Wall clock time and date at job start Tue Mar 31 2020 08:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46979 * 2 1 4 4 C 1.36939 * 119.99754 * 274.00393 * 3 2 1 5 5 H 1.08008 * 119.99499 * 174.16601 * 4 3 2 6 6 C 1.38806 * 120.00353 * 354.17065 * 4 3 2 7 7 N 1.31614 * 120.00094 * 34.12577 * 6 4 3 8 8 Si 1.86810 * 119.99937 * 214.12298 * 6 4 3 9 9 H 1.48499 * 109.46658 * 84.99878 * 8 6 4 10 10 H 1.48496 * 109.47001 * 205.00099 * 8 6 4 11 11 H 1.48498 * 109.46809 * 325.00135 * 8 6 4 12 12 C 1.46501 * 119.99956 * 94.00856 * 3 2 1 13 13 C 1.50696 * 109.46758 * 270.00192 * 12 3 2 14 14 C 1.36230 * 120.12472 * 269.71968 * 13 12 3 15 15 Cl 1.73598 * 119.48551 * 359.97438 * 14 13 12 16 16 C 1.39442 * 121.03144 * 179.76575 * 14 13 12 17 17 C 1.36139 * 120.85671 * 0.49665 * 16 14 13 18 18 C 1.40407 * 119.63285 * 359.77078 * 17 16 14 19 19 C 1.40750 * 121.37683 * 179.97438 * 18 17 16 20 20 C 1.36592 * 118.16123 * 180.02562 * 19 18 17 21 21 C 1.39321 * 119.94025 * 359.97438 * 20 19 18 22 22 N 1.31086 * 121.75313 * 0.02635 * 21 20 19 23 23 C 1.33702 * 121.31273 * 359.95533 * 22 21 20 24 24 H 1.08999 * 109.47032 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46967 * 299.99730 * 1 2 3 26 26 H 1.09000 * 109.47445 * 59.99718 * 1 2 3 27 27 H 1.09001 * 109.47072 * 240.00814 * 2 1 3 28 28 H 1.09000 * 109.47445 * 120.00282 * 2 1 3 29 29 H 0.97001 * 120.00066 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.46830 * 149.99878 * 12 3 2 31 31 H 1.09005 * 109.46885 * 29.99848 * 12 3 2 32 32 H 1.07998 * 119.57322 * 180.24793 * 16 14 13 33 33 H 1.08007 * 120.18780 * 179.79630 * 17 16 14 34 34 H 1.08008 * 120.91941 * 0.04314 * 19 18 17 35 35 H 1.07994 * 120.02625 * 179.97438 * 20 19 18 36 36 H 1.08000 * 119.12051 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1684 2.0544 -1.1831 5 1 2.4374 3.1004 -1.1788 6 6 1.9748 1.3924 -2.3877 7 7 1.0683 0.4425 -2.4783 8 14 3.0007 1.8500 -3.8803 9 1 4.2868 1.1086 -3.8429 10 1 2.2603 1.4949 -5.1175 11 1 3.2705 3.3102 -3.8667 12 6 2.3460 2.0423 1.2656 13 6 1.1221 2.7413 1.7989 14 6 0.8711 4.0361 1.4577 15 17 1.9714 4.8714 0.4064 16 6 -0.2581 4.6996 1.9362 17 6 -1.1364 4.0733 2.7668 18 6 -0.9059 2.7404 3.1434 19 6 -1.7894 2.0578 4.0005 20 6 -1.5012 0.7626 4.3246 21 6 -0.3589 0.1543 3.8087 22 7 0.4620 0.7928 3.0106 23 6 0.2380 2.0617 2.6540 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 0.9333 -0.0204 -3.3200 30 1 3.1382 2.7724 1.0997 31 1 2.6830 1.2983 1.9875 32 1 -0.4363 5.7249 1.6474 33 1 -2.0059 4.5986 3.1337 34 1 -2.6710 2.5446 4.3908 35 1 -2.1583 0.2106 4.9802 36 1 -0.1440 -0.8704 4.0733 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355654949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:07 Heat of formation + Delta-G solvation = 70.320102 kcal Electronic energy + Delta-G solvation = -21330.898294 eV Core-core repulsion = 18227.553280 eV Total energy + Delta-G solvation = -3103.345015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77020 -38.66857 -37.65111 -36.88163 -34.72225 -33.06454 -31.89812 -31.26338 -30.35675 -27.34268 -25.30789 -24.77653 -24.42303 -22.64638 -21.52635 -19.24063 -18.59972 -17.94324 -17.65958 -16.89353 -15.91325 -15.80040 -15.51205 -15.26367 -15.00322 -14.92940 -14.33733 -14.03619 -13.84751 -13.72870 -13.31146 -13.19539 -13.05997 -12.72891 -12.51213 -12.32276 -12.25468 -12.06954 -11.94192 -11.74947 -11.49989 -11.12633 -10.94147 -10.32281 -10.10240 -9.54202 -9.09716 -8.81462 -7.83096 -4.96420 -0.47327 -0.12163 1.10175 1.30100 1.46332 1.51836 1.56292 1.97734 2.57944 3.18529 3.25405 3.53168 3.70184 3.84709 3.93837 4.01444 4.15084 4.18858 4.36717 4.60538 4.65360 4.80527 4.82626 4.90784 5.05315 5.11676 5.14033 5.20666 5.23438 5.34536 5.39967 5.44975 5.62107 5.77832 5.84449 5.94533 6.17794 6.35868 7.13245 7.25852 7.96765 8.40243 9.21237 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.007161 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.696581 B = 3909.322592 C = 4941.973563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.182 3.818 3 N -0.590 5.590 4 C -0.250 4.250 5 H 0.092 0.908 6 C -0.044 4.044 7 N -0.904 5.904 8 Si 0.929 3.071 9 H -0.292 1.292 10 H -0.301 1.301 11 H -0.277 1.277 12 C 0.191 3.809 13 C -0.080 4.080 14 C -0.032 4.032 15 Cl -0.071 7.071 16 C -0.118 4.118 17 C -0.090 4.090 18 C -0.123 4.123 19 C -0.059 4.059 20 C -0.169 4.169 21 C 0.115 3.885 22 N -0.488 5.488 23 C 0.124 3.876 24 H 0.018 0.982 25 H 0.025 0.975 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.024 0.976 29 H 0.243 0.757 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.153 0.847 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 4.750 16.050 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.057 3.943 3 N -0.310 5.310 4 C -0.379 4.379 5 H 0.109 0.891 6 C -0.239 4.239 7 N -0.551 5.551 8 Si 0.759 3.241 9 H -0.220 1.220 10 H -0.229 1.229 11 H -0.202 1.202 12 C 0.064 3.936 13 C -0.085 4.085 14 C -0.062 4.062 15 Cl -0.042 7.042 16 C -0.136 4.136 17 C -0.109 4.109 18 C -0.125 4.125 19 C -0.085 4.085 20 C -0.188 4.188 21 C -0.057 4.057 22 N -0.197 5.197 23 C 0.002 3.998 24 H 0.037 0.963 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.171 0.829 33 H 0.192 0.808 34 H 0.193 0.807 35 H 0.192 0.808 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.159 4.377 15.395 17.149 hybrid contribution -0.111 0.478 -1.194 1.290 sum -6.270 4.854 14.201 16.265 Atomic orbital electron populations 1.22025 0.99208 0.97487 0.99457 1.20665 0.92518 0.84360 0.96775 1.44602 1.74881 1.10567 1.00923 1.19835 1.38543 0.95740 0.83817 0.89078 1.25247 0.99883 0.99608 0.99204 1.70465 1.30348 1.29367 1.24921 0.85808 0.80245 0.77748 0.80319 1.21988 1.22859 1.20208 1.19781 0.91579 0.95154 0.87044 1.20623 1.00805 0.92226 0.94837 1.20629 0.94755 0.93286 0.97495 1.98336 1.63168 1.77373 1.65282 1.21012 0.92684 1.01580 0.98360 1.21220 0.99874 0.92741 0.97056 1.19234 0.96360 0.96518 1.00382 1.21841 0.98209 0.94757 0.93665 1.22259 0.98696 0.96061 1.01828 1.23535 0.90609 1.00799 0.90793 1.67989 1.31906 1.07577 1.12198 1.18592 0.93703 0.90901 0.96574 0.96288 0.95575 0.93365 0.93384 0.95818 0.94687 0.92369 0.92146 0.82933 0.80794 0.80746 0.80791 0.80523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.13 9.69 71.98 0.70 -5.44 16 2 C 0.18 9.31 5.72 86.38 0.49 9.81 16 3 N -0.59 -30.27 2.52 -706.33 -1.78 -32.04 16 4 C -0.25 -13.81 9.41 84.03 0.79 -13.02 16 5 H 0.09 4.91 5.71 -2.91 -0.02 4.89 16 6 C -0.04 -2.51 4.90 84.86 0.42 -2.09 16 7 N -0.90 -53.05 8.56 21.65 0.19 -52.86 16 8 Si 0.93 46.10 29.67 68.60 2.04 48.13 16 9 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 10 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 12 C 0.19 8.46 5.22 85.63 0.45 8.91 16 13 C -0.08 -3.21 5.43 -19.78 -0.11 -3.31 16 14 C -0.03 -1.18 6.27 22.09 0.14 -1.04 16 15 Cl -0.07 -2.64 24.77 -2.72 -0.07 -2.71 16 16 C -0.12 -3.42 9.72 22.07 0.21 -3.21 16 17 C -0.09 -2.22 9.77 22.31 0.22 -2.01 16 18 C -0.12 -3.51 5.74 -21.28 -0.12 -3.63 16 19 C -0.06 -1.19 9.90 22.50 0.22 -0.97 16 20 C -0.17 -3.21 10.03 22.15 0.22 -2.99 16 21 C 0.12 2.94 11.14 85.06 0.95 3.89 16 22 N -0.49 -17.06 8.15 -188.65 -1.54 -18.59 16 23 C 0.12 4.49 5.16 40.28 0.21 4.69 16 24 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.03 1.22 5.00 -2.39 -0.01 1.21 16 26 H 0.05 2.77 6.27 -2.39 -0.01 2.75 16 27 H 0.05 2.75 5.90 -2.39 -0.01 2.74 16 28 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 29 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.06 2.55 6.71 -2.39 -0.02 2.53 16 31 H 0.06 2.62 7.28 -2.38 -0.02 2.61 16 32 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.18 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -68.75 304.55 4.73 -64.02 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.10 Total: 4.48 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.79 Total: -10.41 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -3.13 Total: -103.50 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.04 Total: 48.13 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.07 Total: -2.71 kcal Total: -68.75 4.73 -64.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355654949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.338 kcal (2) G-P(sol) polarization free energy of solvation -68.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds