Wall clock time and date at job start Tue Mar 31 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48502 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46710 * 299.99438 * 3 2 1 6 6 H 1.48502 * 109.46911 * 59.99527 * 3 2 1 7 7 C 1.37878 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00051 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46816 * 179.97438 * 9 7 2 11 11 C 1.36372 * 125.85565 * 85.03211 * 10 9 7 12 12 C 1.35080 * 108.92756 * 179.97438 * 11 10 9 13 13 C 1.41079 * 108.23985 * 0.02562 * 12 11 10 14 14 N 1.33077 * 126.37200 * 179.97438 * 13 12 11 15 15 C 1.33662 * 120.00177 * 0.02562 * 14 13 12 16 16 O 1.21852 * 119.99447 * 359.97438 * 15 14 13 17 17 C 1.48229 * 120.00325 * 180.02562 * 15 14 13 18 18 C 1.39822 * 120.93187 * 0.02562 * 17 15 14 19 19 C 1.38035 * 119.04596 * 179.97438 * 18 17 15 20 20 N 1.31873 * 120.96719 * 0.02562 * 19 18 17 21 21 C 1.31748 * 122.06838 * 359.97438 * 20 19 18 22 22 C 1.38485 * 120.84536 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.53365 * 179.97438 * 22 21 20 24 24 N 1.37387 * 107.25537 * 0.23808 * 13 12 11 25 25 H 0.96997 * 126.34967 * 179.76022 * 24 13 12 26 26 H 0.97006 * 120.00111 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46975 * 60.00426 * 9 7 2 28 28 H 1.08997 * 109.47269 * 300.00084 * 9 7 2 29 29 H 1.08010 * 125.53410 * 0.02562 * 11 10 9 30 30 H 1.08004 * 125.88248 * 179.97438 * 12 11 10 31 31 H 1.08001 * 120.47524 * 0.24857 * 18 17 15 32 32 H 1.08000 * 119.51556 * 179.97438 * 19 18 17 33 33 H 1.08001 * 119.57892 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7948 -4.1576 1.1017 12 6 3.6082 -5.1623 0.7099 13 6 3.5365 -5.2661 -0.6953 14 7 4.1941 -6.1370 -1.4568 15 6 5.0183 -7.0270 -0.8953 16 8 5.1678 -7.0404 0.3139 17 6 5.7512 -7.9967 -1.7436 18 6 5.5954 -7.9975 -3.1332 19 6 6.2974 -8.9175 -3.8857 20 7 7.1055 -9.7878 -3.3126 21 6 7.2829 -9.8236 -2.0076 22 6 6.6187 -8.9374 -1.1761 23 9 6.8050 -8.9799 0.1613 24 7 2.6661 -4.2969 -1.1316 25 1 2.4165 -4.1205 -2.0522 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8898 28 1 0.6239 -2.5567 0.8902 29 1 2.6378 -3.8383 2.1215 30 1 4.2105 -5.7794 1.3602 31 1 4.9388 -7.2856 -3.6111 32 1 6.1824 -8.9251 -4.9595 33 1 7.9550 -10.5533 -1.5807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355543786.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:56 Heat of formation + Delta-G solvation = 42.955600 kcal Electronic energy + Delta-G solvation = -21399.771730 eV Core-core repulsion = 17763.363383 eV Total energy + Delta-G solvation = -3636.408347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 9.97 seconds Orbital eigenvalues (eV) -49.94736 -42.42280 -41.10660 -39.69511 -36.00626 -34.71121 -33.75512 -32.63077 -32.23565 -31.82571 -28.61980 -26.31864 -24.87723 -24.38630 -23.11633 -22.79107 -21.09713 -19.00375 -18.68765 -18.44450 -18.09521 -17.66176 -16.94863 -16.77790 -16.70975 -16.35902 -15.80190 -15.54518 -15.26091 -15.10952 -14.66472 -14.45779 -14.42329 -14.34783 -14.19256 -13.70410 -13.11185 -13.03511 -12.77289 -12.35805 -12.10447 -11.30389 -11.27764 -10.88854 -10.79705 -10.73183 -10.60066 -10.03305 -9.99182 -8.67635 -8.32574 -6.58191 -0.55561 -0.06168 0.29419 0.50244 1.36559 1.42491 1.50077 1.52785 2.29088 2.47904 2.57022 2.92793 2.98339 3.04116 3.17932 3.48634 3.73071 3.82797 3.85576 4.23677 4.36831 4.43971 4.49876 4.82015 4.84919 4.87289 4.95262 5.09335 5.20012 5.49360 5.57521 5.67494 5.87062 6.01613 6.33366 6.53959 6.67815 6.73774 7.15977 7.63113 8.64368 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.032357 B = 0.003009 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.137431 B = 9303.394736 C = 9573.676209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.032 3.968 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.566 4.566 8 H 0.060 0.940 9 C 0.265 3.735 10 N -0.339 5.339 11 C 0.183 3.817 12 C -0.345 4.345 13 C 0.454 3.546 14 N -0.691 5.691 15 C 0.514 3.486 16 O -0.596 6.596 17 C -0.115 4.115 18 C -0.085 4.085 19 C 0.085 3.915 20 N -0.458 5.458 21 C 0.071 3.929 22 C 0.067 3.933 23 F -0.128 7.128 24 N -0.454 5.454 25 H 0.456 0.544 26 H 0.274 0.726 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.227 0.773 30 H 0.173 0.827 31 H 0.167 0.833 32 H 0.206 0.794 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -11.086 -4.663 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.604 4.604 8 H 0.078 0.922 9 C 0.148 3.852 10 N -0.123 5.123 11 C 0.037 3.963 12 C -0.377 4.377 13 C 0.205 3.795 14 N -0.456 5.456 15 C 0.300 3.700 16 O -0.479 6.479 17 C -0.127 4.127 18 C -0.105 4.105 19 C -0.071 4.071 20 N -0.167 5.167 21 C -0.087 4.087 22 C 0.045 3.955 23 F -0.106 7.106 24 N -0.177 5.177 25 H 0.305 0.695 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.244 0.756 30 H 0.190 0.810 31 H 0.185 0.815 32 H 0.223 0.777 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 6.228 -11.312 -5.482 14.028 hybrid contribution -0.274 1.755 1.178 2.131 sum 5.954 -9.557 -4.304 12.054 Atomic orbital electron populations 1.69960 1.07089 1.29004 1.48912 1.25571 0.95604 1.02306 0.93611 0.85415 0.78647 0.79033 0.78070 1.19761 1.20416 1.19984 1.21619 0.93780 0.90829 1.54210 0.92170 1.19844 0.85388 0.79191 1.00772 1.48027 1.38867 1.28438 0.97011 1.23456 0.89183 0.90416 0.93289 1.22394 1.12469 1.07853 0.94976 1.19266 0.84601 0.85158 0.90515 1.68705 1.24339 1.15757 1.36819 1.19111 0.81572 0.83467 0.85806 1.90646 1.66423 1.73236 1.17632 1.20559 0.98754 0.96988 0.96360 1.22629 0.98152 0.98810 0.90930 1.23441 0.91289 0.89840 1.02569 1.67685 1.16074 1.22136 1.10763 1.23206 0.99044 0.97784 0.88709 1.19300 0.99069 0.98406 0.78770 1.91534 1.93536 1.95483 1.30071 1.44551 1.40824 1.28277 1.04013 0.69493 0.91651 0.93432 0.90723 0.75625 0.80994 0.81511 0.77746 0.78651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.31 13.29 21.45 0.28 -44.03 16 2 C 0.03 1.47 5.46 84.65 0.46 1.93 16 3 Si 0.96 37.74 29.54 68.60 2.03 39.77 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.57 -25.34 9.39 25.60 0.24 -25.10 16 8 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.26 10.19 6.19 85.63 0.53 10.72 16 10 N -0.34 -11.44 3.63 -350.80 -1.27 -12.71 16 11 C 0.18 5.57 11.45 83.26 0.95 6.53 16 12 C -0.35 -12.27 9.52 22.24 0.21 -12.06 16 13 C 0.45 16.61 8.07 133.88 1.08 17.69 16 14 N -0.69 -25.88 9.77 -311.16 -3.04 -28.92 16 15 C 0.51 20.28 7.71 87.07 0.67 20.95 16 16 O -0.60 -26.46 12.41 -4.84 -0.06 -26.52 16 17 C -0.12 -3.71 5.92 -19.81 -0.12 -3.83 16 18 C -0.08 -2.06 9.67 22.60 0.22 -1.84 16 19 C 0.08 1.63 11.17 84.64 0.95 2.57 16 20 N -0.46 -10.13 10.33 -195.83 -2.02 -12.15 16 21 C 0.07 1.63 11.17 84.76 0.95 2.57 16 22 C 0.07 2.02 7.33 22.75 0.17 2.19 16 23 F -0.13 -4.38 15.71 44.97 0.71 -3.68 16 24 N -0.45 -14.80 7.38 -54.81 -0.40 -15.21 16 25 H 0.46 12.74 8.96 -213.29 -1.91 10.83 16 26 H 0.27 12.68 8.31 -92.70 -0.77 11.90 16 27 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.23 5.02 8.06 -2.91 -0.02 5.00 16 30 H 0.17 6.65 5.77 -2.91 -0.02 6.64 16 31 H 0.17 3.69 7.65 -2.91 -0.02 3.67 16 32 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -62.09 305.38 1.79 -60.29 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -0.73 Total: 20.83 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 6.31 Total: 22.32 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -6.46 Total: -113.01 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.06 Total: -26.52 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.71 Total: -3.68 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -62.09 1.79 -60.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355543786.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.249 kcal (2) G-P(sol) polarization free energy of solvation -62.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.97 seconds