Wall clock time and date at job start Tue Mar 31 2020 08:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46979 * 2 1 4 4 C 1.36939 * 119.99754 * 274.00393 * 3 2 1 5 5 H 1.08008 * 119.99499 * 174.16601 * 4 3 2 6 6 C 1.38806 * 120.00353 * 354.17065 * 4 3 2 7 7 N 1.31614 * 120.00094 * 34.12577 * 6 4 3 8 8 Si 1.86810 * 119.99937 * 214.12298 * 6 4 3 9 9 H 1.48499 * 109.46658 * 84.99878 * 8 6 4 10 10 H 1.48496 * 109.47001 * 205.00099 * 8 6 4 11 11 H 1.48498 * 109.46809 * 325.00135 * 8 6 4 12 12 C 1.46501 * 119.99956 * 94.00856 * 3 2 1 13 13 C 1.50696 * 109.46758 * 270.00192 * 12 3 2 14 14 C 1.36230 * 120.12472 * 269.71968 * 13 12 3 15 15 Cl 1.73598 * 119.48551 * 359.97438 * 14 13 12 16 16 C 1.39442 * 121.03144 * 179.76575 * 14 13 12 17 17 C 1.36139 * 120.85671 * 0.49665 * 16 14 13 18 18 C 1.40407 * 119.63285 * 359.77078 * 17 16 14 19 19 C 1.40750 * 121.37683 * 179.97438 * 18 17 16 20 20 C 1.36592 * 118.16123 * 180.02562 * 19 18 17 21 21 C 1.39321 * 119.94025 * 359.97438 * 20 19 18 22 22 N 1.31086 * 121.75313 * 0.02635 * 21 20 19 23 23 C 1.33702 * 121.31273 * 359.95533 * 22 21 20 24 24 H 1.08999 * 109.47032 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46967 * 299.99730 * 1 2 3 26 26 H 1.09000 * 109.47445 * 59.99718 * 1 2 3 27 27 H 1.09001 * 109.47072 * 240.00814 * 2 1 3 28 28 H 1.09000 * 109.47445 * 120.00282 * 2 1 3 29 29 H 0.97001 * 120.00066 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46830 * 149.99878 * 12 3 2 31 31 H 1.09005 * 109.46885 * 29.99848 * 12 3 2 32 32 H 1.07998 * 119.57322 * 180.24793 * 16 14 13 33 33 H 1.08007 * 120.18780 * 179.79630 * 17 16 14 34 34 H 1.08008 * 120.91941 * 0.04314 * 19 18 17 35 35 H 1.07994 * 120.02625 * 179.97438 * 20 19 18 36 36 H 1.08000 * 119.12051 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1684 2.0544 -1.1831 5 1 2.4374 3.1004 -1.1788 6 6 1.9748 1.3924 -2.3877 7 7 1.0683 0.4425 -2.4783 8 14 3.0007 1.8500 -3.8803 9 1 4.2868 1.1086 -3.8429 10 1 2.2603 1.4949 -5.1175 11 1 3.2705 3.3102 -3.8667 12 6 2.3460 2.0423 1.2656 13 6 1.1221 2.7413 1.7989 14 6 0.8711 4.0361 1.4577 15 17 1.9714 4.8714 0.4064 16 6 -0.2581 4.6996 1.9362 17 6 -1.1364 4.0733 2.7668 18 6 -0.9059 2.7404 3.1434 19 6 -1.7894 2.0578 4.0005 20 6 -1.5012 0.7626 4.3246 21 6 -0.3589 0.1543 3.8087 22 7 0.4620 0.7928 3.0106 23 6 0.2380 2.0617 2.6540 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.9333 -0.0204 -3.3200 30 1 3.1382 2.7724 1.0997 31 1 2.6830 1.2983 1.9875 32 1 -0.4363 5.7249 1.6474 33 1 -2.0059 4.5986 3.1337 34 1 -2.6710 2.5446 4.3908 35 1 -2.1583 0.2106 4.9802 36 1 -0.1440 -0.8704 4.0733 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355654949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:15 Heat of formation + Delta-G solvation = 85.930591 kcal Electronic energy + Delta-G solvation = -21330.221373 eV Core-core repulsion = 18227.553280 eV Total energy + Delta-G solvation = -3102.668093 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.49512 -37.25836 -35.97430 -35.47376 -33.31761 -31.43476 -30.22984 -30.01215 -28.69101 -25.66775 -23.89217 -23.26023 -23.06778 -20.96481 -19.96090 -17.98393 -16.88706 -16.64830 -16.30207 -15.07755 -14.64167 -14.23256 -14.07146 -13.82655 -13.46683 -13.28127 -12.99106 -12.78149 -12.39496 -12.02074 -11.72507 -11.52618 -11.48085 -11.07673 -10.85309 -10.73511 -10.54767 -10.39367 -10.33727 -10.04569 -9.88207 -9.38584 -9.24219 -9.07374 -8.26784 -8.22050 -7.69621 -7.00349 -5.92735 -2.93760 0.69195 1.13926 2.32690 2.76125 3.20655 3.39032 3.46838 3.48914 4.40068 4.53245 4.71468 4.87594 5.04666 5.13631 5.22098 5.27954 5.42611 5.51214 5.62171 5.79178 6.02974 6.05073 6.23644 6.34099 6.43001 6.65171 6.72183 6.74516 6.81191 6.93265 7.02326 7.15951 7.17855 7.28952 7.74649 7.79845 8.16338 8.25075 8.34060 9.15462 9.78309 10.23949 11.10412 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.007161 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.696581 B = 3909.322592 C = 4941.973563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.165 3.835 3 N -0.565 5.565 4 C -0.241 4.241 5 H 0.094 0.906 6 C 0.001 3.999 7 N -0.870 5.870 8 Si 0.887 3.113 9 H -0.286 1.286 10 H -0.293 1.293 11 H -0.279 1.279 12 C 0.184 3.816 13 C -0.056 4.056 14 C -0.034 4.034 15 Cl -0.065 7.065 16 C -0.092 4.092 17 C -0.128 4.128 18 C -0.096 4.096 19 C -0.073 4.073 20 C -0.178 4.178 21 C 0.112 3.888 22 N -0.446 5.446 23 C 0.150 3.850 24 H 0.013 0.987 25 H 0.019 0.981 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.018 0.982 29 H 0.254 0.746 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 3.700 12.343 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 N -0.280 5.280 4 C -0.369 4.369 5 H 0.112 0.888 6 C -0.198 4.198 7 N -0.512 5.512 8 Si 0.716 3.284 9 H -0.213 1.213 10 H -0.220 1.220 11 H -0.204 1.204 12 C 0.057 3.943 13 C -0.064 4.064 14 C -0.065 4.065 15 Cl -0.036 7.036 16 C -0.111 4.111 17 C -0.149 4.149 18 C -0.098 4.098 19 C -0.099 4.099 20 C -0.198 4.198 21 C -0.061 4.061 22 N -0.154 5.154 23 C 0.027 3.973 24 H 0.032 0.968 25 H 0.038 0.962 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.289 3.236 11.599 12.483 hybrid contribution -0.802 0.685 -0.679 1.254 sum -4.091 3.921 10.920 12.302 Atomic orbital electron populations 1.22271 0.99250 0.97826 1.01076 1.21031 0.92646 0.84030 0.98285 1.45012 1.72503 1.10155 1.00344 1.19813 1.37972 0.96123 0.83007 0.88801 1.24822 0.98729 0.98683 0.97578 1.70343 1.28557 1.26968 1.25342 0.86482 0.81493 0.78240 0.82199 1.21338 1.22012 1.20445 1.19966 0.90993 0.95412 0.87976 1.20649 1.02454 0.90841 0.92456 1.20176 0.94113 0.93201 0.99012 1.98336 1.62803 1.77503 1.64932 1.20673 0.93029 1.00104 0.97287 1.20573 1.00132 0.93593 1.00600 1.18841 0.96226 0.95560 0.99154 1.21285 0.98167 0.94655 0.95816 1.21763 0.99441 0.96052 1.02529 1.22814 0.90695 0.99756 0.92809 1.68013 1.29776 1.07360 1.10273 1.18457 0.92696 0.90164 0.95959 0.96784 0.96230 0.89903 0.90228 0.96340 0.93524 0.91834 0.91842 0.85616 0.85571 0.85210 0.85351 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.69 37.16 0.36 -3.19 16 2 C 0.16 4.04 5.72 -4.04 -0.02 4.02 16 3 N -0.57 -13.92 2.52 -174.61 -0.44 -14.36 16 4 C -0.24 -6.35 9.41 -15.06 -0.14 -6.49 16 5 H 0.09 2.42 5.71 -52.48 -0.30 2.12 16 6 C 0.00 0.03 4.90 -17.43 -0.09 -0.06 16 7 N -0.87 -24.06 8.56 55.49 0.47 -23.58 16 8 Si 0.89 21.32 29.67 -169.99 -5.04 16.28 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.18 3.95 5.22 -5.19 -0.03 3.92 16 13 C -0.06 -1.13 5.43 -104.49 -0.57 -1.70 16 14 C -0.03 -0.64 6.27 -39.86 -0.25 -0.89 16 15 Cl -0.06 -1.21 24.77 -51.86 -1.28 -2.49 16 16 C -0.09 -1.48 9.72 -39.89 -0.39 -1.87 16 17 C -0.13 -1.92 9.77 -39.52 -0.39 -2.30 16 18 C -0.10 -1.58 5.74 -106.80 -0.61 -2.19 16 19 C -0.07 -0.97 9.90 -39.23 -0.39 -1.36 16 20 C -0.18 -2.23 10.03 -39.77 -0.40 -2.63 16 21 C 0.11 1.64 11.14 -17.47 -0.19 1.44 16 22 N -0.45 -8.19 8.15 -10.98 -0.09 -8.28 16 23 C 0.15 2.86 5.16 -84.86 -0.44 2.42 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.02 0.45 5.00 -51.93 -0.26 0.19 16 26 H 0.08 2.30 6.27 -51.93 -0.33 1.97 16 27 H 0.08 2.15 5.90 -51.93 -0.31 1.84 16 28 H 0.02 0.43 7.85 -51.93 -0.41 0.02 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.06 1.33 6.71 -51.93 -0.35 0.98 16 31 H 0.06 1.33 7.28 -51.93 -0.38 0.95 16 32 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 304.55 15.07 4.59 4.59 Total: -1.00 -29.13 304.55 -9.33 -38.46 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.00 Total: 0.26 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.54 Total: -10.88 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.05 Total: -46.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.04 Total: 16.28 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.28 Total: -2.49 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.13 -9.33 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355654949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.395 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds