Wall clock time and date at job start Tue Mar 31 2020 08:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46955 * 2 1 4 4 C 1.46492 * 119.99699 * 269.99845 * 3 2 1 5 5 C 1.50706 * 109.47172 * 269.99805 * 4 3 2 6 6 H 1.08001 * 119.99960 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00222 * 180.02562 * 5 4 3 8 8 N 1.31525 * 119.99907 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47198 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46987 * 119.99946 * 9 7 5 12 12 H 1.48499 * 109.46637 * 239.99432 * 9 7 5 13 13 C 1.38433 * 120.00110 * 89.99947 * 3 2 1 14 14 N 1.30224 * 125.58815 * 180.02562 * 13 3 2 15 15 N 1.26253 * 117.65604 * 179.73611 * 14 13 3 16 16 C 1.30420 * 116.37690 * 359.97438 * 15 14 13 17 17 C 1.47732 * 126.14666 * 179.97438 * 16 15 14 18 18 C 1.39597 * 119.74878 * 359.97284 * 17 16 15 19 19 C 1.38308 * 119.04875 * 179.97438 * 18 17 16 20 20 C 1.38856 * 118.53413 * 359.97438 * 19 18 17 21 21 C 1.38245 * 119.41369 * 0.02562 * 20 19 18 22 22 N 1.31745 * 120.91789 * 359.73766 * 21 20 19 23 23 S 1.71287 * 125.58513 * 359.71677 * 13 3 2 24 24 H 1.08995 * 109.47263 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47444 * 300.00080 * 1 2 3 26 26 H 1.09004 * 109.46808 * 60.00080 * 1 2 3 27 27 H 1.08999 * 109.47444 * 239.99920 * 2 1 3 28 28 H 1.09001 * 109.47044 * 119.99444 * 2 1 3 29 29 H 1.08997 * 109.47838 * 30.00017 * 4 3 2 30 30 H 1.09000 * 109.47361 * 150.00396 * 4 3 2 31 31 H 0.96996 * 119.99742 * 180.02562 * 8 7 5 32 32 H 1.08005 * 120.48006 * 0.02562 * 18 17 16 33 33 H 1.08003 * 120.73713 * 180.02562 * 19 18 17 34 34 H 1.08007 * 120.29176 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.53999 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1495 2.3905 -2.8774 8 7 3.3494 3.1265 -3.6177 9 14 5.9135 2.0964 -3.4169 10 1 6.6008 1.2405 -2.4168 11 1 5.9205 1.4182 -4.7380 12 1 6.6215 3.3973 -3.5246 13 6 2.2490 2.0339 1.1989 14 7 2.6805 3.2560 1.3256 15 7 2.8339 3.7049 2.4957 16 6 2.5409 2.8909 3.4716 17 6 2.6403 3.1896 4.9150 18 6 3.0841 4.4452 5.3336 19 6 3.1710 4.7094 6.6885 20 6 2.8112 3.7106 7.5835 21 6 2.3800 2.4892 7.1004 22 7 2.3013 2.2632 5.8048 23 16 2.0065 1.3687 2.7586 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1384 31 1 3.6755 3.5169 -4.4435 32 1 3.3548 5.1998 4.6100 33 1 3.5105 5.6716 7.0425 34 1 2.8678 3.8864 8.6476 35 1 2.1000 1.7107 7.7947 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360997462.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:01 Heat of formation + Delta-G solvation = 83.896122 kcal Electronic energy + Delta-G solvation = -19710.417147 eV Core-core repulsion = 16641.997290 eV Total energy + Delta-G solvation = -3068.419857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.95144 -40.86200 -38.62571 -34.95039 -33.81539 -33.36928 -32.17331 -30.56339 -29.00969 -26.94383 -25.35580 -24.54475 -24.11050 -23.04374 -20.82740 -19.87831 -18.78091 -18.37722 -17.28282 -17.05058 -16.81811 -16.67543 -16.33013 -15.72247 -15.13775 -14.97669 -14.68290 -14.62576 -14.19953 -13.99644 -13.85989 -13.43789 -13.13124 -12.80945 -12.74206 -12.61269 -12.30462 -12.16471 -12.10982 -11.52650 -11.48377 -10.94261 -10.90061 -10.73122 -10.67035 -10.50055 -9.88106 -8.73220 -8.20039 -6.40129 -0.71405 -0.22299 0.32950 0.41223 0.49970 1.34394 1.37294 1.48172 1.79964 1.93876 2.36282 2.80193 2.91359 3.04941 3.69426 3.87730 4.01526 4.09956 4.11969 4.18357 4.19741 4.36643 4.44498 4.63912 4.72418 4.85933 4.88329 4.94239 5.12118 5.19430 5.25514 5.27780 5.57559 5.74811 5.91256 5.99107 6.11279 6.68529 6.90422 7.29064 7.81763 8.81252 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.004204 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.402785 B = 6658.526457 C = 7537.639301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 N -0.546 5.546 4 C 0.272 3.728 5 C -0.542 4.542 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.923 5.923 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.266 3.734 14 N -0.388 5.388 15 N -0.218 5.218 16 C -0.027 4.027 17 C 0.181 3.819 18 C -0.146 4.146 19 C -0.069 4.069 20 C -0.152 4.152 21 C 0.098 3.902 22 N -0.502 5.502 23 S 0.161 5.839 24 H 0.105 0.895 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.034 0.966 30 H 0.010 0.990 31 H 0.268 0.732 32 H 0.134 0.866 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 -4.394 21.650 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.260 5.260 4 C 0.150 3.850 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.192 1.192 12 H -0.208 1.208 13 C -0.105 4.105 14 N -0.240 5.240 15 N -0.057 5.057 16 C -0.310 4.310 17 C 0.043 3.957 18 C -0.170 4.170 19 C -0.094 4.094 20 C -0.173 4.173 21 C -0.061 4.061 22 N -0.214 5.214 23 S 0.401 5.599 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.152 0.848 33 H 0.190 0.810 34 H 0.198 0.802 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.425 -5.026 20.707 21.763 hybrid contribution 1.217 1.132 -0.830 1.858 sum -3.208 -3.894 19.877 20.507 Atomic orbital electron populations 1.22176 0.93631 1.04257 1.02014 1.21966 0.96036 0.79210 1.04335 1.46844 1.63935 1.13706 1.01522 1.18983 0.95710 0.91863 0.78449 1.21635 0.97551 1.32291 1.06607 0.93222 1.25739 1.02021 0.94354 0.96298 1.70037 1.37518 1.33900 1.14786 0.85421 0.79340 0.77977 0.78383 1.19601 1.19237 1.20766 1.26250 0.96323 0.93346 0.94561 1.71457 1.27061 1.11476 1.13972 1.71483 1.12873 1.28056 0.93306 1.27248 1.12273 0.93625 0.97807 1.18155 0.98579 0.91839 0.87110 1.22181 0.99924 0.96314 0.98578 1.21989 0.95035 1.01357 0.91040 1.22713 0.98133 0.93320 1.03117 1.23365 0.94636 0.98000 0.90066 1.67524 1.15985 1.33380 1.04497 1.83977 1.65915 1.15880 0.94161 0.87658 0.92856 0.92995 0.88591 0.89619 0.94788 0.97152 0.92274 0.84760 0.80976 0.80159 0.78961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 10.24 71.98 0.74 -3.51 16 2 C 0.11 3.43 6.11 86.38 0.53 3.95 16 3 N -0.55 -23.82 2.56 -714.56 -1.83 -25.65 16 4 C 0.27 14.44 5.29 85.64 0.45 14.90 16 5 C -0.54 -30.95 9.39 25.60 0.24 -30.71 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.02 0.90 5.46 84.65 0.46 1.36 16 8 N -0.92 -55.03 13.29 21.45 0.28 -54.75 16 9 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C 0.27 11.74 7.83 179.23 1.40 13.14 16 14 N -0.39 -19.42 10.88 -59.35 -0.65 -20.07 16 15 N -0.22 -9.78 11.30 -49.55 -0.56 -10.34 16 16 C -0.03 -1.04 7.49 87.41 0.65 -0.39 16 17 C 0.18 5.61 6.75 41.83 0.28 5.90 16 18 C -0.15 -3.74 9.73 22.61 0.22 -3.52 16 19 C -0.07 -1.10 10.16 22.43 0.23 -0.87 16 20 C -0.15 -1.90 10.11 22.42 0.23 -1.68 16 21 C 0.10 1.67 11.17 84.71 0.95 2.62 16 22 N -0.50 -13.45 10.15 -185.11 -1.88 -15.33 16 23 S 0.16 5.61 21.67 -56.49 -1.22 4.38 16 24 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.10 3.08 8.07 -2.39 -0.02 3.06 16 28 H 0.09 2.40 7.09 -2.39 -0.02 2.38 16 29 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 30 H 0.01 0.63 7.64 -2.39 -0.02 0.61 16 31 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.13 3.65 7.84 -2.91 -0.02 3.63 16 33 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -75.08 323.88 3.66 -71.42 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 1.10 Total: 2.04 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 6.38 Total: 1.18 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -4.63 Total: -126.13 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.22 Total: 4.38 kcal Total: -75.08 3.66 -71.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360997462.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.315 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds