Wall clock time and date at job start Tue Mar 31 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48494 * 109.47596 * 270.00358 * 3 2 1 5 5 H 1.48500 * 109.47219 * 30.00999 * 3 2 1 6 6 H 1.48506 * 109.46876 * 150.00310 * 3 2 1 7 7 C 1.37883 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99656 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46669 * 180.02562 * 9 7 2 11 11 C 1.36389 * 125.85800 * 84.97294 * 10 9 7 12 12 C 1.35058 * 108.93397 * 180.02562 * 11 10 9 13 13 C 1.41100 * 108.23904 * 0.02562 * 12 11 10 14 14 N 1.33049 * 126.37294 * 179.97438 * 13 12 11 15 15 C 1.33705 * 120.00027 * 0.02999 * 14 13 12 16 16 O 1.21863 * 120.00050 * 359.97438 * 15 14 13 17 17 C 1.48123 * 120.00049 * 180.26991 * 15 14 13 18 18 C 1.39473 * 120.53818 * 359.45091 * 17 15 14 19 19 N 1.31678 * 120.63417 * 179.70190 * 18 17 15 20 20 C 1.31933 * 121.89502 * 0.58302 * 19 18 17 21 21 C 1.38528 * 121.02266 * 359.70508 * 20 19 18 22 22 F 1.35101 * 120.37837 * 179.97438 * 21 20 19 23 23 C 1.38631 * 119.24698 * 359.97438 * 21 20 19 24 24 N 1.37399 * 107.25552 * 0.24211 * 13 12 11 25 25 H 0.97001 * 126.35630 * 179.73478 * 24 13 12 26 26 H 0.97005 * 119.99969 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47487 * 59.99876 * 9 7 2 28 28 H 1.08998 * 109.46643 * 299.99541 * 9 7 2 29 29 H 1.08004 * 125.53283 * 0.05582 * 11 10 9 30 30 H 1.08004 * 125.88286 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.68199 * 359.97438 * 18 17 15 32 32 H 1.08000 * 119.48902 * 179.67855 * 20 19 18 33 33 H 1.07998 * 120.86453 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.7957 -4.1570 1.1006 12 6 3.6096 -5.1611 0.7089 13 6 3.5374 -5.2654 -0.6964 14 7 4.1952 -6.1359 -1.4578 15 6 5.0205 -7.0254 -0.8961 16 8 5.1705 -7.0385 0.3132 17 6 5.7574 -7.9906 -1.7443 18 6 5.5901 -7.9890 -3.1290 19 7 6.2487 -8.8424 -3.8853 20 6 7.0766 -9.7329 -3.3733 21 6 7.2935 -9.8034 -2.0069 22 9 8.1438 -10.7208 -1.4966 23 6 6.6282 -8.9217 -1.1692 24 7 2.6661 -4.2968 -1.1328 25 1 2.4162 -4.1206 -2.0533 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6247 -2.5570 0.8897 29 1 2.6392 -3.8373 2.1203 30 1 4.2120 -5.7780 1.3593 31 1 4.9173 -7.2782 -3.5856 32 1 7.5929 -10.4178 -4.0296 33 1 6.7781 -8.9533 -0.1001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345319005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:42 Heat of formation + Delta-G solvation = 58.127225 kcal Electronic energy + Delta-G solvation = -21108.554568 eV Core-core repulsion = 17472.804112 eV Total energy + Delta-G solvation = -3635.750456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -49.06211 -41.03900 -40.12675 -38.26315 -34.43145 -33.14418 -32.45811 -31.39327 -31.22094 -30.45257 -27.00779 -24.98509 -23.52923 -23.20980 -21.79977 -21.43794 -19.76613 -17.63702 -17.35924 -17.11330 -16.92748 -16.56417 -15.90707 -15.42969 -15.27931 -14.98510 -14.79898 -14.32155 -14.01721 -13.89945 -13.25551 -13.18458 -13.16714 -12.93553 -12.60619 -12.26438 -12.10236 -11.44822 -11.13228 -10.61264 -10.55402 -10.21940 -9.89339 -9.71224 -9.40950 -9.21924 -9.01560 -9.00003 -8.63241 -7.16056 -6.59473 -4.74819 0.54110 0.97456 1.59578 1.88910 2.83432 3.00750 3.09311 3.12748 3.51423 3.77171 3.98592 4.09763 4.34396 4.43037 4.51091 4.68742 4.73489 4.91552 5.09493 5.11644 5.46401 5.68166 5.69309 5.81356 6.01189 6.32960 6.37173 6.43661 6.53482 6.60353 7.25118 7.30706 7.40772 7.43684 7.70616 7.76359 8.04599 8.33594 8.96554 9.06676 10.44285 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.035646 B = 0.002767 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.319343 B =10116.852396 C =10302.291484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.252 3.748 10 N -0.335 5.335 11 C 0.166 3.834 12 C -0.331 4.331 13 C 0.470 3.530 14 N -0.692 5.692 15 C 0.535 3.465 16 O -0.576 6.576 17 C -0.115 4.115 18 C 0.142 3.858 19 N -0.470 5.470 20 C 0.082 3.918 21 C 0.032 3.968 22 F -0.133 7.133 23 C -0.067 4.067 24 N -0.461 5.461 25 H 0.447 0.553 26 H 0.273 0.727 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.191 0.809 30 H 0.185 0.815 31 H 0.181 0.819 32 H 0.166 0.834 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 -11.351 -2.139 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.599 4.599 8 H 0.089 0.911 9 C 0.136 3.864 10 N -0.119 5.119 11 C 0.019 3.981 12 C -0.363 4.363 13 C 0.221 3.779 14 N -0.457 5.457 15 C 0.320 3.680 16 O -0.458 6.458 17 C -0.120 4.120 18 C -0.016 4.016 19 N -0.178 5.178 20 C -0.076 4.076 21 C 0.010 3.990 22 F -0.111 7.111 23 C -0.095 4.095 24 N -0.183 5.183 25 H 0.295 0.705 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.208 0.792 30 H 0.202 0.798 31 H 0.198 0.802 32 H 0.183 0.817 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.784 -10.986 -3.363 12.863 hybrid contribution 0.636 0.879 1.195 1.614 sum 6.420 -10.107 -2.168 12.168 Atomic orbital electron populations 1.69890 1.06164 1.28456 1.47655 1.24955 0.95026 0.99796 0.93657 0.86273 0.79765 0.81604 0.78679 1.20133 1.20621 1.19389 1.21386 0.94084 0.89419 1.55060 0.91145 1.20152 0.85576 0.79717 1.00960 1.48186 1.38759 1.28606 0.96376 1.22925 0.90979 0.91882 0.92292 1.22468 1.11682 1.07078 0.95100 1.19055 0.84188 0.84770 0.89909 1.68662 1.24326 1.15756 1.36914 1.18502 0.81153 0.82726 0.85592 1.90628 1.65967 1.72582 1.16595 1.20829 0.98414 0.97373 0.95414 1.23359 0.94406 0.94205 0.89625 1.67836 1.06486 1.03957 1.39471 1.23020 0.96161 0.97218 0.91207 1.18661 0.94841 0.91957 0.93500 1.91514 1.68063 1.63973 1.87585 1.21803 0.93507 0.92307 1.01844 1.44623 1.41145 1.28795 1.03726 0.70508 0.91724 0.92847 0.91122 0.79222 0.79833 0.80242 0.81716 0.82744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.77 13.29 55.43 0.74 -21.03 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 18.67 29.54 -169.99 -5.02 13.65 16 4 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.56 -12.75 9.39 -34.44 -0.32 -13.07 16 8 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.25 4.93 6.19 -5.19 -0.03 4.90 16 10 N -0.33 -5.72 3.63 -62.24 -0.23 -5.95 16 11 C 0.17 2.56 11.45 -16.66 -0.19 2.37 16 12 C -0.33 -5.66 9.52 -39.63 -0.38 -6.03 16 13 C 0.47 8.33 8.07 -155.25 -1.25 7.08 16 14 N -0.69 -12.41 9.70 -12.18 -0.12 -12.53 16 15 C 0.54 9.73 7.70 -12.68 -0.10 9.63 16 16 O -0.58 -11.45 13.35 5.04 0.07 -11.38 16 17 C -0.12 -1.77 5.89 -104.77 -0.62 -2.38 16 18 C 0.14 1.98 10.75 -17.16 -0.18 1.80 16 19 N -0.47 -6.23 10.34 -12.88 -0.13 -6.36 16 20 C 0.08 0.94 11.16 -17.40 -0.19 0.75 16 21 C 0.03 0.39 7.33 -39.33 -0.29 0.10 16 22 F -0.13 -1.57 17.28 2.25 0.04 -1.54 16 23 C -0.07 -0.93 9.70 -38.83 -0.38 -1.31 16 24 N -0.46 -7.51 7.38 31.33 0.23 -7.28 16 25 H 0.45 6.30 8.96 -182.55 -1.64 4.67 16 26 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.19 2.25 8.06 -52.48 -0.42 1.83 16 30 H 0.18 3.28 5.77 -52.48 -0.30 2.98 16 31 H 0.18 2.38 7.56 -52.48 -0.40 1.99 16 32 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.15 2.07 7.74 -52.49 -0.41 1.67 16 LS Contribution 306.99 15.07 4.63 4.63 Total: -1.00 -27.31 306.99 -7.81 -35.12 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.98 Total: 7.26 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -4.03 Total: 5.40 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.49 Total: -53.15 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.31 -7.81 -35.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345319005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.248 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds