Wall clock time and date at job start Tue Mar 31 2020 08:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47232 * 179.97438 * 10 9 7 12 12 C 1.33794 * 124.17491 * 90.02322 * 11 10 9 13 13 O 1.21540 * 123.77412 * 359.96173 * 12 11 10 14 14 N 1.34530 * 112.45875 * 179.97438 * 12 11 10 15 15 C 1.47311 * 106.61587 * 0.02562 * 14 12 11 16 16 H 1.08996 * 110.59878 * 118.53002 * 15 14 12 17 17 C 1.50707 * 110.59573 * 241.32191 * 15 14 12 18 18 C 1.38260 * 119.94816 * 38.27087 * 17 15 14 19 19 C 1.38148 * 120.05563 * 179.72793 * 18 17 15 20 20 C 1.38728 * 119.94121 * 0.54862 * 19 18 17 21 21 O 1.35902 * 120.05456 * 179.74864 * 20 19 18 22 22 C 1.38727 * 119.88990 * 359.72519 * 20 19 18 23 23 C 1.38141 * 119.94700 * 359.97438 * 22 20 19 24 24 C 1.34761 * 124.18016 * 269.72444 * 11 10 9 25 25 O 1.21234 * 127.15939 * 0.02562 * 24 11 10 26 26 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 28 28 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 29 29 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 30 30 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 31 31 H 0.96997 * 126.69082 * 180.02562 * 14 12 11 32 32 H 1.08000 * 119.97251 * 0.02562 * 18 17 15 33 33 H 1.07999 * 120.02814 * 180.27017 * 19 18 17 34 34 H 0.96703 * 114.00021 * 269.97766 * 21 20 19 35 35 H 1.08009 * 120.02523 * 179.97438 * 22 20 19 36 36 H 1.08005 * 119.97255 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 1.1380 -5.5827 -1.1041 13 8 1.3664 -5.1882 -2.2308 14 7 0.4796 -6.7235 -0.8304 15 6 0.4153 -6.8310 0.6374 16 1 -0.6204 -6.8317 0.9768 17 6 1.1274 -8.0724 1.1097 18 6 2.2969 -8.4747 0.4915 19 6 2.9545 -9.6092 0.9263 20 6 2.4344 -10.3512 1.9768 21 8 3.0767 -11.4704 2.4031 22 6 1.2578 -9.9485 2.5917 23 6 0.6073 -8.8099 2.1573 24 6 1.1385 -5.5883 1.1176 25 8 1.3363 -5.2540 2.2660 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 2.8727 -3.6047 -0.8877 30 1 2.8713 -3.6038 0.8923 31 1 0.1178 -7.3526 -1.4740 32 1 2.6992 -7.8990 -0.3289 33 1 3.8702 -9.9206 0.4459 34 1 2.7971 -12.2797 1.9535 35 1 0.8508 -10.5248 3.4095 36 1 -0.3084 -8.4958 2.6360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349129987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:59 Heat of formation + Delta-G solvation = -64.503743 kcal Electronic energy + Delta-G solvation = -22479.139127 eV Core-core repulsion = 18929.238547 eV Total energy + Delta-G solvation = -3549.900580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.35344 -39.98134 -38.36058 -37.36738 -35.81852 -35.17919 -33.21156 -31.42259 -30.75411 -29.74940 -26.76275 -24.83291 -23.28023 -22.96330 -22.31492 -21.50804 -20.01545 -18.80921 -17.90457 -17.35955 -16.91931 -16.64455 -15.80605 -15.79575 -15.31510 -15.22987 -15.05863 -14.17176 -14.01089 -13.88194 -13.71227 -13.60394 -13.14646 -12.78412 -12.55873 -12.32386 -12.25088 -11.89034 -10.87333 -10.84974 -10.76565 -10.63816 -10.31281 -10.08666 -10.00965 -9.64971 -9.36555 -9.18314 -8.88649 -8.63188 -8.35821 -6.40410 -4.10433 0.70535 0.97883 1.77025 2.46473 3.11777 3.18784 3.29270 3.45130 3.47392 3.65695 3.80105 4.10657 4.26696 4.44315 4.54393 4.60846 4.82276 4.99229 5.20955 5.29495 5.38603 5.43511 5.62235 5.83973 5.89137 5.98417 6.03272 6.11649 6.15019 6.37848 6.47803 6.78291 7.17462 7.24788 7.26217 7.46272 7.56900 8.07331 8.30410 8.40056 8.81452 9.62271 11.00629 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.031061 B = 0.003438 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.247586 B = 8142.445760 C = 8354.355097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.018 3.982 3 Si 1.072 2.928 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.603 4.603 8 H 0.053 0.947 9 C 0.000 4.000 10 C 0.127 3.873 11 N -0.569 5.569 12 C 0.700 3.300 13 O -0.535 6.535 14 N -0.728 5.728 15 C 0.136 3.864 16 H 0.133 0.867 17 C -0.104 4.104 18 C -0.079 4.079 19 C -0.143 4.143 20 C 0.113 3.887 21 O -0.499 6.499 22 C -0.144 4.144 23 C -0.075 4.075 24 C 0.526 3.474 25 O -0.459 6.459 26 H 0.268 0.732 27 H 0.012 0.988 28 H 0.015 0.985 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.437 0.563 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.391 0.609 35 H 0.133 0.867 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 -24.350 2.216 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.186 4.186 3 Si 0.900 3.100 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.642 4.642 8 H 0.072 0.928 9 C -0.038 4.038 10 C 0.008 3.992 11 N -0.314 5.314 12 C 0.401 3.599 13 O -0.408 6.408 14 N -0.393 5.393 15 C 0.026 3.974 16 H 0.151 0.849 17 C -0.106 4.106 18 C -0.098 4.098 19 C -0.162 4.162 20 C 0.068 3.932 21 O -0.309 6.309 22 C -0.163 4.163 23 C -0.094 4.094 24 C 0.312 3.688 25 O -0.328 6.328 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.281 0.719 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.247 0.753 35 H 0.151 0.849 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.133 -21.767 2.619 21.954 hybrid contribution -0.235 -2.373 -0.553 2.448 sum 0.898 -24.140 2.066 24.245 Atomic orbital electron populations 1.70780 1.06923 1.30598 1.46068 1.25894 0.96499 1.02806 0.93451 0.83500 0.74864 0.75031 0.76612 1.21291 1.21294 1.20710 1.21828 0.94387 0.91276 1.56663 0.92830 1.19535 0.94930 0.92560 0.96800 1.22071 0.95284 0.78519 1.03318 1.46746 1.53218 1.24443 1.07006 1.15960 0.78572 0.80641 0.84729 1.91019 1.59307 1.69939 1.20502 1.45549 1.61947 1.25232 1.06558 1.20844 1.01709 0.92748 0.82058 0.84941 1.19526 0.96807 0.95819 0.98417 1.20886 0.93798 0.95896 0.99194 1.21401 1.01022 0.96699 0.97061 1.18550 0.91453 0.89412 0.93757 1.84839 1.64657 1.16434 1.64999 1.21401 0.94995 0.98534 1.01359 1.20902 0.99918 0.93545 0.95029 1.20547 0.78558 0.84341 0.85384 1.90803 1.53445 1.70542 1.17983 0.92151 0.96950 0.96635 0.89432 0.89652 0.71852 0.85521 0.85026 0.75278 0.84877 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.35 13.65 55.43 0.76 -27.59 16 2 C 0.02 0.52 5.46 -17.82 -0.10 0.43 16 3 Si 1.07 25.59 29.90 -169.99 -5.08 20.51 16 4 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.60 -17.42 9.11 -34.44 -0.31 -17.74 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.00 -0.01 4.61 -27.88 -0.13 -0.14 16 10 C 0.13 2.75 5.64 -4.04 -0.02 2.72 16 11 N -0.57 -10.48 2.60 -120.72 -0.31 -10.79 16 12 C 0.70 11.94 8.62 -88.01 -0.76 11.18 16 13 O -0.53 -11.07 17.48 5.33 0.09 -10.98 16 14 N -0.73 -8.47 5.49 -60.32 -0.33 -8.80 16 15 C 0.14 1.55 3.90 -69.35 -0.27 1.28 16 16 H 0.13 1.16 8.04 -51.93 -0.42 0.74 16 17 C -0.10 -1.07 5.06 -104.60 -0.53 -1.60 16 18 C -0.08 -0.82 9.31 -39.61 -0.37 -1.19 16 19 C -0.14 -1.34 9.99 -39.43 -0.39 -1.74 16 20 C 0.11 1.01 6.70 -39.22 -0.26 0.75 16 21 O -0.50 -3.88 13.50 -19.43 -0.26 -4.15 16 22 C -0.14 -1.21 9.99 -39.44 -0.39 -1.61 16 23 C -0.08 -0.66 9.68 -39.61 -0.38 -1.04 16 24 C 0.53 8.75 7.59 -10.56 -0.08 8.67 16 25 O -0.46 -8.95 17.75 5.60 0.10 -8.85 16 26 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 27 H 0.01 0.34 8.01 -51.93 -0.42 -0.07 16 28 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 29 H 0.09 1.88 7.86 -51.93 -0.41 1.47 16 30 H 0.09 1.81 8.00 -51.93 -0.42 1.39 16 31 H 0.44 3.74 8.96 -40.82 -0.37 3.37 16 32 H 0.13 1.36 7.70 -52.49 -0.40 0.96 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.39 1.02 9.06 45.56 0.41 1.43 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.91 8.05 -52.48 -0.42 0.48 16 LS Contribution 322.13 15.07 4.85 4.85 Total: -1.00 -36.89 322.13 -7.39 -44.27 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.19 Total: 1.54 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -4.00 Total: -0.02 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.11 Total: -47.18 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.07 Total: -23.98 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.89 -7.39 -44.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.229 kcal (2) G-P(sol) polarization free energy of solvation -36.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds