Wall clock time and date at job start Tue Mar 31 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1 5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1 6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47107 * 179.97438 * 12 11 10 14 14 C 1.36132 * 120.11126 * 259.99845 * 13 12 11 15 15 C 1.39264 * 121.07979 * 179.97438 * 14 13 12 16 16 C 1.36305 * 120.86149 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 120.20721 * 179.97438 * 16 15 14 18 18 C 1.40509 * 119.58406 * 359.97438 * 16 15 14 19 19 C 1.40723 * 121.39099 * 180.02562 * 18 16 15 20 20 C 1.36605 * 118.15158 * 179.13195 * 19 18 16 21 21 C 1.39316 * 119.93658 * 0.82347 * 20 19 18 22 22 N 1.31089 * 121.74610 * 359.43073 * 21 20 19 23 23 C 1.33691 * 121.32092 * 0.02562 * 22 21 20 24 24 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 26 26 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 27 27 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 28 28 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 29 29 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 30 30 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 31 31 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 32 32 H 1.08004 * 119.45661 * 0.02562 * 14 13 12 33 33 H 1.08010 * 119.56839 * 180.02562 * 15 14 13 34 34 H 1.08006 * 120.92373 * 359.95654 * 19 18 16 35 35 H 1.07995 * 120.03159 * 180.23076 * 20 19 18 36 36 H 1.07995 * 119.12826 * 179.45799 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6474 -7.3604 -0.0006 14 6 1.4642 -8.0493 1.1592 15 6 0.7391 -9.2380 1.1825 16 6 0.1922 -9.7458 0.0419 17 17 -0.7080 -11.2295 0.0903 18 6 0.3615 -9.0610 -1.1732 19 6 -0.1871 -9.5505 -2.3731 20 6 0.0029 -8.8220 -3.5130 21 6 0.7377 -7.6393 -3.4679 22 7 1.2520 -7.1890 -2.3493 23 6 1.0939 -7.8480 -1.1969 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.8742 -4.9845 0.7801 30 1 3.0640 -6.0348 -0.8901 31 1 3.0628 -6.0349 0.8899 32 1 1.8874 -7.6671 2.0765 33 1 0.6084 -9.7644 2.1165 34 1 -0.7540 -10.4696 -2.3899 35 1 -0.4081 -9.1675 -4.4501 36 1 0.8873 -7.0782 -4.3785 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344332261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:51 Heat of formation + Delta-G solvation = 19.027368 kcal Electronic energy + Delta-G solvation = -19474.655075 eV Core-core repulsion = 16369.085840 eV Total energy + Delta-G solvation = -3105.569234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.91163 -38.59449 -37.96254 -36.98689 -35.22835 -34.21317 -32.17707 -31.62859 -30.34667 -27.03801 -25.39743 -24.81025 -24.67428 -22.46780 -21.82397 -19.33312 -18.51006 -18.15575 -18.06125 -16.74046 -16.39552 -16.00216 -15.87377 -15.47649 -15.27155 -15.12876 -14.48950 -14.21451 -14.13739 -14.02639 -13.71518 -13.60731 -13.07945 -12.85522 -12.71123 -12.48657 -12.35421 -12.12857 -11.95381 -11.88203 -11.42778 -11.35045 -11.22422 -10.56168 -10.40935 -9.84001 -9.29091 -9.09799 -8.19555 -6.31345 -0.72202 -0.22941 0.86891 0.96797 1.40624 1.42759 1.53671 1.84924 2.41272 2.98789 3.13683 3.32880 3.49783 3.55651 3.73811 3.75710 3.98464 4.02613 4.31398 4.36024 4.40153 4.52538 4.62212 4.64728 4.78515 4.83122 4.97011 5.02077 5.07839 5.18373 5.34354 5.43625 5.46798 5.67765 5.76687 5.78895 6.14006 6.28397 6.55052 6.85987 7.00414 7.37886 8.92748 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026299 B = 0.003059 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.429698 B = 9151.908029 C = 9638.903179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.089 3.911 11 N -0.686 5.686 12 C 0.113 3.887 13 C -0.066 4.066 14 C -0.088 4.088 15 C -0.097 4.097 16 C -0.027 4.027 17 Cl -0.051 7.051 18 C -0.116 4.116 19 C -0.068 4.068 20 C -0.161 4.161 21 C 0.121 3.879 22 N -0.486 5.486 23 C 0.129 3.871 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.009 1.009 27 H 0.024 0.976 28 H 0.054 0.946 29 H 0.335 0.665 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.176 0.824 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -25.224 -1.694 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.003 4.003 10 C -0.040 4.040 11 N -0.317 5.317 12 C -0.016 4.016 13 C -0.067 4.067 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.054 4.054 17 Cl -0.022 7.022 18 C -0.118 4.118 19 C -0.093 4.093 20 C -0.180 4.180 21 C -0.051 4.051 22 N -0.194 5.194 23 C 0.007 3.993 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.009 0.991 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.178 0.822 35 H 0.193 0.807 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.039 -24.460 -2.260 24.586 hybrid contribution -0.193 0.228 0.744 0.802 sum 0.846 -24.232 -1.516 24.294 Atomic orbital electron populations 1.70114 1.07899 1.27795 1.51474 1.26003 0.95774 1.03458 0.94607 0.85399 0.78656 0.78176 0.78507 1.19810 1.20651 1.18551 1.21616 0.93565 0.92175 1.50862 0.92036 1.18890 0.94256 0.92363 0.94792 1.21746 0.95495 0.87998 0.98744 1.60422 1.20074 1.01262 1.49904 1.20670 0.93100 0.86559 1.01240 1.19754 0.98392 0.96570 0.91974 1.21039 0.97675 0.94102 0.98050 1.21100 0.96317 0.95947 0.98233 1.20739 0.99787 0.90494 0.94422 1.98360 1.73247 1.32028 1.98564 1.18806 1.01709 0.96391 0.94939 1.21769 0.96368 1.00154 0.91044 1.22288 0.99439 0.95493 1.00791 1.23613 0.91427 0.93762 0.96340 1.68178 1.20926 1.31465 0.98819 1.18816 0.96330 0.91020 0.93109 0.92757 0.99259 0.99078 0.95823 0.92706 0.84760 0.90971 0.93089 0.82161 0.81711 0.82247 0.80678 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 3 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -31.84 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.91 5.23 29.85 0.16 2.07 16 10 C 0.09 3.91 5.62 86.30 0.49 4.40 16 11 N -0.69 -26.17 6.49 -517.92 -3.36 -29.53 16 12 C 0.11 3.48 5.48 85.56 0.47 3.95 16 13 C -0.07 -1.82 5.40 -19.79 -0.11 -1.92 16 14 C -0.09 -1.85 9.56 22.03 0.21 -1.64 16 15 C -0.10 -1.81 9.73 22.07 0.21 -1.60 16 16 C -0.03 -0.56 6.32 22.37 0.14 -0.42 16 17 Cl -0.05 -0.86 27.56 -2.72 -0.07 -0.94 16 18 C -0.12 -2.83 5.74 -21.26 -0.12 -2.95 16 19 C -0.07 -1.32 9.53 22.50 0.21 -1.11 16 20 C -0.16 -2.83 10.03 22.15 0.22 -2.61 16 21 C 0.12 2.81 11.15 85.06 0.95 3.76 16 22 N -0.49 -15.14 9.61 -188.66 -1.81 -16.96 16 23 C 0.13 3.80 6.58 40.28 0.27 4.07 16 24 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 25 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.34 12.40 8.72 -89.69 -0.78 11.62 16 30 H 0.07 2.42 7.88 -2.39 -0.02 2.40 16 31 H 0.05 1.36 7.97 -2.39 -0.02 1.34 16 32 H 0.16 2.53 8.00 -2.91 -0.02 2.51 16 33 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.16 2.34 7.06 -2.91 -0.02 2.32 16 35 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -71.86 325.18 1.17 -70.69 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.32 Total: 12.85 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 3.79 Total: -25.19 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.89 Total: -104.40 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.07 Total: -0.94 kcal Total: -71.86 1.17 -70.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344332261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.714 kcal (2) G-P(sol) polarization free energy of solvation -71.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds