58544 3.80020 4.46900 4.65538 4.80348 5.22353 5.42868 5.49322 5.52211 5.58354 5.64344 5.91606 6.12695 6.18877 6.25217 6.65734 6.81063 6.86374 6.89776 7.09490 7.17771 7.43994 7.65980 7.70404 7.88454 7.91545 8.11203 8.33966 8.46042 8.70427 8.78343 9.98443 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.045579 B = 0.002891 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.164634 B = 9681.494134 C = 9781.561009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.523 5.523 3 C 0.580 3.420 4 N -0.800 5.800 5 N -0.582 5.582 6 H 0.445 0.555 7 N -0.303 5.303 8 C 0.266 3.734 9 S -0.013 6.013 10 C -0.018 4.018 11 C -0.224 4.224 12 C -0.062 4.062 13 C -0.228 4.228 14 C 0.119 3.881 15 C -0.450 4.450 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.782 5.782 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.168 4.168 24 C -0.075 4.075 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.344 0.656 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.284 0.716 34 H 0.120 0.880 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 11.179 1.325 11.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.239 5.239 3 C 0.211 3.789 4 N -0.455 5.455 5 N -0.320 5.320 6 H 0.292 0.708 7 N -0.130 5.130 8 C -0.119 4.119 9 S 0.219 5.781 10 C -0.165 4.165 11 C -0.230 4.230 12 C -0.082 4.082 13 C -0.248 4.248 14 C 0.116 3.884 15 C -0.479 4.479 16 H 0.100 0.900 17 C -0.145 4.145 18 N -0.406 5.406 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.184 1.184 23 C -0.188 4.188 24 C -0.095 4.095 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.161 0.839 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.698 10.847 1.103 11.513 hybrid contribution 1.800 0.473 -0.209 1.873 sum -1.898 11.320 0.894 11.513 Atomic orbital electron populations 1.21807 0.73762 1.04531 1.03460 1.44494 1.07433 1.01792 1.70143 1.19926 0.79861 0.88495 0.90610 1.69990 1.37516 0.94467 1.43483 1.46790 1.06806 1.03538 1.74902 0.70782 1.77144 1.15475 0.92372 1.27993 1.26696 0.88540 0.96668 1.00037 1.86546 1.16929 0.83542 1.91055 1.22265 0.92737 0.95900 1.05607 1.18353 1.20449 0.89887 0.94314 1.20408 0.98229 0.94405 0.95196 1.20958 1.12873 0.93789 0.97159 1.17709 0.86598 0.93129 0.91010 1.19738 1.33918 0.92327 1.01965 0.90017 1.25995 0.92832 1.00984 0.94694 1.69818 1.21710 1.38458 1.10592 0.86254 0.79690 0.80813 0.79729 1.19056 1.20167 1.18443 1.21309 1.06458 0.92275 0.98780 1.20555 0.99027 0.94777 0.95150 0.91094 0.89525 0.89017 0.83855 0.89477 0.89559 0.89015 0.88625 0.90494 0.86207 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.10 10.90 59.85 0.65 1.75 16 2 N -0.52 -7.12 3.22 -125.26 -0.40 -7.53 16 3 C 0.58 8.02 9.09 -320.56 -2.91 5.11 16 4 N -0.80 -10.72 14.04 30.08 0.42 -10.30 16 5 N -0.58 -7.54 7.47 30.07 0.22 -7.31 16 6 H 0.45 4.35 8.96 -182.59 -1.64 2.72 16 7 N -0.30 -4.60 11.90 30.72 0.37 -4.23 16 8 C 0.27 3.94 8.02 -88.20 -0.71 3.23 16 9 S -0.01 -0.19 21.57 -107.50 -2.32 -2.51 16 10 C -0.02 -0.30 5.29 36.01 0.19 -0.11 16 11 C -0.22 -4.44 5.16 -104.33 -0.54 -4.98 16 12 C -0.06 -1.27 9.67 -39.66 -0.38 -1.65 16 13 C -0.23 -5.16 9.80 -38.88 -0.38 -5.55 16 14 C 0.12 2.95 5.58 -106.83 -0.60 2.35 16 15 C -0.45 -11.13 9.05 -37.74 -0.34 -11.47 16 16 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 17 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 18 N -0.78 -18.90 10.95 55.55 0.61 -18.30 16 19 Si 0.91 17.44 29.60 -169.99 -5.03 12.41 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 23 C -0.17 -4.06 8.70 -38.87 -0.34 -4.39 16 24 C -0.07 -1.60 9.67 -39.66 -0.38 -1.98 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.79 7.69 -51.93 -0.40 0.40 16 27 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 28 H 0.34 3.91 8.92 -40.82 -0.36 3.54 16 29 H 0.09 1.42 8.08 -51.91 -0.42 1.00 16 30 H 0.09 1.38 8.08 -51.92 -0.42 0.96 16 31 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.28 6.22 8.30 -40.82 -0.34 5.89 16 34 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 35 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -27.00 320.65 -12.35 -39.36 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.22 Total: 9.62 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -5.83 Total: -16.04 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 1.22 Total: -47.67 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.32 Total: -2.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.00 -12.35 -39.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342512158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.398 kcal (2) G-P(sol) polarization free energy of solvation -27.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds