Wall clock time and date at job start Tue Mar 31 2020 06:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48494 * 109.47596 * 270.00358 * 3 2 1 5 5 H 1.48500 * 109.47219 * 30.00999 * 3 2 1 6 6 H 1.48506 * 109.46876 * 150.00310 * 3 2 1 7 7 C 1.37883 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99656 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46669 * 180.02562 * 9 7 2 11 11 C 1.36389 * 125.85800 * 84.97294 * 10 9 7 12 12 C 1.35058 * 108.93397 * 180.02562 * 11 10 9 13 13 C 1.41100 * 108.23904 * 0.02562 * 12 11 10 14 14 N 1.33049 * 126.37294 * 179.97438 * 13 12 11 15 15 C 1.33705 * 120.00027 * 0.02999 * 14 13 12 16 16 O 1.21863 * 120.00050 * 359.97438 * 15 14 13 17 17 C 1.48123 * 120.00049 * 180.26991 * 15 14 13 18 18 C 1.39473 * 120.53818 * 359.45091 * 17 15 14 19 19 N 1.31678 * 120.63417 * 179.70190 * 18 17 15 20 20 C 1.31933 * 121.89502 * 0.58302 * 19 18 17 21 21 C 1.38528 * 121.02266 * 359.70508 * 20 19 18 22 22 F 1.35101 * 120.37837 * 179.97438 * 21 20 19 23 23 C 1.38631 * 119.24698 * 359.97438 * 21 20 19 24 24 N 1.37399 * 107.25552 * 0.24211 * 13 12 11 25 25 H 0.97001 * 126.35630 * 179.73478 * 24 13 12 26 26 H 0.97005 * 119.99969 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47487 * 59.99876 * 9 7 2 28 28 H 1.08998 * 109.46643 * 299.99541 * 9 7 2 29 29 H 1.08004 * 125.53283 * 0.05582 * 11 10 9 30 30 H 1.08004 * 125.88286 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.68199 * 359.97438 * 18 17 15 32 32 H 1.08000 * 119.48902 * 179.67855 * 20 19 18 33 33 H 1.07998 * 120.86453 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.7957 -4.1570 1.1006 12 6 3.6096 -5.1611 0.7089 13 6 3.5374 -5.2654 -0.6964 14 7 4.1952 -6.1359 -1.4578 15 6 5.0205 -7.0254 -0.8961 16 8 5.1705 -7.0385 0.3132 17 6 5.7574 -7.9906 -1.7443 18 6 5.5901 -7.9890 -3.1290 19 7 6.2487 -8.8424 -3.8853 20 6 7.0766 -9.7329 -3.3733 21 6 7.2935 -9.8034 -2.0069 22 9 8.1438 -10.7208 -1.4966 23 6 6.6282 -8.9217 -1.1692 24 7 2.6661 -4.2968 -1.1328 25 1 2.4162 -4.1206 -2.0533 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6247 -2.5570 0.8897 29 1 2.6392 -3.8373 2.1203 30 1 4.2120 -5.7780 1.3593 31 1 4.9173 -7.2782 -3.5856 32 1 7.5929 -10.4178 -4.0296 33 1 6.7781 -8.9533 -0.1001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345319005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:37 Heat of formation + Delta-G solvation = 41.694673 kcal Electronic energy + Delta-G solvation = -21109.267137 eV Core-core repulsion = 17472.804112 eV Total energy + Delta-G solvation = -3636.463025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -50.02927 -42.38857 -41.23328 -39.58592 -35.99262 -34.70778 -33.57278 -32.68706 -32.54099 -31.73698 -28.56427 -26.23906 -24.73250 -24.58488 -23.09964 -22.74808 -21.05122 -19.01940 -18.68101 -18.43223 -18.07865 -17.75530 -16.89789 -16.77278 -16.72539 -16.40561 -16.13921 -15.71027 -15.37311 -14.88681 -14.54274 -14.44863 -14.37097 -14.20148 -14.10559 -13.69235 -13.28274 -13.08725 -12.75538 -12.32727 -12.10631 -11.46348 -11.25931 -10.99342 -10.78296 -10.59247 -10.56167 -10.04543 -10.03686 -8.64382 -8.30223 -6.56741 -0.57359 -0.07865 0.30528 0.53811 1.38442 1.43349 1.50653 1.54064 2.30159 2.40174 2.57927 2.90901 2.95919 3.10109 3.26639 3.42919 3.70962 3.83338 3.87129 4.04508 4.29669 4.38260 4.49473 4.71302 4.84637 4.88189 4.92885 5.13345 5.22685 5.50543 5.52261 5.69142 5.91221 6.05402 6.36629 6.56452 6.67790 6.72469 7.17304 7.68633 8.65527 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.035646 B = 0.002767 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.319343 B =10116.852396 C =10302.291484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.566 4.566 8 H 0.061 0.939 9 C 0.265 3.735 10 N -0.341 5.341 11 C 0.181 3.819 12 C -0.343 4.343 13 C 0.455 3.545 14 N -0.696 5.696 15 C 0.526 3.474 16 O -0.602 6.602 17 C -0.137 4.137 18 C 0.146 3.854 19 N -0.478 5.478 20 C 0.099 3.901 21 C 0.036 3.964 22 F -0.128 7.128 23 C -0.070 4.070 24 N -0.456 5.456 25 H 0.455 0.545 26 H 0.274 0.726 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.227 0.773 30 H 0.177 0.823 31 H 0.182 0.818 32 H 0.204 0.796 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 -11.846 -2.577 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.787 3.213 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.604 4.604 8 H 0.079 0.921 9 C 0.148 3.852 10 N -0.125 5.125 11 C 0.035 3.965 12 C -0.374 4.374 13 C 0.206 3.794 14 N -0.460 5.460 15 C 0.312 3.688 16 O -0.486 6.486 17 C -0.142 4.142 18 C -0.011 4.011 19 N -0.186 5.186 20 C -0.059 4.059 21 C 0.015 3.985 22 F -0.106 7.106 23 C -0.097 4.097 24 N -0.179 5.179 25 H 0.304 0.696 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.243 0.757 30 H 0.194 0.806 31 H 0.199 0.801 32 H 0.220 0.780 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.581 -11.484 -3.817 13.776 hybrid contribution 0.449 0.937 1.310 1.672 sum 7.030 -10.548 -2.507 12.921 Atomic orbital electron populations 1.69951 1.07111 1.29035 1.48904 1.25570 0.95595 1.02307 0.93643 0.85476 0.78659 0.78791 0.78353 1.20290 1.20397 1.19414 1.21601 0.93805 0.90836 1.54204 0.92096 1.19819 0.85414 0.79240 1.00702 1.48015 1.38918 1.28504 0.97068 1.23462 0.89272 0.90540 0.93232 1.22417 1.12366 1.07777 0.94866 1.19281 0.84499 0.85095 0.90536 1.68724 1.24437 1.15883 1.36994 1.18982 0.81095 0.83012 0.85696 1.90601 1.66943 1.73456 1.17647 1.20652 0.99773 0.98058 0.95707 1.23346 0.94359 0.94344 0.89055 1.67928 1.07036 1.04354 1.39276 1.23606 0.94646 0.96388 0.91305 1.18611 0.94625 0.91628 0.93652 1.91532 1.67819 1.63672 1.87605 1.21841 0.93391 0.92371 1.02086 1.44595 1.40848 1.28409 1.04002 0.69578 0.91682 0.93551 0.90758 0.75701 0.80624 0.80099 0.77957 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.36 13.29 21.45 0.28 -44.08 16 2 C 0.03 1.45 5.46 84.66 0.46 1.92 16 3 Si 0.96 37.65 29.54 68.60 2.03 39.67 16 4 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 7 C -0.57 -25.22 9.39 25.60 0.24 -24.98 16 8 H 0.06 2.80 7.81 -2.91 -0.02 2.77 16 9 C 0.27 10.14 6.19 85.64 0.53 10.67 16 10 N -0.34 -11.30 3.63 -350.82 -1.27 -12.58 16 11 C 0.18 5.33 11.45 83.25 0.95 6.28 16 12 C -0.34 -11.59 9.52 22.24 0.21 -11.38 16 13 C 0.45 16.11 8.07 133.89 1.08 17.19 16 14 N -0.70 -25.14 9.70 -311.19 -3.02 -28.15 16 15 C 0.53 19.38 7.70 87.04 0.67 20.05 16 16 O -0.60 -24.45 13.35 -4.87 -0.07 -24.52 16 17 C -0.14 -4.18 5.89 -19.96 -0.12 -4.30 16 18 C 0.15 3.98 10.75 85.01 0.91 4.89 16 19 N -0.48 -11.75 10.34 -194.66 -2.01 -13.76 16 20 C 0.10 1.99 11.16 84.75 0.95 2.94 16 21 C 0.04 0.82 7.33 22.43 0.16 0.98 16 22 F -0.13 -2.75 17.28 44.97 0.78 -1.97 16 23 C -0.07 -1.88 9.70 22.76 0.22 -1.66 16 24 N -0.46 -14.64 7.38 -54.81 -0.40 -15.04 16 25 H 0.45 12.68 8.96 -213.28 -1.91 10.77 16 26 H 0.27 12.73 8.31 -92.70 -0.77 11.96 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.23 4.79 8.06 -2.91 -0.02 4.76 16 30 H 0.18 6.34 5.77 -2.91 -0.02 6.32 16 31 H 0.18 4.75 7.56 -2.91 -0.02 4.73 16 32 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 33 H 0.15 4.10 7.74 -2.91 -0.02 4.08 16 Total: -1.00 -57.10 306.99 1.86 -55.24 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.73 Total: 22.58 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 6.28 Total: 22.60 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -6.42 Total: -113.61 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.07 Total: -24.52 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.67 kcal Total: -57.10 1.86 -55.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345319005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.938 kcal (2) G-P(sol) polarization free energy of solvation -57.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds