Wall clock time and date at job start Tue Mar 31 2020 08:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37304 * 126.01744 * 2 1 4 4 N 1.31050 * 126.55634 * 359.97438 * 3 2 1 5 5 N 1.36709 * 106.88155 * 179.97438 * 3 2 1 6 6 H 0.96996 * 126.35324 * 179.97438 * 5 3 2 7 7 N 1.40116 * 107.30607 * 0.02562 * 5 3 2 8 8 C 1.29962 * 108.68944 * 359.71735 * 7 5 3 9 9 S 1.76196 * 125.42625 * 180.26488 * 8 7 5 10 10 C 1.81003 * 99.99995 * 0.21342 * 9 8 7 11 11 C 1.50700 * 109.47316 * 180.02562 * 10 9 8 12 12 C 1.38630 * 119.74867 * 269.72831 * 11 10 9 13 13 C 1.37617 * 120.24669 * 179.72038 * 12 11 10 14 14 C 1.40708 * 119.74576 * 0.57026 * 13 12 11 15 15 C 1.41399 * 120.24610 * 179.68147 * 14 13 12 16 16 H 1.08001 * 119.99948 * 24.41106 * 15 14 13 17 17 C 1.39943 * 120.00039 * 204.41106 * 15 14 13 18 18 N 1.30825 * 119.99895 * 17.85442 * 17 15 14 19 19 Si 1.86805 * 120.00199 * 197.85624 * 17 15 14 20 20 H 1.48498 * 109.46921 * 89.99783 * 19 17 15 21 21 H 1.48495 * 109.47411 * 210.00001 * 19 17 15 22 22 H 1.48501 * 109.46684 * 330.00364 * 19 17 15 23 23 C 1.40716 * 119.51142 * 359.70247 * 14 13 12 24 24 C 1.37614 * 119.74686 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.46605 * 90.02255 * 1 2 3 26 26 H 1.09001 * 109.47253 * 210.02154 * 1 2 3 27 27 H 1.08996 * 109.47016 * 330.02396 * 1 2 3 28 28 H 0.97005 * 119.99712 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46773 * 299.99958 * 10 9 8 30 30 H 1.08995 * 109.46877 * 59.99705 * 10 9 8 31 31 H 1.08001 * 119.87715 * 359.97438 * 12 11 10 32 32 H 1.08001 * 120.12483 * 180.27895 * 13 12 11 33 33 H 0.97002 * 119.99815 * 180.02562 * 18 17 15 34 34 H 1.07998 * 120.12934 * 179.97438 * 23 14 13 35 35 H 1.08000 * 119.87992 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2724 1.1106 0.0000 4 7 1.8800 2.3609 -0.0005 5 7 3.5640 0.6624 0.0006 6 1 4.3632 1.2120 0.0004 7 7 3.5192 -0.7380 0.0003 8 6 2.2755 -1.1150 0.0057 9 16 1.7145 -2.7852 0.0143 10 6 3.3042 -3.6507 0.0196 11 6 3.0661 -5.1387 0.0267 12 6 2.9622 -5.8130 1.2336 13 6 2.7391 -7.1708 1.2521 14 6 2.6283 -7.8767 0.0399 15 6 2.4058 -9.2730 0.0466 16 1 1.9385 -9.7413 0.9003 17 6 2.7910 -10.0482 -1.0530 18 7 3.6507 -9.5748 -1.9180 19 14 2.0776 -11.7590 -1.2856 20 1 0.8368 -11.6717 -2.0968 21 1 3.0671 -12.6170 -1.9854 22 1 1.7617 -12.3479 0.0405 23 6 2.7411 -7.1828 -1.1791 24 6 2.9586 -5.8240 -1.1737 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 2.5363 3.0752 0.0000 29 1 3.8694 -3.3778 -0.8716 30 1 3.8686 -3.3684 0.9083 31 1 3.0527 -5.2699 2.1627 32 1 2.6540 -7.6933 2.1934 33 1 3.9174 -10.1120 -2.6804 34 1 2.6581 -7.7147 -2.1153 35 1 3.0459 -5.2893 -2.1080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342512158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:00 Heat of formation + Delta-G solvation = 97.801409 kcal Electronic energy + Delta-G solvation = -19197.135140 eV Core-core repulsion = 16129.318262 eV Total energy + Delta-G solvation = -3067.816878 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.71239 -39.48273 -35.88854 -35.58617 -35.17976 -33.05239 -31.18569 -30.61499 -29.24768 -28.04187 -25.78256 -24.47129 -22.89984 -22.24682 -21.65597 -19.71036 -19.22355 -17.56667 -17.23791 -17.18818 -16.97196 -16.47706 -16.03338 -15.69058 -15.64481 -15.21505 -14.29099 -14.24520 -13.89274 -13.78388 -13.65300 -13.42812 -12.87280 -12.74560 -12.73084 -12.56705 -12.43324 -12.13714 -11.74503 -11.48659 -11.39787 -11.26494 -10.98466 -10.67567 -9.38870 -9.27729 -9.20739 -8.66209 -8.50568 -6.33903 -0.13963 0.74274 0.75201 1.05150 1.17440 1.36776 1.41634 1.53525 1.54349 1.66975 2.21256 2.58059 2.74847 3.65489 3.75842 3.87536 4.09374 4.12166 4.46169 4.54092 4.55946 4.61744 4.76867 4.78373 4.94470 5.07653 5.15419 5.35874 5.43854 5.69623 5.70130 5.89788 5.93548 6.10413 6.18164 6.37137 6.68141 6.69169 6.92737 7.01580 7.36821 8.29867 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.045579 B = 0.002891 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.164634 B = 9681.494134 C = 9781.561009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.525 5.525 3 C 0.570 3.430 4 N -0.805 5.805 5 N -0.573 5.573 6 H 0.457 0.543 7 N -0.319 5.319 8 C 0.258 3.742 9 S 0.020 5.980 10 C -0.021 4.021 11 C -0.209 4.209 12 C -0.064 4.064 13 C -0.243 4.243 14 C 0.088 3.912 15 C -0.492 4.492 16 H 0.078 0.922 17 C 0.036 3.964 18 N -0.818 5.818 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.192 4.192 24 C -0.079 4.079 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.354 0.646 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.290 0.710 34 H 0.102 0.898 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 12.822 1.642 13.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.241 5.241 3 C 0.201 3.799 4 N -0.461 5.461 5 N -0.314 5.314 6 H 0.306 0.694 7 N -0.146 5.146 8 C -0.128 4.128 9 S 0.251 5.749 10 C -0.168 4.168 11 C -0.214 4.214 12 C -0.084 4.084 13 C -0.263 4.263 14 C 0.084 3.916 15 C -0.521 4.521 16 H 0.096 0.904 17 C -0.180 4.180 18 N -0.443 5.443 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.194 1.194 22 H -0.182 1.182 23 C -0.212 4.212 24 C -0.099 4.099 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.172 0.828 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.174 12.487 1.429 13.244 hybrid contribution 1.959 0.333 -0.262 2.005 sum -2.215 12.821 1.166 13.063 Atomic orbital electron populations 1.22047 0.72168 1.05432 1.04493 1.44721 1.08408 1.01280 1.69678 1.20074 0.80118 0.88735 0.90960 1.69973 1.38182 0.94626 1.43297 1.46830 1.07293 1.02821 1.74475 0.69391 1.77078 1.15843 0.93597 1.28086 1.26537 0.88860 0.96830 1.00569 1.86335 1.13767 0.83482 1.91314 1.22143 0.94340 0.93807 1.06544 1.18615 1.17522 0.91809 0.93418 1.20717 0.97224 0.93718 0.96748 1.21157 1.13336 0.94985 0.96773 1.18032 0.87732 0.93779 0.92015 1.19935 1.36087 0.92995 1.03089 0.90371 1.26764 0.92607 1.04618 0.93992 1.69866 1.22903 1.40150 1.11368 0.85214 0.78912 0.76100 0.79603 1.18661 1.19357 1.18169 1.21269 1.08393 0.93467 0.98032 1.20782 0.98420 0.93980 0.96752 0.90006 0.88412 0.88382 0.82785 0.88947 0.88433 0.86082 0.88158 0.89955 0.88007 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 10.90 127.77 1.39 3.17 16 2 N -0.53 -12.90 3.22 -550.20 -1.77 -14.67 16 3 C 0.57 14.36 9.09 260.70 2.37 16.73 16 4 N -0.81 -19.67 14.04 -58.75 -0.82 -20.50 16 5 N -0.57 -13.48 7.47 -58.78 -0.44 -13.92 16 6 H 0.46 7.90 8.96 -213.32 -1.91 5.98 16 7 N -0.32 -8.84 11.90 -56.74 -0.68 -9.52 16 8 C 0.26 6.93 8.02 179.50 1.44 8.37 16 9 S 0.02 0.55 21.57 -56.49 -1.22 -0.67 16 10 C -0.02 -0.63 5.29 71.24 0.38 -0.26 16 11 C -0.21 -7.96 5.16 -19.67 -0.10 -8.06 16 12 C -0.06 -2.54 9.67 22.22 0.21 -2.32 16 13 C -0.24 -11.12 9.80 22.73 0.22 -10.90 16 14 C 0.09 4.48 5.58 -21.29 -0.12 4.37 16 15 C -0.49 -25.34 9.05 23.46 0.21 -25.13 16 16 H 0.08 3.88 7.91 -2.91 -0.02 3.86 16 17 C 0.04 1.75 5.14 85.26 0.44 2.19 16 18 N -0.82 -41.03 10.95 21.83 0.24 -40.79 16 19 Si 0.98 36.54 29.60 68.60 2.03 38.57 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 21 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 22 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 23 C -0.19 -9.52 8.70 22.73 0.20 -9.32 16 24 C -0.08 -3.37 9.67 22.22 0.21 -3.16 16 25 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.10 1.52 7.69 -2.39 -0.02 1.50 16 27 H 0.10 1.65 8.11 -2.39 -0.02 1.63 16 28 H 0.35 7.24 8.92 -92.70 -0.83 6.41 16 29 H 0.09 2.76 8.08 -2.39 -0.02 2.74 16 30 H 0.10 2.80 8.08 -2.40 -0.02 2.78 16 31 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 32 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 33 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 34 H 0.10 5.34 6.16 -2.91 -0.02 5.32 16 35 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -58.39 320.65 2.60 -55.79 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -1.59 Total: 30.02 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 6.86 Total: -24.32 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -3.47 Total: -99.39 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -1.22 Total: -0.67 kcal Total: -58.39 2.60 -55.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342512158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.587 kcal (2) G-P(sol) polarization free energy of solvation -58.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds