Wall clock time and date at job start Tue Mar 31 2020 08:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00295 * 2 1 4 4 H 1.48496 * 109.46923 * 270.00171 * 3 2 1 5 5 H 1.48503 * 109.46755 * 29.99749 * 3 2 1 6 6 H 1.48491 * 109.46957 * 149.99929 * 3 2 1 7 7 C 1.37878 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99787 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99880 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46841 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46923 * 179.97438 * 10 9 7 12 12 C 1.33789 * 124.17743 * 90.03034 * 11 10 9 13 13 O 1.21543 * 123.77488 * 359.95705 * 12 11 10 14 14 N 1.34527 * 112.46026 * 179.97438 * 12 11 10 15 15 C 1.47311 * 106.61751 * 359.97438 * 14 12 11 16 16 H 1.09009 * 110.59989 * 241.31926 * 15 14 12 17 17 C 1.50696 * 110.60275 * 118.52649 * 15 14 12 18 18 C 1.38266 * 119.94508 * 141.44838 * 17 15 14 19 19 C 1.38149 * 120.05411 * 179.70262 * 18 17 15 20 20 C 1.38726 * 119.94477 * 0.28574 * 19 18 17 21 21 O 1.35900 * 120.05752 * 180.02562 * 20 19 18 22 22 C 1.38729 * 119.89044 * 359.97438 * 20 19 18 23 23 C 1.38144 * 119.94142 * 0.02562 * 22 20 19 24 24 C 1.34768 * 124.17923 * 269.98293 * 11 10 9 25 25 O 1.21233 * 127.15624 * 0.08281 * 24 11 10 26 26 H 0.97008 * 119.99844 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47257 * 59.99779 * 9 7 2 28 28 H 1.08993 * 109.47252 * 299.99519 * 9 7 2 29 29 H 1.09000 * 109.47203 * 59.99957 * 10 9 7 30 30 H 1.09002 * 109.47404 * 300.00280 * 10 9 7 31 31 H 0.96996 * 126.69655 * 180.02562 * 14 12 11 32 32 H 1.08002 * 119.97497 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.02723 * 180.25964 * 19 18 17 34 34 H 0.96701 * 114.00536 * 89.99217 * 21 20 19 35 35 H 1.08007 * 120.02953 * 179.97438 * 22 20 19 36 36 H 1.08007 * 119.97030 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0001 11 7 5.4864 -2.6366 -0.0001 12 6 6.2380 -2.6373 1.1067 13 8 5.7818 -2.6372 2.2333 14 7 7.5552 -2.6377 0.8334 15 6 7.6810 -2.6378 -0.6343 16 1 8.2015 -3.5332 -0.9745 17 6 8.3978 -1.3987 -1.1052 18 6 9.2976 -1.4777 -2.1521 19 6 9.9514 -0.3421 -2.5897 20 6 9.7090 0.8771 -1.9739 21 8 10.3505 1.9958 -2.4028 22 6 8.8098 0.9528 -0.9202 23 6 8.1586 -0.1857 -0.4864 24 6 6.2435 -2.6368 -1.1151 25 8 5.8555 -2.6357 -2.2636 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6797 -0.8894 29 1 3.6584 -3.1502 -0.8903 30 1 3.6577 -3.1507 0.8896 31 1 8.2808 -2.6385 1.4772 32 1 9.4862 -2.4272 -2.6310 33 1 10.6510 -0.4036 -3.4102 34 1 9.8802 2.4771 -3.0973 35 1 8.6197 1.9008 -0.4389 36 1 7.4581 -0.1272 0.3337 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349129986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:54 Heat of formation + Delta-G solvation = -84.935890 kcal Electronic energy + Delta-G solvation = -22826.325930 eV Core-core repulsion = 19275.539346 eV Total energy + Delta-G solvation = -3550.786584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.57733 -40.68108 -39.68515 -38.14806 -37.09880 -36.55868 -34.90104 -32.39769 -32.09248 -31.45736 -28.06218 -27.07017 -24.23641 -23.82908 -23.58281 -22.46368 -21.32917 -19.42678 -19.34149 -18.83676 -18.28165 -17.89976 -16.75197 -16.72932 -16.43831 -16.33807 -16.25604 -16.09676 -15.30896 -15.08694 -15.01975 -14.91884 -14.60771 -14.35786 -13.76722 -13.47035 -13.07429 -13.03599 -12.94777 -12.74139 -12.22708 -12.04984 -11.87002 -11.56694 -11.47108 -11.35039 -10.85490 -10.84429 -10.55893 -10.03020 -9.61681 -8.36901 -6.42083 -0.01370 0.31327 0.53715 1.22991 1.27488 1.29575 1.40515 1.92668 2.10969 2.28157 2.48191 2.97636 3.05449 3.27698 3.39778 3.72621 3.93651 3.96128 4.14467 4.29031 4.35560 4.37207 4.50480 4.54693 4.61144 4.78974 4.97824 5.14321 5.18527 5.21117 5.37035 5.40930 5.50056 5.76243 5.78353 6.06204 6.14561 6.33190 6.63484 6.79329 7.06794 7.22472 8.79166 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.005373 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.262536 B = 5209.917202 C = 6281.898454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.016 3.984 3 Si 0.941 3.059 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.532 4.532 8 H 0.047 0.953 9 C -0.013 4.013 10 C 0.139 3.861 11 N -0.580 5.580 12 C 0.698 3.302 13 O -0.577 6.577 14 N -0.699 5.699 15 C 0.155 3.845 16 H 0.185 0.815 17 C -0.119 4.119 18 C -0.065 4.065 19 C -0.146 4.146 20 C 0.113 3.887 21 O -0.510 6.510 22 C -0.160 4.160 23 C -0.094 4.094 24 C 0.520 3.480 25 O -0.488 6.488 26 H 0.269 0.731 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.454 0.546 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.412 0.588 35 H 0.131 0.869 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.340 -2.147 -5.555 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.182 4.182 3 Si 0.765 3.235 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.571 4.571 8 H 0.065 0.935 9 C -0.051 4.051 10 C 0.018 3.982 11 N -0.325 5.325 12 C 0.399 3.601 13 O -0.453 6.453 14 N -0.364 5.364 15 C 0.047 3.953 16 H 0.201 0.799 17 C -0.121 4.121 18 C -0.083 4.083 19 C -0.164 4.164 20 C 0.069 3.931 21 O -0.323 6.323 22 C -0.179 4.179 23 C -0.113 4.113 24 C 0.308 3.692 25 O -0.359 6.359 26 H 0.078 0.922 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.302 0.698 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.272 0.728 35 H 0.149 0.851 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 26.037 -2.210 -5.184 26.639 hybrid contribution -0.710 1.144 0.217 1.364 sum 25.326 -1.066 -4.967 25.831 Atomic orbital electron populations 1.70020 1.07910 1.28328 1.51745 1.25829 0.95574 1.02979 0.93865 0.85792 0.79337 0.79130 0.79253 1.18911 1.20132 1.18264 1.21157 0.90606 0.93978 1.51338 0.93488 1.19694 0.95305 0.93861 0.96222 1.21549 0.73736 0.99062 1.03851 1.46686 1.09782 1.67523 1.08527 1.16046 0.83093 0.77266 0.83691 1.91000 1.76075 1.56306 1.21931 1.45408 1.05297 1.78152 1.07573 1.20973 0.92185 1.01228 0.80891 0.79857 1.19492 1.00198 0.92709 0.99686 1.21213 0.93011 1.00300 0.93777 1.21690 1.01627 0.91634 1.01463 1.18690 0.92342 0.87636 0.94451 1.84742 1.49277 1.37920 1.60399 1.21523 0.97637 0.99368 0.99364 1.20894 0.98482 0.92497 0.99393 1.21379 0.89488 0.73859 0.84463 1.90785 1.79693 1.46508 1.18877 0.92154 0.96751 0.96740 0.88979 0.89505 0.69772 0.81422 0.82506 0.72815 0.85085 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 2 C 0.02 0.95 5.47 84.66 0.46 1.41 16 3 Si 0.94 45.68 27.47 68.60 1.88 47.57 16 4 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 7 C -0.53 -31.30 9.66 25.60 0.25 -31.06 16 8 H 0.05 2.96 7.99 -2.91 -0.02 2.93 16 9 C -0.01 -0.62 4.36 29.85 0.13 -0.49 16 10 C 0.14 5.74 5.64 86.38 0.49 6.23 16 11 N -0.58 -19.72 2.60 -773.12 -2.01 -21.73 16 12 C 0.70 21.97 8.61 179.44 1.54 23.52 16 13 O -0.58 -22.98 17.48 -3.85 -0.07 -23.04 16 14 N -0.70 -13.71 5.49 -463.20 -2.54 -16.25 16 15 C 0.16 2.77 3.90 43.62 0.17 2.94 16 16 H 0.18 1.55 8.04 -2.38 -0.02 1.54 16 17 C -0.12 -2.18 5.07 -19.85 -0.10 -2.28 16 18 C -0.06 -0.87 9.68 22.26 0.22 -0.65 16 19 C -0.15 -2.06 9.99 22.37 0.22 -1.83 16 20 C 0.11 2.01 6.70 22.50 0.15 2.16 16 21 O -0.51 -7.85 13.50 -92.42 -1.25 -9.10 16 22 C -0.16 -3.34 9.99 22.36 0.22 -3.12 16 23 C -0.09 -2.10 9.31 22.25 0.21 -1.90 16 24 C 0.52 15.17 7.60 87.94 0.67 15.83 16 25 O -0.49 -16.99 17.76 -2.88 -0.05 -17.04 16 26 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 27 H 0.01 0.73 7.20 -2.39 -0.02 0.71 16 28 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 29 H 0.09 3.73 8.00 -2.39 -0.02 3.71 16 30 H 0.09 3.66 7.86 -2.39 -0.02 3.64 16 31 H 0.45 6.13 8.96 -92.71 -0.83 5.30 16 32 H 0.17 1.10 8.05 -2.91 -0.02 1.08 16 33 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.41 2.71 9.06 -74.06 -0.67 2.04 16 35 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.11 2.78 7.69 -2.91 -0.02 2.76 16 Total: -1.00 -80.07 319.83 0.48 -79.60 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -0.42 Total: 8.20 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 4.63 Total: 10.76 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -4.26 Total: -96.94 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -1.37 Total: -49.18 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.57 kcal Total: -80.07 0.48 -79.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.340 kcal (2) G-P(sol) polarization free energy of solvation -80.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds