Wall clock time and date at job start Tue Mar 31 2020 08:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47232 * 179.97438 * 10 9 7 12 12 C 1.33794 * 124.17491 * 90.02322 * 11 10 9 13 13 O 1.21540 * 123.77412 * 359.96173 * 12 11 10 14 14 N 1.34530 * 112.45875 * 179.97438 * 12 11 10 15 15 C 1.47311 * 106.61587 * 0.02562 * 14 12 11 16 16 H 1.08996 * 110.59878 * 118.53002 * 15 14 12 17 17 C 1.50707 * 110.59573 * 241.32191 * 15 14 12 18 18 C 1.38260 * 119.94816 * 38.27087 * 17 15 14 19 19 C 1.38148 * 120.05563 * 179.72793 * 18 17 15 20 20 C 1.38728 * 119.94121 * 0.54862 * 19 18 17 21 21 O 1.35902 * 120.05456 * 179.74864 * 20 19 18 22 22 C 1.38727 * 119.88990 * 359.72519 * 20 19 18 23 23 C 1.38141 * 119.94700 * 359.97438 * 22 20 19 24 24 C 1.34761 * 124.18016 * 269.72444 * 11 10 9 25 25 O 1.21234 * 127.15939 * 0.02562 * 24 11 10 26 26 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 28 28 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 29 29 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 30 30 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 31 31 H 0.96997 * 126.69082 * 180.02562 * 14 12 11 32 32 H 1.08000 * 119.97251 * 0.02562 * 18 17 15 33 33 H 1.07999 * 120.02814 * 180.27017 * 19 18 17 34 34 H 0.96703 * 114.00021 * 269.97766 * 21 20 19 35 35 H 1.08009 * 120.02523 * 179.97438 * 22 20 19 36 36 H 1.08005 * 119.97255 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 1.1380 -5.5827 -1.1041 13 8 1.3664 -5.1882 -2.2308 14 7 0.4796 -6.7235 -0.8304 15 6 0.4153 -6.8310 0.6374 16 1 -0.6204 -6.8317 0.9768 17 6 1.1274 -8.0724 1.1097 18 6 2.2969 -8.4747 0.4915 19 6 2.9545 -9.6092 0.9263 20 6 2.4344 -10.3512 1.9768 21 8 3.0767 -11.4704 2.4031 22 6 1.2578 -9.9485 2.5917 23 6 0.6073 -8.8099 2.1573 24 6 1.1385 -5.5883 1.1176 25 8 1.3363 -5.2540 2.2660 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 2.8727 -3.6047 -0.8877 30 1 2.8713 -3.6038 0.8923 31 1 0.1178 -7.3526 -1.4740 32 1 2.6992 -7.8990 -0.3289 33 1 3.8702 -9.9206 0.4459 34 1 2.7971 -12.2797 1.9535 35 1 0.8508 -10.5248 3.4095 36 1 -0.3084 -8.4958 2.6360 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349129987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:58 Heat of formation + Delta-G solvation = -92.715633 kcal Electronic energy + Delta-G solvation = -22480.362486 eV Core-core repulsion = 18929.238547 eV Total energy + Delta-G solvation = -3551.123939 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.64966 -40.70345 -39.76521 -38.18850 -37.18681 -36.71942 -35.14573 -32.11670 -31.85099 -31.41084 -27.87817 -26.72836 -24.30311 -24.21178 -23.83659 -22.51150 -21.47171 -19.42717 -19.29251 -19.03953 -18.22403 -18.03310 -16.83297 -16.66809 -16.57980 -16.45403 -16.15684 -15.65240 -15.37097 -15.12672 -15.06213 -14.82500 -14.63104 -14.41045 -13.91053 -13.49570 -13.06468 -12.96482 -12.77654 -12.64265 -12.22181 -12.19428 -11.92630 -11.48439 -11.42696 -11.05516 -10.81492 -10.60831 -10.58481 -10.04336 -9.63725 -8.77183 -6.48626 -0.03098 0.29969 0.46253 1.16094 1.52865 1.61909 1.80925 1.85397 2.02584 2.45724 2.55394 3.03840 3.10030 3.18618 3.36541 3.67412 3.86820 3.95322 4.10270 4.24481 4.30045 4.33620 4.42861 4.52379 4.53081 4.77307 4.97210 5.09473 5.14961 5.17796 5.35575 5.39928 5.71069 5.75065 5.82445 5.98958 6.07329 6.25619 6.44456 6.83207 6.99733 7.34582 8.63883 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.031061 B = 0.003438 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.247586 B = 8142.445760 C = 8354.355097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.037 4.037 3 Si 1.123 2.877 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.282 1.282 7 C -0.621 4.621 8 H 0.062 0.938 9 C 0.009 3.991 10 C 0.141 3.859 11 N -0.580 5.580 12 C 0.698 3.302 13 O -0.578 6.578 14 N -0.696 5.696 15 C 0.155 3.845 16 H 0.172 0.828 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.154 4.154 20 C 0.116 3.884 21 O -0.509 6.509 22 C -0.147 4.147 23 C -0.070 4.070 24 C 0.519 3.481 25 O -0.492 6.492 26 H 0.253 0.747 27 H -0.011 1.011 28 H -0.012 1.012 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.455 0.545 32 H 0.116 0.884 33 H 0.140 0.860 34 H 0.414 0.586 35 H 0.155 0.845 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 -26.053 2.999 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.234 4.234 3 Si 0.942 3.058 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.208 1.208 7 C -0.659 4.659 8 H 0.080 0.920 9 C -0.029 4.029 10 C 0.021 3.979 11 N -0.325 5.325 12 C 0.399 3.601 13 O -0.454 6.454 14 N -0.362 5.362 15 C 0.046 3.954 16 H 0.189 0.811 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.172 4.172 20 C 0.071 3.929 21 O -0.323 6.323 22 C -0.165 4.165 23 C -0.088 4.088 24 C 0.307 3.693 25 O -0.363 6.363 26 H 0.062 0.938 27 H 0.008 0.992 28 H 0.006 0.994 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.303 0.697 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.274 0.726 35 H 0.172 0.828 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.295 -23.587 3.399 23.866 hybrid contribution -0.280 -2.006 -0.741 2.156 sum 1.015 -25.592 2.658 25.750 Atomic orbital electron populations 1.70921 1.08068 1.29692 1.48238 1.27592 0.96542 1.07104 0.92208 0.82886 0.74102 0.70502 0.78279 1.19140 1.19001 1.20782 1.22301 0.95153 0.92470 1.56020 0.91954 1.19343 0.95087 0.94212 0.94229 1.21571 0.94151 0.78810 1.03399 1.46695 1.53515 1.23743 1.08555 1.16047 0.78760 0.81643 0.83649 1.90988 1.61176 1.71331 1.21873 1.45362 1.59932 1.23431 1.07446 1.20914 1.02989 0.90493 0.80980 0.81085 1.19410 0.97206 0.95587 0.99745 1.20887 0.94192 0.96371 0.99335 1.21527 1.01481 0.96609 0.97627 1.18684 0.91392 0.89658 0.93148 1.84780 1.64891 1.17202 1.65460 1.21666 0.94695 0.98498 1.01674 1.21171 1.00568 0.93080 0.94024 1.21427 0.77973 0.85481 0.84458 1.90776 1.54723 1.71729 1.19064 0.93809 0.99239 0.99373 0.89517 0.89316 0.69656 0.86592 0.84221 0.72598 0.82764 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.61 13.65 21.45 0.29 -59.31 16 2 C -0.04 -2.20 5.46 84.66 0.46 -1.74 16 3 Si 1.12 51.07 29.90 68.60 2.05 53.12 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.62 -36.57 9.11 25.60 0.23 -36.33 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.01 0.50 4.61 29.85 0.14 0.64 16 10 C 0.14 6.31 5.64 86.38 0.49 6.79 16 11 N -0.58 -21.71 2.60 -773.11 -2.01 -23.72 16 12 C 0.70 23.91 8.62 179.44 1.55 25.45 16 13 O -0.58 -24.44 17.48 -3.84 -0.07 -24.50 16 14 N -0.70 -15.20 5.49 -463.19 -2.54 -17.74 16 15 C 0.15 3.21 3.90 43.63 0.17 3.38 16 16 H 0.17 2.38 8.04 -2.39 -0.02 2.36 16 17 C -0.12 -2.15 5.06 -19.85 -0.10 -2.25 16 18 C -0.09 -1.72 9.31 22.25 0.21 -1.52 16 19 C -0.15 -2.63 9.99 22.37 0.22 -2.41 16 20 C 0.12 1.79 6.70 22.50 0.15 1.94 16 21 O -0.51 -6.58 13.50 -92.45 -1.25 -7.82 16 22 C -0.15 -2.00 9.99 22.36 0.22 -1.78 16 23 C -0.07 -1.00 9.68 22.25 0.22 -0.79 16 24 C 0.52 17.07 7.59 87.94 0.67 17.74 16 25 O -0.49 -19.22 17.75 -2.89 -0.05 -19.27 16 26 H 0.25 16.48 7.22 -92.70 -0.67 15.81 16 27 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16 28 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 29 H 0.09 3.84 7.86 -2.39 -0.02 3.82 16 30 H 0.09 3.85 8.00 -2.39 -0.02 3.83 16 31 H 0.46 6.84 8.96 -92.71 -0.83 6.01 16 32 H 0.12 2.44 7.70 -2.91 -0.02 2.41 16 33 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.41 0.98 9.06 -74.06 -0.67 0.31 16 35 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.16 1.47 8.05 -2.91 -0.02 1.45 16 Total: -1.00 -82.37 322.13 0.79 -81.58 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -0.26 Total: 8.53 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 4.62 Total: 9.14 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -4.26 Total: -100.78 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -1.37 Total: -51.59 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -82.37 0.79 -81.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349129987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.133 kcal (2) G-P(sol) polarization free energy of solvation -82.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds