Wall clock time and date at job start Tue Mar 31 2020 08:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46955 * 2 1 4 4 C 1.46492 * 119.99699 * 269.99845 * 3 2 1 5 5 C 1.50706 * 109.47172 * 269.99805 * 4 3 2 6 6 H 1.08001 * 119.99960 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00222 * 180.02562 * 5 4 3 8 8 N 1.31525 * 119.99907 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47198 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46987 * 119.99946 * 9 7 5 12 12 H 1.48499 * 109.46637 * 239.99432 * 9 7 5 13 13 C 1.38433 * 120.00110 * 89.99947 * 3 2 1 14 14 N 1.30224 * 125.58815 * 180.02562 * 13 3 2 15 15 N 1.26253 * 117.65604 * 179.73611 * 14 13 3 16 16 C 1.30420 * 116.37690 * 359.97438 * 15 14 13 17 17 C 1.47732 * 126.14666 * 179.97438 * 16 15 14 18 18 C 1.39597 * 119.74878 * 359.97284 * 17 16 15 19 19 C 1.38308 * 119.04875 * 179.97438 * 18 17 16 20 20 C 1.38856 * 118.53413 * 359.97438 * 19 18 17 21 21 C 1.38245 * 119.41369 * 0.02562 * 20 19 18 22 22 N 1.31745 * 120.91789 * 359.73766 * 21 20 19 23 23 S 1.71287 * 125.58513 * 359.71677 * 13 3 2 24 24 H 1.08995 * 109.47263 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47444 * 300.00080 * 1 2 3 26 26 H 1.09004 * 109.46808 * 60.00080 * 1 2 3 27 27 H 1.08999 * 109.47444 * 239.99920 * 2 1 3 28 28 H 1.09001 * 109.47044 * 119.99444 * 2 1 3 29 29 H 1.08997 * 109.47838 * 30.00017 * 4 3 2 30 30 H 1.09000 * 109.47361 * 150.00396 * 4 3 2 31 31 H 0.96996 * 119.99742 * 180.02562 * 8 7 5 32 32 H 1.08005 * 120.48006 * 0.02562 * 18 17 16 33 33 H 1.08003 * 120.73713 * 180.02562 * 19 18 17 34 34 H 1.08007 * 120.29176 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.53999 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1495 2.3905 -2.8774 8 7 3.3494 3.1265 -3.6177 9 14 5.9135 2.0964 -3.4169 10 1 6.6008 1.2405 -2.4168 11 1 5.9205 1.4182 -4.7380 12 1 6.6215 3.3973 -3.5246 13 6 2.2490 2.0339 1.1989 14 7 2.6805 3.2560 1.3256 15 7 2.8339 3.7049 2.4957 16 6 2.5409 2.8909 3.4716 17 6 2.6403 3.1896 4.9150 18 6 3.0841 4.4452 5.3336 19 6 3.1710 4.7094 6.6885 20 6 2.8112 3.7106 7.5835 21 6 2.3800 2.4892 7.1004 22 7 2.3013 2.2632 5.8048 23 16 2.0065 1.3687 2.7586 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 3.6755 3.5169 -4.4435 32 1 3.3548 5.1998 4.6100 33 1 3.5105 5.6716 7.0425 34 1 2.8678 3.8864 8.6476 35 1 2.1000 1.7107 7.7947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360997462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:02 Heat of formation + Delta-G solvation = 104.003661 kcal Electronic energy + Delta-G solvation = -19709.545219 eV Core-core repulsion = 16641.997290 eV Total energy + Delta-G solvation = -3067.547928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49120 -39.83356 -37.09504 -32.90940 -32.75913 -32.34672 -30.87655 -28.98210 -27.36232 -25.48656 -23.68158 -23.47005 -23.00727 -21.63780 -19.38639 -18.42865 -17.27210 -16.54749 -16.12203 -16.04710 -15.37020 -15.20013 -14.84771 -14.24297 -13.93600 -13.87522 -13.39817 -13.16725 -13.01819 -12.68748 -12.22282 -11.92467 -11.89019 -11.36651 -11.12325 -10.93496 -10.70713 -10.62195 -10.26327 -10.04805 -9.99888 -9.67637 -9.51982 -9.38057 -9.31066 -8.67987 -8.53439 -7.11842 -6.13057 -4.20596 0.50076 1.20216 1.25599 1.68615 1.90403 3.25104 3.27448 3.33477 3.35716 3.43467 3.90995 3.94232 4.36781 4.71982 4.75194 4.96429 5.06833 5.09972 5.20157 5.35176 5.38269 5.54506 5.55742 5.68746 5.81387 5.90664 6.02425 6.04581 6.15324 6.33215 6.58293 6.68896 7.20843 7.52792 7.75360 7.83606 7.85333 8.06106 8.81872 9.33901 9.44990 10.93196 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.004204 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.402785 B = 6658.526457 C = 7537.639301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 N -0.533 5.533 4 C 0.251 3.749 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.295 3.705 14 N -0.336 5.336 15 N -0.179 5.179 16 C -0.043 4.043 17 C 0.227 3.773 18 C -0.138 4.138 19 C -0.073 4.073 20 C -0.181 4.181 21 C 0.106 3.894 22 N -0.481 5.481 23 S 0.093 5.907 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 -3.274 18.046 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.012 4.012 3 N -0.245 5.245 4 C 0.131 3.869 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.207 1.207 13 C -0.076 4.076 14 N -0.189 5.189 15 N -0.020 5.020 16 C -0.323 4.323 17 C 0.088 3.912 18 C -0.161 4.161 19 C -0.099 4.099 20 C -0.202 4.202 21 C -0.053 4.053 22 N -0.192 5.192 23 S 0.332 5.668 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.737 -3.902 17.093 18.161 hybrid contribution 1.347 0.753 -0.128 1.549 sum -3.389 -3.149 16.965 17.585 Atomic orbital electron populations 1.22226 0.95718 1.02204 1.02851 1.21686 0.94344 0.81563 1.03579 1.46994 1.62386 1.12303 1.02815 1.19614 0.96971 0.93773 0.76548 1.21402 0.96458 1.32558 1.06601 0.92267 1.24905 0.97992 0.94647 0.96190 1.69933 1.35672 1.33037 1.14305 0.86411 0.84348 0.78189 0.78323 1.19792 1.20866 1.20710 1.26108 0.95433 0.93067 0.92965 1.71543 1.25511 1.09582 1.12239 1.71545 1.10112 1.27056 0.93313 1.26433 1.15915 0.93598 0.96351 1.18203 0.94640 0.90049 0.88336 1.22100 0.99833 0.97411 0.96774 1.21545 0.96164 0.99464 0.92678 1.22168 1.02026 0.94964 1.01009 1.22636 0.95400 0.96112 0.91119 1.67606 1.15431 1.33265 1.02899 1.84422 1.67205 1.17513 0.97709 0.91306 0.92633 0.91570 0.88404 0.91441 0.94071 0.93051 0.92562 0.83602 0.84473 0.84775 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.79 6.11 -4.04 -0.02 1.77 16 3 N -0.53 -11.11 2.56 -177.21 -0.45 -11.56 16 4 C 0.25 6.27 5.29 -5.20 -0.03 6.24 16 5 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.07 1.82 5.46 -17.81 -0.10 1.72 16 8 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 9 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 C 0.29 6.23 7.83 -87.41 -0.68 5.54 16 14 N -0.34 -7.90 10.88 29.89 0.33 -7.57 16 15 N -0.18 -3.79 11.30 32.99 0.37 -3.42 16 16 C -0.04 -0.80 7.49 -14.27 -0.11 -0.90 16 17 C 0.23 3.58 6.75 -83.04 -0.56 3.02 16 18 C -0.14 -1.83 9.73 -39.05 -0.38 -2.21 16 19 C -0.07 -0.72 10.16 -39.33 -0.40 -1.12 16 20 C -0.18 -1.60 10.11 -39.35 -0.40 -2.00 16 21 C 0.11 1.12 11.17 -17.59 -0.20 0.92 16 22 N -0.48 -6.94 10.15 -9.86 -0.10 -7.04 16 23 S 0.09 1.61 21.67 -107.50 -2.33 -0.72 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.10 1.55 8.07 -51.93 -0.42 1.13 16 28 H 0.07 0.97 7.09 -51.93 -0.37 0.60 16 29 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.05 1.44 7.64 -51.93 -0.40 1.04 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.15 1.93 7.84 -52.48 -0.41 1.51 16 33 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 35 H 0.16 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -32.10 323.88 -8.50 -40.60 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -4.10 Total: -2.93 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.82 Total: -3.80 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.88 Total: -54.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.33 Total: -0.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.10 -8.50 -40.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360997462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.601 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds