Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1 5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1 6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.36132 * 120.11126 * 259.99845 * 13 12 11 15 15 C 1.39264 * 121.07979 * 179.97438 * 14 13 12 16 16 C 1.36305 * 120.86149 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 120.20721 * 179.97438 * 16 15 14 18 18 C 1.40509 * 119.58406 * 359.97438 * 16 15 14 19 19 C 1.40723 * 121.39099 * 180.02562 * 18 16 15 20 20 C 1.36605 * 118.15158 * 179.13195 * 19 18 16 21 21 C 1.39316 * 119.93658 * 0.82347 * 20 19 18 22 22 N 1.31089 * 121.74610 * 359.43073 * 21 20 19 23 23 C 1.33691 * 121.32092 * 0.02562 * 22 21 20 24 24 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 26 26 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 27 27 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 28 28 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 29 29 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 30 30 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 31 31 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 32 32 H 1.08004 * 119.45661 * 0.02562 * 14 13 12 33 33 H 1.08010 * 119.56839 * 180.02562 * 15 14 13 34 34 H 1.08006 * 120.92373 * 359.95654 * 19 18 16 35 35 H 1.07995 * 120.03159 * 180.23076 * 20 19 18 36 36 H 1.07995 * 119.12826 * 179.45799 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6474 -7.3604 -0.0006 14 6 1.4642 -8.0493 1.1592 15 6 0.7391 -9.2380 1.1825 16 6 0.1922 -9.7458 0.0419 17 17 -0.7080 -11.2295 0.0903 18 6 0.3615 -9.0610 -1.1732 19 6 -0.1871 -9.5505 -2.3731 20 6 0.0029 -8.8220 -3.5130 21 6 0.7377 -7.6393 -3.4679 22 7 1.2520 -7.1890 -2.3493 23 6 1.0939 -7.8480 -1.1969 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.8742 -4.9845 0.7801 30 1 3.0640 -6.0348 -0.8901 31 1 3.0628 -6.0349 0.8899 32 1 1.8874 -7.6671 2.0765 33 1 0.6084 -9.7644 2.1165 34 1 -0.7540 -10.4696 -2.3899 35 1 -0.4081 -9.1675 -4.4501 36 1 0.8873 -7.0782 -4.3785 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344332261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = 39.228394 kcal Electronic energy + Delta-G solvation = -19473.779092 eV Core-core repulsion = 16369.085840 eV Total energy + Delta-G solvation = -3104.693252 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02918 -37.67738 -36.96873 -35.68347 -33.67220 -32.69291 -30.82801 -30.77122 -28.76239 -25.49394 -24.30150 -23.86361 -23.22756 -20.93042 -20.44070 -18.49272 -17.25858 -17.19412 -16.27428 -15.29856 -15.13470 -14.81303 -14.59528 -14.35359 -14.13350 -13.72138 -13.42847 -13.31826 -12.87266 -12.75310 -12.30018 -12.13891 -11.77490 -11.45345 -11.26095 -11.12545 -10.98529 -10.88021 -10.54098 -10.43851 -9.94924 -9.53024 -9.34200 -9.11874 -8.98221 -8.32071 -8.26583 -7.72172 -5.96278 -3.98691 0.14795 0.63236 1.75249 1.79919 2.69929 3.34452 3.40287 3.43487 3.91799 4.18453 4.42145 4.46695 4.52721 4.54682 4.77295 4.82212 5.08866 5.13498 5.21716 5.37141 5.39621 5.52670 5.64677 5.78243 5.82225 5.97530 6.03785 6.21660 6.30939 6.39288 6.50151 6.62034 7.03323 7.51332 7.76642 7.86934 7.89821 8.00508 8.13546 8.47544 9.08756 9.64776 11.15184 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026299 B = 0.003059 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.429698 B = 9151.908029 C = 9638.903179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.069 3.931 11 N -0.677 5.677 12 C 0.104 3.896 13 C -0.035 4.035 14 C -0.101 4.101 15 C -0.097 4.097 16 C -0.024 4.024 17 Cl -0.067 7.067 18 C -0.099 4.099 19 C -0.064 4.064 20 C -0.168 4.168 21 C 0.131 3.869 22 N -0.439 5.439 23 C 0.154 3.846 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.012 0.988 27 H 0.014 0.986 28 H 0.060 0.940 29 H 0.333 0.667 30 H 0.087 0.913 31 H 0.033 0.967 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -24.058 -2.012 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.059 4.059 11 N -0.307 5.307 12 C -0.025 4.025 13 C -0.036 4.036 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.052 4.052 17 Cl -0.039 7.039 18 C -0.101 4.101 19 C -0.090 4.090 20 C -0.188 4.188 21 C -0.042 4.042 22 N -0.145 5.145 23 C 0.031 3.969 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.578 -23.265 -2.580 23.414 hybrid contribution 0.027 -0.005 0.886 0.886 sum 0.605 -23.270 -1.694 23.339 Atomic orbital electron populations 1.69972 1.06036 1.26531 1.50741 1.25003 0.94829 0.99189 0.95365 0.86593 0.79786 0.83493 0.78107 1.20637 1.21264 1.19928 1.21183 0.92978 0.91012 1.50737 0.92754 1.19056 0.94022 0.90362 0.97682 1.22160 0.96949 0.88144 0.98656 1.60567 1.19311 1.01373 1.49494 1.20790 0.93491 0.87045 1.01221 1.19810 0.96505 0.96490 0.90840 1.20768 0.98854 0.94381 0.98221 1.20792 0.97124 0.96296 0.97321 1.20577 1.00019 0.90063 0.94531 1.98356 1.73709 1.33183 1.98607 1.18598 1.01431 0.96604 0.93502 1.21448 0.96637 0.99452 0.91433 1.21952 1.00659 0.96741 0.99453 1.23127 0.91792 0.92818 0.96490 1.68222 1.18885 1.29781 0.97629 1.18588 0.95327 0.89980 0.92993 0.93030 0.95625 0.96927 0.96748 0.92145 0.85000 0.89458 0.94931 0.84386 0.84519 0.84297 0.84386 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.70 5.23 -27.89 -0.15 0.55 16 10 C 0.07 1.48 5.62 -3.82 -0.02 1.46 16 11 N -0.68 -12.58 6.49 -115.05 -0.75 -13.33 16 12 C 0.10 1.58 5.48 -4.98 -0.03 1.55 16 13 C -0.04 -0.49 5.40 -104.51 -0.56 -1.05 16 14 C -0.10 -1.14 9.56 -39.96 -0.38 -1.52 16 15 C -0.10 -0.99 9.73 -39.90 -0.39 -1.38 16 16 C -0.02 -0.27 6.32 -39.42 -0.25 -0.52 16 17 Cl -0.07 -0.64 27.56 -51.86 -1.43 -2.07 16 18 C -0.10 -1.24 5.74 -106.78 -0.61 -1.86 16 19 C -0.06 -0.67 9.53 -39.23 -0.37 -1.04 16 20 C -0.17 -1.62 10.03 -39.77 -0.40 -2.01 16 21 C 0.13 1.53 11.15 -17.47 -0.19 1.34 16 22 N -0.44 -6.64 9.61 -10.98 -0.11 -6.75 16 23 C 0.15 2.23 6.58 -84.86 -0.56 1.68 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.33 6.01 8.72 -39.29 -0.34 5.66 16 30 H 0.09 1.41 7.88 -51.93 -0.41 1.00 16 31 H 0.03 0.45 7.97 -51.93 -0.41 0.03 16 32 H 0.14 1.25 8.00 -52.48 -0.42 0.83 16 33 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.14 1.18 7.06 -52.48 -0.37 0.81 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -32.43 325.18 -10.45 -42.88 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.46 Total: 0.62 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -4.33 Total: -16.55 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.12 Total: -46.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.43 Total: -2.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.43 -10.45 -42.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344332261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.107 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds