Wall clock time and date at job start Tue Mar 31 2020 08:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00295 * 2 1 4 4 H 1.48496 * 109.46923 * 270.00171 * 3 2 1 5 5 H 1.48503 * 109.46755 * 29.99749 * 3 2 1 6 6 H 1.48491 * 109.46957 * 149.99929 * 3 2 1 7 7 C 1.37878 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99787 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99880 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46841 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46923 * 179.97438 * 10 9 7 12 12 C 1.33789 * 124.17743 * 90.03034 * 11 10 9 13 13 O 1.21543 * 123.77488 * 359.95705 * 12 11 10 14 14 N 1.34527 * 112.46026 * 179.97438 * 12 11 10 15 15 C 1.47311 * 106.61751 * 359.97438 * 14 12 11 16 16 H 1.09009 * 110.59989 * 241.31926 * 15 14 12 17 17 C 1.50696 * 110.60275 * 118.52649 * 15 14 12 18 18 C 1.38266 * 119.94508 * 141.44838 * 17 15 14 19 19 C 1.38149 * 120.05411 * 179.70262 * 18 17 15 20 20 C 1.38726 * 119.94477 * 0.28574 * 19 18 17 21 21 O 1.35900 * 120.05752 * 180.02562 * 20 19 18 22 22 C 1.38729 * 119.89044 * 359.97438 * 20 19 18 23 23 C 1.38144 * 119.94142 * 0.02562 * 22 20 19 24 24 C 1.34768 * 124.17923 * 269.98293 * 11 10 9 25 25 O 1.21233 * 127.15624 * 0.08281 * 24 11 10 26 26 H 0.97008 * 119.99844 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47257 * 59.99779 * 9 7 2 28 28 H 1.08993 * 109.47252 * 299.99519 * 9 7 2 29 29 H 1.09000 * 109.47203 * 59.99957 * 10 9 7 30 30 H 1.09002 * 109.47404 * 300.00280 * 10 9 7 31 31 H 0.96996 * 126.69655 * 180.02562 * 14 12 11 32 32 H 1.08002 * 119.97497 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.02723 * 180.25964 * 19 18 17 34 34 H 0.96701 * 114.00536 * 89.99217 * 21 20 19 35 35 H 1.08007 * 120.02953 * 179.97438 * 22 20 19 36 36 H 1.08007 * 119.97030 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0001 11 7 5.4864 -2.6366 -0.0001 12 6 6.2380 -2.6373 1.1067 13 8 5.7818 -2.6372 2.2333 14 7 7.5552 -2.6377 0.8334 15 6 7.6810 -2.6378 -0.6343 16 1 8.2015 -3.5332 -0.9745 17 6 8.3978 -1.3987 -1.1052 18 6 9.2976 -1.4777 -2.1521 19 6 9.9514 -0.3421 -2.5897 20 6 9.7090 0.8771 -1.9739 21 8 10.3505 1.9958 -2.4028 22 6 8.8098 0.9528 -0.9202 23 6 8.1586 -0.1857 -0.4864 24 6 6.2435 -2.6368 -1.1151 25 8 5.8555 -2.6357 -2.2636 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6797 -0.8894 29 1 3.6584 -3.1502 -0.8903 30 1 3.6577 -3.1507 0.8896 31 1 8.2808 -2.6385 1.4772 32 1 9.4862 -2.4272 -2.6310 33 1 10.6510 -0.4036 -3.4102 34 1 9.8802 2.4771 -3.0973 35 1 8.6197 1.9008 -0.4389 36 1 7.4581 -0.1272 0.3337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349129986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:54 Heat of formation + Delta-G solvation = -57.141195 kcal Electronic energy + Delta-G solvation = -22825.120662 eV Core-core repulsion = 19275.539346 eV Total energy + Delta-G solvation = -3549.581316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.37628 -39.91170 -38.38860 -37.30686 -35.82965 -35.15113 -32.91621 -31.34925 -30.81019 -30.30887 -26.85333 -25.45605 -23.23348 -22.94401 -21.97034 -21.33853 -19.90647 -18.72287 -17.95860 -17.29994 -16.87331 -16.73357 -15.77982 -15.74528 -15.32952 -15.21278 -14.91266 -14.30500 -14.09835 -13.99849 -13.79918 -13.56166 -13.25926 -12.77035 -12.64559 -12.27450 -12.19568 -11.80715 -11.10986 -11.02470 -10.77049 -10.63820 -10.29560 -10.01438 -9.89083 -9.65213 -9.35699 -9.29072 -9.15483 -8.82080 -8.59447 -6.10114 -4.09757 0.76733 1.05577 1.73449 2.44769 3.10122 3.21924 3.27973 3.28677 3.34987 3.38597 3.88192 4.13766 4.27516 4.40742 4.46692 4.67267 4.83084 5.05419 5.23387 5.27352 5.30129 5.48851 5.69515 5.84118 5.91277 5.97342 6.09122 6.11348 6.17359 6.41805 6.45041 6.76749 7.07569 7.10364 7.32689 7.37815 7.51872 7.67648 8.27089 8.42400 8.91843 9.50913 11.02756 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.005373 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.262536 B = 5209.917202 C = 6281.898454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.128 3.872 11 N -0.570 5.570 12 C 0.699 3.301 13 O -0.534 6.534 14 N -0.728 5.728 15 C 0.137 3.863 16 H 0.133 0.867 17 C -0.108 4.108 18 C -0.076 4.076 19 C -0.146 4.146 20 C 0.114 3.886 21 O -0.501 6.501 22 C -0.142 4.142 23 C -0.077 4.077 24 C 0.526 3.474 25 O -0.459 6.459 26 H 0.265 0.735 27 H 0.023 0.977 28 H 0.016 0.984 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.438 0.562 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.393 0.607 35 H 0.132 0.868 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.908 -2.284 -4.318 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.009 3.991 11 N -0.316 5.316 12 C 0.400 3.600 13 O -0.406 6.406 14 N -0.393 5.393 15 C 0.028 3.972 16 H 0.150 0.850 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.164 4.164 20 C 0.070 3.930 21 O -0.312 6.312 22 C -0.161 4.161 23 C -0.095 4.095 24 C 0.311 3.689 25 O -0.328 6.328 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.282 0.718 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.250 0.750 35 H 0.150 0.850 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.533 -2.347 -3.929 22.993 hybrid contribution 0.342 1.190 -0.102 1.242 sum 22.875 -1.157 -4.031 23.256 Atomic orbital electron populations 1.69891 1.06199 1.27051 1.50445 1.24929 0.94709 0.99026 0.94242 0.86808 0.80434 0.83755 0.78540 1.20172 1.21112 1.19144 1.20849 0.88334 0.94939 1.51814 0.90491 1.19888 0.97985 0.91232 0.97040 1.22017 0.71215 1.01871 1.03984 1.46759 1.10864 1.66919 1.07038 1.15967 0.81782 0.77487 0.84736 1.91027 1.74997 1.54122 1.20476 1.45577 1.06987 1.80151 1.06620 1.20829 0.95502 0.98857 0.82042 0.84973 1.19492 0.99219 0.93598 0.98629 1.20849 0.94598 0.98840 0.95129 1.21375 1.01596 0.92268 1.01196 1.18546 0.92966 0.86688 0.94810 1.84792 1.48933 1.37924 1.59508 1.21439 0.96700 0.99494 0.98445 1.20936 0.98095 0.91338 0.99128 1.20584 0.87705 0.75219 0.85386 1.90802 1.78690 1.45339 1.17928 0.92537 0.95841 0.96571 0.89173 0.88919 0.71798 0.84822 0.84936 0.75011 0.84966 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.02 -0.57 4.36 -27.88 -0.12 -0.69 16 10 C 0.13 2.60 5.64 -4.04 -0.02 2.57 16 11 N -0.57 -9.84 2.60 -120.73 -0.31 -10.16 16 12 C 0.70 11.29 8.61 -88.02 -0.76 10.53 16 13 O -0.53 -10.56 17.48 5.33 0.09 -10.47 16 14 N -0.73 -8.02 5.49 -60.33 -0.33 -8.35 16 15 C 0.14 1.46 3.90 -69.36 -0.27 1.19 16 16 H 0.13 0.94 8.04 -51.92 -0.42 0.53 16 17 C -0.11 -1.15 5.07 -104.60 -0.53 -1.68 16 18 C -0.08 -0.68 9.68 -39.60 -0.38 -1.06 16 19 C -0.15 -1.32 9.99 -39.43 -0.39 -1.71 16 20 C 0.11 1.16 6.70 -39.22 -0.26 0.90 16 21 O -0.50 -4.48 13.50 -19.42 -0.26 -4.75 16 22 C -0.14 -1.58 9.99 -39.43 -0.39 -1.97 16 23 C -0.08 -0.91 9.31 -39.61 -0.37 -1.28 16 24 C 0.53 8.12 7.60 -10.55 -0.08 8.04 16 25 O -0.46 -8.31 17.76 5.60 0.10 -8.21 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 28 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 29 H 0.09 1.78 8.00 -51.93 -0.42 1.37 16 30 H 0.09 1.88 7.86 -51.93 -0.41 1.47 16 31 H 0.44 3.57 8.96 -40.82 -0.37 3.21 16 32 H 0.13 0.85 8.05 -52.49 -0.42 0.43 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.39 1.78 9.06 45.56 0.41 2.20 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.13 1.67 7.69 -52.48 -0.40 1.26 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -35.81 319.83 -7.02 -42.84 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.22 Total: 2.08 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -4.02 Total: 1.70 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.13 Total: -45.37 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.07 Total: -23.43 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.81 -7.02 -42.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.302 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds