Wall clock time and date at job start Tue Mar 31 2020 05:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76192 * 102.99969 * 2 1 4 4 C 1.39002 * 120.08195 * 359.97438 * 3 2 1 5 5 C 1.38055 * 119.92100 * 179.97438 * 4 3 2 6 6 C 1.38325 * 120.07990 * 0.02652 * 5 4 3 7 7 C 1.38276 * 120.16201 * 359.97438 * 6 5 4 8 8 C 1.38104 * 120.08214 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.04205 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46664 * 264.99793 * 9 8 7 11 11 O 1.21287 * 120.00184 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99655 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00165 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99981 * 17.71894 * 13 12 10 15 15 C 1.38948 * 120.00190 * 197.72544 * 13 12 10 16 16 N 1.31411 * 119.99964 * 21.41382 * 15 13 12 17 17 Si 1.86804 * 119.99918 * 201.41794 * 15 13 12 18 18 H 1.48491 * 109.47233 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47030 * 120.00063 * 17 15 13 20 20 H 1.48503 * 109.46809 * 239.99664 * 17 15 13 21 21 C 1.46510 * 120.00074 * 359.97438 * 12 10 9 22 22 C 1.47193 * 109.46794 * 84.23115 * 21 12 10 23 23 N 4.51808 * 140.75976 * 170.27003 * 2 1 3 24 24 H 1.09000 * 109.47039 * 299.99785 * 1 2 3 25 25 H 1.08996 * 109.47695 * 59.99834 * 1 2 3 26 26 H 1.09005 * 109.46942 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.03663 * 0.04606 * 4 3 2 28 28 H 1.08001 * 119.95814 * 180.29465 * 5 4 3 29 29 H 1.08001 * 119.91825 * 179.97438 * 6 5 4 30 30 H 1.08004 * 119.96126 * 180.02562 * 7 6 5 31 31 H 1.08994 * 109.47147 * 24.99537 * 9 8 7 32 32 H 1.08998 * 109.47105 * 144.99851 * 9 8 7 33 33 H 0.97004 * 120.00001 * 180.02562 * 16 15 13 34 34 H 1.08995 * 109.47020 * 204.23143 * 21 12 10 35 35 H 1.09003 * 109.47086 * 324.23198 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 -0.0005 5 6 1.5094 4.0105 0.0000 6 6 2.8328 4.4131 0.0005 7 6 3.8454 3.4715 0.0010 8 6 3.5386 2.1249 0.0016 9 6 4.6429 1.0995 0.0027 10 6 4.9274 0.6662 -1.4124 11 8 4.2960 1.1435 -2.3314 12 7 5.8836 -0.2517 -1.6567 13 6 6.1429 -0.6455 -2.9440 14 1 5.8055 -0.0401 -3.7722 15 6 6.8396 -1.8237 -3.1832 16 7 6.8861 -2.7583 -2.2606 17 14 7.7102 -2.0789 -4.8161 18 1 7.5064 -0.8865 -5.6773 19 1 9.1626 -2.2753 -4.5773 20 1 7.1530 -3.2781 -5.4919 21 6 6.6468 -0.8278 -0.5467 22 6 5.8936 -1.9502 0.0360 23 7 5.3132 -2.8169 0.4830 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.1616 2.3526 -0.0002 28 1 0.7211 4.7487 0.0044 29 1 3.0757 5.4654 0.0005 30 1 4.8776 3.7894 0.0019 31 1 5.5426 1.5350 0.4372 32 1 4.3360 0.2357 0.5925 33 1 7.3728 -3.5807 -2.4274 34 1 7.6078 -1.1871 -0.9144 35 1 6.8110 -0.0659 0.2154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346781762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:34 Heat of formation + Delta-G solvation = 12.943940 kcal Electronic energy + Delta-G solvation = -20508.785575 eV Core-core repulsion = 17404.996250 eV Total energy + Delta-G solvation = -3103.789325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89700 -39.63254 -37.51441 -36.13279 -34.06070 -33.40434 -32.14824 -29.71534 -29.35118 -28.65965 -26.26208 -23.70769 -22.83009 -20.79359 -19.71088 -18.44787 -18.18847 -17.93412 -16.92916 -16.59548 -16.39612 -15.89974 -15.43558 -15.21028 -14.91185 -14.79121 -14.67383 -14.42868 -13.98667 -13.82374 -13.45599 -13.40406 -13.35535 -13.10957 -12.94432 -12.79975 -12.44268 -12.30310 -12.12681 -12.04747 -11.90330 -11.09774 -10.99898 -10.60333 -10.43059 -9.86929 -9.67474 -8.38675 -8.33471 -5.91439 0.34534 0.46430 0.64433 1.39589 1.48604 1.55765 1.61237 1.86664 2.12723 2.30499 2.39034 2.76941 3.03718 3.27838 3.63709 3.78354 3.92014 4.12265 4.18543 4.19550 4.22025 4.37686 4.47773 4.58191 4.63869 4.69017 4.76833 4.91612 4.92672 5.13632 5.37962 5.52191 5.56920 5.63371 6.04472 6.11410 6.45297 7.05450 7.17457 7.40401 7.99284 8.67901 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.005391 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.247891 B = 5192.240099 C = 5670.341066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.185 6.185 3 C -0.085 4.085 4 C -0.146 4.146 5 C -0.107 4.107 6 C -0.125 4.125 7 C -0.102 4.102 8 C -0.061 4.061 9 C -0.096 4.096 10 C 0.465 3.535 11 O -0.603 6.603 12 N -0.458 5.458 13 C -0.335 4.335 14 H 0.080 0.920 15 C 0.004 3.996 16 N -0.894 5.894 17 Si 0.985 3.015 18 H -0.272 1.272 19 H -0.262 1.262 20 H -0.291 1.291 21 C 0.220 3.780 22 C 0.255 3.745 23 N -0.504 5.504 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.138 0.862 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.273 0.727 34 H 0.125 0.875 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 12.179 7.925 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.058 5.942 3 C -0.197 4.197 4 C -0.170 4.170 5 C -0.126 4.126 6 C -0.145 4.145 7 C -0.121 4.121 8 C -0.067 4.067 9 C -0.137 4.137 10 C 0.255 3.745 11 O -0.487 6.487 12 N -0.179 5.179 13 C -0.462 4.462 14 H 0.098 0.902 15 C -0.198 4.198 16 N -0.533 5.533 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.186 1.186 20 H -0.217 1.217 21 C 0.093 3.907 22 C -0.063 4.063 23 N -0.185 5.185 24 H 0.121 0.879 25 H 0.107 0.893 26 H 0.134 0.866 27 H 0.156 0.844 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.161 0.839 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.594 9.859 8.136 13.953 hybrid contribution -0.252 0.364 -1.244 1.320 sum -5.846 10.222 6.892 13.644 Atomic orbital electron populations 1.23714 0.91777 1.07954 1.06472 1.86311 1.10069 1.05520 1.92307 1.21701 0.96907 0.95765 1.05359 1.21381 0.98196 0.93716 1.03659 1.21388 0.97654 0.94963 0.98603 1.21497 0.92414 1.00626 1.00002 1.21258 1.01155 0.91053 0.98676 1.19180 0.91640 0.94974 1.00926 1.20666 0.99667 0.98753 0.94565 1.20590 0.79987 0.82976 0.90921 1.90519 1.50899 1.59491 1.47767 1.43781 1.31926 1.36047 1.06113 1.19595 1.36042 1.06654 0.83949 0.90227 1.25860 0.98312 0.93392 1.02237 1.69964 1.40586 1.06133 1.36648 0.85008 0.78578 0.77477 0.78005 1.19642 1.18627 1.21740 1.19083 0.94274 0.88695 0.88612 1.29729 0.92639 0.93963 0.89961 1.80823 1.10888 1.12360 1.14435 0.87882 0.89317 0.86597 0.84440 0.82693 0.82676 0.83855 0.85072 0.89750 0.91712 0.85715 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.15 113.37 1.04 -2.09 16 2 S -0.18 -6.71 20.86 -56.49 -1.18 -7.88 16 3 C -0.08 -2.90 6.11 22.63 0.14 -2.76 16 4 C -0.15 -3.99 9.36 22.41 0.21 -3.78 16 5 C -0.11 -2.42 10.04 22.25 0.22 -2.19 16 6 C -0.13 -2.87 10.04 22.30 0.22 -2.64 16 7 C -0.10 -2.85 9.67 22.25 0.22 -2.63 16 8 C -0.06 -2.10 4.39 -19.72 -0.09 -2.19 16 9 C -0.10 -3.44 3.90 29.10 0.11 -3.33 16 10 C 0.47 21.55 7.54 87.66 0.66 22.21 16 11 O -0.60 -32.88 15.68 -3.05 -0.05 -32.93 16 12 N -0.46 -21.70 2.60 -645.41 -1.68 -23.38 16 13 C -0.34 -17.79 9.32 84.04 0.78 -17.01 16 14 H 0.08 4.59 7.39 -2.91 -0.02 4.57 16 15 C 0.00 0.18 4.86 84.93 0.41 0.59 16 16 N -0.89 -45.65 9.48 21.66 0.21 -45.44 16 17 Si 0.98 40.88 29.60 68.60 2.03 42.91 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.22 8.62 4.91 84.57 0.42 9.03 16 22 C 0.25 11.41 12.94 89.45 1.16 12.57 16 23 N -0.50 -24.57 18.53 19.99 0.37 -24.19 16 24 H 0.10 1.94 7.75 -2.39 -0.02 1.93 16 25 H 0.09 1.99 7.75 -2.39 -0.02 1.97 16 26 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.14 3.07 5.88 -2.91 -0.02 3.05 16 28 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 31 H 0.13 3.51 7.33 -2.39 -0.02 3.50 16 32 H 0.08 3.17 6.38 -2.39 -0.02 3.15 16 33 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 34 H 0.13 4.98 6.46 -2.39 -0.02 4.96 16 35 H 0.14 3.76 6.68 -2.39 -0.02 3.74 16 Total: -1.00 -73.22 316.59 6.33 -66.89 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.12 Total: 18.25 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 5.51 Total: 5.79 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -1.10 Total: -93.02 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.05 Total: -32.93 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -1.18 Total: -7.88 kcal Total: -73.22 6.33 -66.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346781762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.831 kcal (2) G-P(sol) polarization free energy of solvation -73.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds